Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-215_S31_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-215_S31_L004_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 21150005
Paired-end alignments with a unique best hit 11658604
Pairs without alignments under any condition 5775467
Pairs that did not map uniquely 3715934
Genomic sequence context not extractable (edges of chromosomes) 58517

Cytosine Methylation

Total C's analysed 354072230
Methylated C's in CpG context 13001003
Methylated C's in CHG context 1957705
Methylated C's in CHH context 7686039
Methylated C's in Unknown context 247085
Unmethylated C's in CpG context 39434224
Unmethylated C's in CHG context 76276889
Unmethylated C's in CHH context 215716370
Unmethylated C's in Unknown context 1729280
Percentage methylation (CpG context) 24.8%
Percentage methylation (CHG context) 2.5%
Percentage methylation (CHH context) 3.4%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 5739171 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 5860916 original bottom strand