CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 131598 197625 39.97 329223 2 126033 220892 36.33 346925 3 120634 193502 38.40 314136 4 128753 152707 45.74 281460 5 124756 130230 48.93 254986 6 127745 111642 53.36 239387 7 141235 113480 55.45 254715 8 67942 125917 35.05 193859 9 60640 116397 34.25 177037 10 60403 115045 34.43 175448 11 63595 118324 34.96 181919 12 61480 121072 33.68 182552 13 60178 124834 32.53 185012 14 57575 125307 31.48 182882 15 56071 126724 30.67 182795 16 52162 125589 29.35 177751 17 49778 122574 28.88 172352 18 50966 125594 28.87 176560 19 49315 125835 28.16 175150 20 49483 127325 27.99 176808 21 49449 128634 27.77 178083 22 48835 126952 27.78 175787 23 48399 126245 27.71 174644 24 48302 126561 27.62 174863 25 47136 125904 27.24 173040 26 47897 123023 28.02 170920 27 47956 127933 27.26 175889 28 48368 126456 27.67 174824 29 47521 128098 27.06 175619 30 46969 127547 26.91 174516 31 47347 125217 27.44 172564 32 46527 123323 27.39 169850 33 47004 124685 27.38 171689 34 47934 123754 27.92 171688 35 47397 123056 27.81 170453 36 46960 125491 27.23 172451 37 45406 122541 27.04 167947 38 44383 122422 26.61 166805 39 46575 124146 27.28 170721 40 46156 122403 27.38 168559 41 45589 122013 27.20 167602 42 46341 124803 27.08 171144 43 45783 121721 27.33 167504 44 45426 121434 27.22 166860 45 45782 121747 27.33 167529 46 46163 123022 27.29 169185 47 45515 120274 27.45 165789 48 45182 121781 27.06 166963 49 46514 120835 27.79 167349 50 44969 122350 26.88 167319 51 45240 121825 27.08 167065 52 46306 126144 26.85 172450 53 45180 120135 27.33 165315 54 44339 119808 27.01 164147 55 43740 117389 27.15 161129 56 44108 116906 27.39 161014 57 45206 117973 27.70 163179 58 45922 118459 27.94 164381 59 46385 116422 28.49 162807 60 45267 117322 27.84 162589 61 45763 115720 28.34 161483 62 44480 116441 27.64 160921 63 44338 115135 27.80 159473 64 43275 114646 27.40 157921 65 44159 112499 28.19 156658 66 44122 113174 28.05 157296 67 43776 110235 28.42 154011 68 42898 110314 28.00 153212 69 41933 108926 27.80 150859 70 41818 108513 27.82 150331 71 40835 106174 27.78 147009 72 40652 105586 27.80 146238 73 40217 104625 27.77 144842 74 39866 104237 27.66 144103 75 38573 103580 27.13 142153 76 38569 102889 27.27 141458 77 39279 101392 27.92 140671 78 38867 101653 27.66 140520 79 37906 99923 27.50 137829 80 37349 99505 27.29 136854 81 36716 98086 27.24 134802 82 35882 96972 27.01 132854 83 36401 97921 27.10 134322 84 36569 97796 27.22 134365 85 36210 95586 27.47 131796 86 34735 94848 26.81 129583 87 34144 93646 26.72 127790 88 34400 93573 26.88 127973 89 33784 91390 26.99 125174 90 33659 91467 26.90 125126 91 32996 89924 26.84 122920 92 32555 90243 26.51 122798 93 32708 89270 26.81 121978 94 32723 88386 27.02 121109 95 31941 86815 26.90 118756 96 31863 88344 26.51 120207 97 31266 85356 26.81 116622 98 29134 79969 26.70 109103 99 23079 63165 26.76 86244 100 30345 79903 27.52 110248 101 28639 79625 26.45 108264 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 183371 251289 42.19 434660 2 110581 242600 31.31 353181 3 47689 235447 16.84 283136 4 26650 232783 10.27 259433 5 17408 216006 7.46 233414 6 16853 210849 7.40 227702 7 11485 260730 4.22 272215 8 5589 279100 1.96 284689 9 4470 266611 1.65 271081 10 4546 259059 1.72 263605 11 4868 262140 1.82 267008 12 4608 266124 1.70 270732 13 4521 256569 1.73 261090 14 4192 257340 1.60 261532 15 4347 264126 1.62 268473 16 3760 262657 1.41 266417 17 4235 260114 1.60 264349 18 3830 260693 1.45 264523 19 3378 260478 1.28 263856 20 3576 275057 1.28 278633 21 3403 277573 1.21 280976 22 3752 273277 1.35 277029 23 3843 276334 1.37 280177 24 3648 279546 1.29 283194 25 3570 270078 1.30 273648 26 4860 273236 1.75 278096 27 3578 276073 1.28 279651 28 3390 276640 1.21 280030 29 4366 278731 1.54 283097 30 3519 281284 1.24 284803 31 3526 273949 1.27 277475 32 3401 277150 1.21 280551 33 3514 276717 1.25 280231 34 3577 273655 1.29 277232 35 4167 274878 1.49 279045 36 3493 275331 1.25 278824 37 3507 266937 1.30 270444 38 4122 271175 1.50 275297 39 3487 268556 1.28 272043 40 3602 269242 1.32 272844 41 3527 270097 1.29 273624 42 3330 271088 1.21 274418 43 3335 265820 1.24 269155 44 3343 269648 1.22 272991 45 3346 269172 1.23 272518 46 3401 266080 1.26 269481 47 3593 266850 1.33 270443 48 3244 271955 1.18 275199 49 3430 264680 1.28 268110 50 3626 264461 1.35 268087 51 3498 267730 1.29 271228 52 3404 266207 1.26 269611 53 3605 264465 1.34 268070 54 3710 268489 1.36 272199 55 3515 263808 1.31 267323 56 3777 266217 1.40 269994 57 3750 265384 1.39 269134 58 3929 263094 1.47 267023 59 4182 264503 1.56 268685 60 3822 265041 1.42 268863 61 3988 260817 1.51 264805 62 4189 260625 1.58 264814 63 4167 258335 1.59 262502 64 4131 256711 1.58 260842 65 4868 255184 1.87 260052 66 4116 251093 1.61 255209 67 4037 244148 1.63 248185 68 4549 245707 1.82 250256 69 3686 245066 1.48 248752 70 3868 238434 1.60 242302 71 3836 238207 1.58 242043 72 3735 238011 1.55 241746 73 3900 234751 1.63 238651 74 4039 232602 1.71 236641 75 3680 232948 1.56 236628 76 3574 225781 1.56 229355 77 4108 226427 1.78 230535 78 3470 222330 1.54 225800 79 3604 219614 1.61 223218 80 3575 218549 1.61 222124 81 3428 215863 1.56 219291 82 3426 212185 1.59 215611 83 3591 215362 1.64 218953 84 3492 214224 1.60 217716 85 3569 210715 1.67 214284 86 3626 212507 1.68 216133 87 3492 211559 1.62 215051 88 3409 206830 1.62 210239 89 3542 204726 1.70 208268 90 3405 204110 1.64 207515 91 3589 199336 1.77 202925 92 3641 200418 1.78 204059 93 3770 197966 1.87 201736 94 3611 194765 1.82 198376 95 3583 192242 1.83 195825 96 3713 192049 1.90 195762 97 3643 174357 2.05 178000 98 3466 161629 2.10 165095 99 1934 104064 1.82 105998 100 2563 104563 2.39 107126 101 4854 174681 2.70 179535 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 221147 336132 39.68 557279 2 129646 365453 26.19 495099 3 76444 422312 15.33 498756 4 69955 445607 13.57 515562 5 66757 528487 11.22 595244 6 55990 570514 8.94 626504 7 43664 719669 5.72 763333 8 35023 771779 4.34 806802 9 26536 715001 3.58 741537 10 26678 700325 3.67 727003 11 33922 700086 4.62 734008 12 28927 708339 3.92 737266 13 32421 723473 4.29 755894 14 35140 744272 4.51 779412 15 30195 761928 3.81 792123 16 29361 775328 3.65 804689 17 33849 778147 4.17 811996 18 28504 806665 3.41 835169 19 28537 819638 3.36 848175 20 33915 849405 3.84 883320 21 29066 848217 3.31 877283 22 31403 849377 3.57 880780 23 34053 847858 3.86 881911 24 28926 848432 3.30 877358 25 31638 852226 3.58 883864 26 34128 857729 3.83 891857 27 29576 860253 3.32 889829 28 28991 865580 3.24 894571 29 33965 860703 3.80 894668 30 28927 853651 3.28 882578 31 29555 842792 3.39 872347 32 32084 845509 3.66 877593 33 28937 845700 3.31 874637 34 33395 850934 3.78 884329 35 33825 844424 3.85 878249 36 29474 851156 3.35 880630 37 28741 844844 3.29 873585 38 34405 848723 3.90 883128 39 29082 843160 3.33 872242 40 29458 840565 3.39 870023 41 34067 844404 3.88 878471 42 30756 849767 3.49 880523 43 31794 838384 3.65 870178 44 32856 844222 3.75 877078 45 30673 836697 3.54 867370 46 29527 838364 3.40 867891 47 32168 833245 3.72 865413 48 27596 835355 3.20 862951 49 28416 824795 3.33 853211 50 31763 824993 3.71 856756 51 27571 815062 3.27 842633 52 29706 813774 3.52 843480 53 32233 806755 3.84 838988 54 27869 806900 3.34 834769 55 28716 802950 3.45 831666 56 32142 800459 3.86 832601 57 27264 809570 3.26 836834 58 28047 801244 3.38 829291 59 32428 801966 3.89 834394 60 26985 791192 3.30 818177 61 29679 782159 3.66 811838 62 31201 774454 3.87 805655 63 27129 765338 3.42 792467 64 29256 759725 3.71 788981 65 29931 755272 3.81 785203 66 26511 746966 3.43 773477 67 26309 741297 3.43 767606 68 28915 737445 3.77 766360 69 26102 732383 3.44 758485 70 26075 726284 3.47 752359 71 29208 722038 3.89 751246 72 25781 719758 3.46 745539 73 28442 709190 3.86 737632 74 28889 705192 3.94 734081 75 25476 697834 3.52 723310 76 25529 692802 3.55 718331 77 28957 686523 4.05 715480 78 24162 679949 3.43 704111 79 25010 676978 3.56 701988 80 28338 671485 4.05 699823 81 25547 662067 3.72 687614 82 26304 653924 3.87 680228 83 28293 654237 4.15 682530 84 24947 646647 3.71 671594 85 24372 637639 3.68 662011 86 26112 630067 3.98 656179 87 23200 625571 3.58 648771 88 23311 621956 3.61 645267 89 26754 612849 4.18 639603 90 23059 611159 3.64 634218 91 23647 601417 3.78 625064 92 25424 602227 4.05 627651 93 22858 595378 3.70 618236 94 22738 588375 3.72 611113 95 25549 581239 4.21 606788 96 21677 570030 3.66 591707 97 21771 556432 3.77 578203 98 23309 517859 4.31 541168 99 13240 359799 3.55 373039 100 14738 318574 4.42 333312 101 22471 524163 4.11 546634 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 118964 125173 48.73 244137 2 100589 103907 49.19 204496 3 106072 116841 47.58 222913 4 95017 127705 42.66 222722 5 41981 161539 20.63 203520 6 26565 90048 22.78 116613 7 22383 97885 18.61 120268 8 23733 90494 20.78 114227 9 20164 76838 20.79 97002 10 22186 86082 20.49 108268 11 23777 85066 21.85 108843 12 23070 82198 21.92 105268 13 23919 78021 23.46 101940 14 24322 81333 23.02 105655 15 24120 73581 24.69 97701 16 22135 70880 23.80 93015 17 27855 77454 26.45 105309 18 26168 73694 26.20 99862 19 25373 72588 25.90 97961 20 23339 71163 24.70 94502 21 24059 68614 25.96 92673 22 24563 72138 25.40 96701 23 22777 68365 24.99 91142 24 21633 65962 24.70 87595 25 24165 67567 26.34 91732 26 22053 64861 25.37 86914 27 24501 66182 27.02 90683 28 21776 61947 26.01 83723 29 23166 65403 26.16 88569 30 21757 61028 26.28 82785 31 20772 62618 24.91 83390 32 20615 58984 25.90 79599 33 22854 58700 28.02 81554 34 22422 61744 26.64 84166 35 27456 67352 28.96 94808 36 22152 58673 27.41 80825 37 23069 61821 27.18 84890 38 20856 58169 26.39 79025 39 21187 56423 27.30 77610 40 23502 56508 29.37 80010 41 20036 55255 26.61 75291 42 20625 57765 26.31 78390 43 20185 55602 26.63 75787 44 18914 53749 26.03 72663 45 23679 59401 28.50 83080 46 18829 50352 27.22 69181 47 18908 51438 26.88 70346 48 19172 50849 27.38 70021 49 17967 52503 25.50 70470 50 17333 48487 26.33 65820 51 17377 47531 26.77 64908 52 17569 48522 26.58 66091 53 17624 47210 27.18 64834 54 17117 46956 26.71 64073 55 17470 44987 27.97 62457 56 16153 44963 26.43 61116 57 16640 44419 27.25 61059 58 16109 44934 26.39 61043 59 15013 41304 26.66 56317 60 15568 42297 26.90 57865 61 14311 41202 25.78 55513 62 14304 38999 26.84 53303 63 15325 39582 27.91 54907 64 14303 39426 26.62 53729 65 14215 37455 27.51 51670 66 14909 38840 27.74 53749 67 13567 39899 25.38 53466 68 15357 41178 27.16 56535 69 13831 38183 26.59 52014 70 13235 37242 26.22 50477 71 13849 34687 28.53 48536 72 12650 34121 27.05 46771 73 12923 35010 26.96 47933 74 11828 33686 25.99 45514 75 12139 34694 25.92 46833 76 12449 33156 27.30 45605 77 11965 33401 26.37 45366 78 11933 33248 26.41 45181 79 11498 31720 26.60 43218 80 11157 31051 26.43 42208 81 11298 31722 26.26 43020 82 11293 31592 26.33 42885 83 11547 30007 27.79 41554 84 12850 32877 28.10 45727 85 10708 30717 25.85 41425 86 10505 29506 26.26 40011 87 10658 29620 26.46 40278 88 10755 29309 26.84 40064 89 11213 29544 27.51 40757 90 11084 29362 27.40 40446 91 10237 28340 26.54 38577 92 9880 28069 26.03 37949 93 10125 27887 26.64 38012 94 10502 28027 27.26 38529 95 10198 27125 27.32 37323 96 9646 27329 26.09 36975 97 11066 28757 27.79 39823 98 9663 25848 27.21 35511 99 8758 0 100.00 8758 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 32707 153748 17.54 186455 2 31058 152087 16.96 183145 3 29504 156980 15.82 186484 4 31899 171239 15.70 203138 5 4295 304975 1.39 309270 6 3116 377133 0.82 380249 7 2128 213020 0.99 215148 8 2015 231110 0.86 233125 9 1876 188372 0.99 190248 10 1910 180797 1.05 182707 11 2822 253347 1.10 256169 12 2098 193241 1.07 195339 13 2044 192762 1.05 194806 14 2080 183984 1.12 186064 15 1962 179026 1.08 180988 16 1798 166769 1.07 168567 17 2148 179821 1.18 181969 18 2510 156182 1.58 158692 19 2102 158808 1.31 160910 20 2151 156167 1.36 158318 21 2674 146427 1.79 149101 22 2397 165442 1.43 167839 23 2168 162500 1.32 164668 24 1918 143885 1.32 145803 25 2084 147672 1.39 149756 26 2319 154456 1.48 156775 27 2154 143847 1.48 146001 28 2082 139085 1.47 141167 29 2176 149599 1.43 151775 30 2345 141793 1.63 144138 31 2087 135692 1.51 137779 32 2025 138433 1.44 140458 33 2370 167675 1.39 170045 34 2119 134386 1.55 136505 35 2297 140052 1.61 142349 36 2117 138918 1.50 141035 37 2128 127873 1.64 130001 38 2251 139264 1.59 141515 39 2221 127928 1.71 130149 40 2171 124472 1.71 126643 41 2220 120670 1.81 122890 42 2276 113290 1.97 115566 43 2462 118915 2.03 121377 44 2016 116167 1.71 118183 45 1941 106401 1.79 108342 46 1938 107011 1.78 108949 47 2156 110246 1.92 112402 48 2059 104268 1.94 106327 49 2015 111025 1.78 113040 50 2113 105779 1.96 107892 51 1906 99667 1.88 101573 52 2012 98910 1.99 100922 53 2412 110140 2.14 112552 54 1952 99062 1.93 101014 55 1886 99853 1.85 101739 56 1686 98039 1.69 99725 57 2039 94519 2.11 96558 58 1588 94052 1.66 95640 59 1463 94433 1.53 95896 60 1359 89753 1.49 91112 61 1225 90410 1.34 91635 62 1121 95021 1.17 96142 63 1132 94378 1.19 95510 64 980 84469 1.15 85449 65 1095 91087 1.19 92182 66 994 82197 1.19 83191 67 1030 90804 1.12 91834 68 950 87733 1.07 88683 69 1025 84125 1.20 85150 70 966 84729 1.13 85695 71 1002 87420 1.13 88422 72 952 79680 1.18 80632 73 904 79132 1.13 80036 74 924 81445 1.12 82369 75 861 77828 1.09 78689 76 891 75733 1.16 76624 77 897 80688 1.10 81585 78 925 76484 1.19 77409 79 879 75881 1.15 76760 80 857 73331 1.16 74188 81 903 70597 1.26 71500 82 893 70293 1.25 71186 83 809 71350 1.12 72159 84 753 68068 1.09 68821 85 858 77240 1.10 78098 86 845 69312 1.20 70157 87 867 68132 1.26 68999 88 821 65059 1.25 65880 89 928 69762 1.31 70690 90 915 68313 1.32 69228 91 879 70860 1.23 71739 92 855 66788 1.26 67643 93 770 63627 1.20 64397 94 777 62755 1.22 63532 95 842 64204 1.29 65046 96 940 60967 1.52 61907 97 782 61268 1.26 62050 98 662 60521 1.08 61183 99 636 0 100.00 636 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 56068 200437 21.86 256505 2 49095 162784 23.17 211879 3 49674 166962 22.93 216636 4 51008 163312 23.80 214320 5 17351 335987 4.91 353338 6 17398 459497 3.65 476895 7 18687 618423 2.93 637110 8 16721 608802 2.67 625523 9 18576 570259 3.15 588835 10 17735 586018 2.94 603753 11 17260 578607 2.90 595867 12 16100 542016 2.88 558116 13 16247 562707 2.81 578954 14 16629 566159 2.85 582788 15 15923 585777 2.65 601700 16 15263 562978 2.64 578241 17 16150 565179 2.78 581329 18 15196 559598 2.64 574794 19 14367 512516 2.73 526883 20 16626 549034 2.94 565660 21 15533 509978 2.96 525511 22 16657 495504 3.25 512161 23 15690 485335 3.13 501025 24 14428 464533 3.01 478961 25 16437 462543 3.43 478980 26 15072 459857 3.17 474929 27 15619 491579 3.08 507198 28 15143 469312 3.13 484455 29 15063 462758 3.15 477821 30 15802 442136 3.45 457938 31 15288 429285 3.44 444573 32 14408 415329 3.35 429737 33 15374 412807 3.59 428181 34 14865 414302 3.46 429167 35 15416 425507 3.50 440923 36 14024 421569 3.22 435593 37 14293 413854 3.34 428147 38 15020 433626 3.35 448646 39 14806 396215 3.60 411021 40 14523 414000 3.39 428523 41 14488 389587 3.59 404075 42 14202 398952 3.44 413154 43 14500 373294 3.74 387794 44 13365 372818 3.46 386183 45 13760 371054 3.58 384814 46 13416 374229 3.46 387645 47 12652 364443 3.36 377095 48 12998 355650 3.53 368648 49 12745 362167 3.40 374912 50 12438 352439 3.41 364877 51 12611 341708 3.56 354319 52 11987 323500 3.57 335487 53 11763 326221 3.48 337984 54 11054 318619 3.35 329673 55 11244 329663 3.30 340907 56 11142 317299 3.39 328441 57 10586 325571 3.15 336157 58 10157 314194 3.13 324351 59 10477 301088 3.36 311565 60 9801 309885 3.07 319686 61 10485 293545 3.45 304030 62 9610 290845 3.20 300455 63 9196 294818 3.02 304014 64 9792 283823 3.33 293615 65 9050 289049 3.04 298099 66 9007 278438 3.13 287445 67 9067 279128 3.15 288195 68 8819 289732 2.95 298551 69 9147 281681 3.15 290828 70 8759 271003 3.13 279762 71 8512 266010 3.10 274522 72 8973 265064 3.27 274037 73 8735 262470 3.22 271205 74 8105 261865 3.00 269970 75 8200 261214 3.04 269414 76 8038 250947 3.10 258985 77 8664 250602 3.34 259266 78 8315 253158 3.18 261473 79 8056 258260 3.02 266316 80 8254 247995 3.22 256249 81 8246 249253 3.20 257499 82 8184 243849 3.25 252033 83 7646 244635 3.03 252281 84 7879 241605 3.16 249484 85 7697 237857 3.13 245554 86 7267 236471 2.98 243738 87 7338 235336 3.02 242674 88 7305 225977 3.13 233282 89 7122 225133 3.07 232255 90 7305 227042 3.12 234347 91 7052 224768 3.04 231820 92 6802 222129 2.97 228931 93 6706 219058 2.97 225764 94 6590 216956 2.95 223546 95 6825 211514 3.13 218339 96 6356 208807 2.95 215163 97 6218 210670 2.87 216888 98 5743 201800 2.77 207543 99 4189 0 100.00 4189