CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 168163 287127 36.94 455290 2 161430 323234 33.31 484664 3 150196 291023 34.04 441219 4 156902 239562 39.58 396464 5 153952 210513 42.24 364465 6 159557 175788 47.58 335345 7 178608 170517 51.16 349125 8 82353 200401 29.13 282754 9 73073 184481 28.37 257554 10 73093 178971 29.00 252064 11 76219 182528 29.46 258747 12 74545 184267 28.80 258812 13 73398 186011 28.29 259409 14 71121 189684 27.27 260805 15 69538 190089 26.78 259627 16 64589 189609 25.41 254198 17 61317 184774 24.92 246091 18 63752 189869 25.14 253621 19 62161 189484 24.70 251645 20 62561 192715 24.51 255276 21 63101 194609 24.49 257710 22 61856 191176 24.45 253032 23 61364 189842 24.43 251206 24 60822 190822 24.17 251644 25 59404 189784 23.84 249188 26 59975 186981 24.29 246956 27 60109 193574 23.69 253683 28 61506 192823 24.18 254329 29 60045 191971 23.83 252016 30 59215 192170 23.56 251385 31 60214 189219 24.14 249433 32 59015 186305 24.06 245320 33 59717 189763 23.94 249480 34 60275 187294 24.35 247569 35 59452 189214 23.91 248666 36 58533 191152 23.44 249685 37 57278 185980 23.55 243258 38 56742 186116 23.36 242858 39 58718 189258 23.68 247976 40 57831 185587 23.76 243418 41 57523 185694 23.65 243217 42 58692 190139 23.59 248831 43 58211 188799 23.57 247010 44 57549 186401 23.59 243950 45 58403 187443 23.76 245846 46 58077 188952 23.51 247029 47 57602 185663 23.68 243265 48 57415 186352 23.55 243767 49 59359 185858 24.21 245217 50 57392 187768 23.41 245160 51 58773 187604 23.85 246377 52 58336 190458 23.45 248794 53 56372 183116 23.54 239488 54 56018 183084 23.43 239102 55 55656 181236 23.49 236892 56 56239 179629 23.84 235868 57 57401 181844 23.99 239245 58 57861 182512 24.07 240373 59 58206 180714 24.36 238920 60 57517 182069 24.01 239586 61 58125 178939 24.52 237064 62 56094 179925 23.77 236019 63 55593 178910 23.71 234503 64 55378 177282 23.80 232660 65 55400 175268 24.02 230668 66 56174 177206 24.07 233380 67 54973 171483 24.28 226456 68 54255 172910 23.88 227165 69 53373 171046 23.78 224419 70 53075 171323 23.65 224398 71 51661 167113 23.61 218774 72 52084 166390 23.84 218474 73 50995 164195 23.70 215190 74 50738 162812 23.76 213550 75 49348 162592 23.28 211940 76 49736 161852 23.51 211588 77 49606 159165 23.76 208771 78 49846 161814 23.55 211660 79 49405 158373 23.78 207778 80 48171 157245 23.45 205416 81 47473 155349 23.41 202822 82 46170 154001 23.07 200171 83 47199 155196 23.32 202395 84 46707 154902 23.17 201609 85 46480 151103 23.52 197583 86 45044 149957 23.10 195001 87 44076 148545 22.88 192621 88 44722 148062 23.20 192784 89 43738 144838 23.19 188576 90 43167 145999 22.82 189166 91 42914 143077 23.07 185991 92 42183 142390 22.85 184573 93 41927 141460 22.86 183387 94 41603 139578 22.96 181181 95 40998 137808 22.93 178806 96 40998 138677 22.82 179675 97 39501 133466 22.84 172967 98 37145 126216 22.74 163361 99 29869 99485 23.09 129354 100 38673 126312 23.44 164985 101 37291 126953 22.70 164244 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 239503 364881 39.63 604384 2 137082 358526 27.66 495608 3 54093 343555 13.60 397648 4 30661 338926 8.30 369587 5 21113 311107 6.36 332220 6 18485 290247 5.99 308732 7 14418 374034 3.71 388452 8 6760 409586 1.62 416346 9 5589 388897 1.42 394486 10 5659 371185 1.50 376844 11 5876 372741 1.55 378617 12 5839 371162 1.55 377001 13 5389 358600 1.48 363989 14 5245 360426 1.43 365671 15 5203 370543 1.38 375746 16 4654 369914 1.24 374568 17 5341 365260 1.44 370601 18 4725 364373 1.28 369098 19 4080 367004 1.10 371084 20 4584 385268 1.18 389852 21 4332 388273 1.10 392605 22 4511 382634 1.17 387145 23 4603 388377 1.17 392980 24 4381 393460 1.10 397841 25 4315 379625 1.12 383940 26 5467 383258 1.41 388725 27 4326 388934 1.10 393260 28 4358 388530 1.11 392888 29 5176 393733 1.30 398909 30 4148 393084 1.04 397232 31 4096 386528 1.05 390624 32 4210 390944 1.07 395154 33 4270 389485 1.08 393755 34 4388 385767 1.12 390155 35 5012 387737 1.28 392749 36 4453 389589 1.13 394042 37 4406 377417 1.15 381823 38 4898 385080 1.26 389978 39 4333 381942 1.12 386275 40 4358 382991 1.13 387349 41 4339 384685 1.12 389024 42 4178 385324 1.07 389502 43 4160 378957 1.09 383117 44 4221 383916 1.09 388137 45 4164 382105 1.08 386269 46 4231 377981 1.11 382212 47 4463 382814 1.15 387277 48 4205 389311 1.07 393516 49 4339 379889 1.13 384228 50 4593 380753 1.19 385346 51 4421 383830 1.14 388251 52 4396 380918 1.14 385314 53 4494 378192 1.17 382686 54 4641 384500 1.19 389141 55 4527 379381 1.18 383908 56 4723 382128 1.22 386851 57 4567 382177 1.18 386744 58 4941 377972 1.29 382913 59 5099 380277 1.32 385376 60 5062 381965 1.31 387027 61 5089 375194 1.34 380283 62 5382 374709 1.42 380091 63 5230 372059 1.39 377289 64 5404 367980 1.45 373384 65 6118 368085 1.63 374203 66 5379 361975 1.46 367354 67 5391 354181 1.50 359572 68 5670 356844 1.56 362514 69 5039 356270 1.39 361309 70 4877 347971 1.38 352848 71 4959 348716 1.40 353675 72 4944 346612 1.41 351556 73 4936 342039 1.42 346975 74 5300 341712 1.53 347012 75 4756 341908 1.37 346664 76 4702 330752 1.40 335454 77 5429 333373 1.60 338802 78 4832 327460 1.45 332292 79 4908 319916 1.51 324824 80 4737 320642 1.46 325379 81 4837 317700 1.50 322537 82 4678 311268 1.48 315946 83 4991 317143 1.55 322134 84 4926 314890 1.54 319816 85 4891 309007 1.56 313898 86 4882 308478 1.56 313360 87 4832 311373 1.53 316205 88 4742 303659 1.54 308401 89 4857 301345 1.59 306202 90 4776 300604 1.56 305380 91 4812 295767 1.60 300579 92 4879 296484 1.62 301363 93 5118 293025 1.72 298143 94 4885 287749 1.67 292634 95 5078 285350 1.75 290428 96 5074 284090 1.75 289164 97 4963 258776 1.88 263739 98 4566 239796 1.87 244362 99 2654 155395 1.68 158049 100 3402 156908 2.12 160310 101 6866 260621 2.57 267487 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 275518 443992 38.29 719510 2 151617 485713 23.79 637330 3 87719 561096 13.52 648815 4 81755 597811 12.03 679566 5 78821 724119 9.82 802940 6 66435 801442 7.65 867877 7 53641 1031627 4.94 1085268 8 41122 1134116 3.50 1175238 9 30985 1032143 2.91 1063128 10 30916 996154 3.01 1027070 11 39129 994506 3.79 1033635 12 33190 1005133 3.20 1038323 13 36774 1024431 3.47 1061205 14 40695 1047297 3.74 1087992 15 34730 1075361 3.13 1110091 16 33705 1086863 3.01 1120568 17 39820 1097041 3.50 1136861 18 32941 1137818 2.81 1170759 19 33138 1165223 2.77 1198361 20 39162 1200278 3.16 1239440 21 33832 1201554 2.74 1235386 22 36470 1201428 2.95 1237898 23 39967 1201364 3.22 1241331 24 34036 1201602 2.75 1235638 25 36432 1206491 2.93 1242923 26 39928 1220706 3.17 1260634 27 33944 1226747 2.69 1260691 28 34549 1232056 2.73 1266605 29 39487 1228767 3.11 1268254 30 34181 1220035 2.73 1254216 31 34542 1204814 2.79 1239356 32 37973 1207357 3.05 1245330 33 33891 1210215 2.72 1244106 34 37497 1216293 2.99 1253790 35 39369 1206848 3.16 1246217 36 34025 1218077 2.72 1252102 37 33366 1211337 2.68 1244703 38 39871 1216879 3.17 1256750 39 33816 1209284 2.72 1243100 40 34153 1204029 2.76 1238182 41 39683 1211195 3.17 1250878 42 35140 1213839 2.81 1248979 43 37270 1203055 3.00 1240325 44 38580 1212248 3.08 1250828 45 35594 1201841 2.88 1237435 46 34498 1206539 2.78 1241037 47 37717 1207082 3.03 1244799 48 32678 1205208 2.64 1237886 49 33491 1191631 2.73 1225122 50 37492 1189591 3.06 1227083 51 32654 1181065 2.69 1213719 52 34859 1177851 2.87 1212710 53 38049 1170969 3.15 1209018 54 33110 1173467 2.74 1206577 55 34036 1166504 2.84 1200540 56 37875 1163262 3.15 1201137 57 32496 1174446 2.69 1206942 58 33497 1168483 2.79 1201980 59 38627 1169702 3.20 1208329 60 32429 1156894 2.73 1189323 61 35087 1146815 2.97 1181902 62 37339 1133917 3.19 1171256 63 32445 1126910 2.80 1159355 64 34489 1118794 2.99 1153283 65 36361 1112137 3.17 1148498 66 31762 1105609 2.79 1137371 67 32340 1096552 2.86 1128892 68 35568 1089258 3.16 1124826 69 31524 1085046 2.82 1116570 70 31592 1077048 2.85 1108640 71 35392 1070230 3.20 1105622 72 31381 1068795 2.85 1100176 73 34067 1049932 3.14 1083999 74 35199 1050514 3.24 1085713 75 30820 1038731 2.88 1069551 76 31412 1031910 2.95 1063322 77 35584 1023351 3.36 1058935 78 29527 1016216 2.82 1045743 79 30568 1008599 2.94 1039167 80 34133 1002003 3.29 1036136 81 30785 987490 3.02 1018275 82 32191 979064 3.18 1011255 83 34103 978426 3.37 1012529 84 30483 964578 3.06 995061 85 29649 952536 3.02 982185 86 32339 942587 3.32 974926 87 28009 936369 2.90 964378 88 28241 930215 2.95 958456 89 32036 918726 3.37 950762 90 28049 914804 2.97 942853 91 28770 906463 3.08 935233 92 31541 899284 3.39 930825 93 27894 893216 3.03 921110 94 27879 881810 3.06 909689 95 31246 870562 3.46 901808 96 26851 856938 3.04 883789 97 26747 835659 3.10 862406 98 28393 778524 3.52 806917 99 16408 541029 2.94 557437 100 17811 479499 3.58 497310 101 28505 790693 3.48 819198 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 134242 171100 43.96 305342 2 118745 154834 43.40 273579 3 128050 173333 42.49 301383 4 119766 198384 37.64 318150 5 51230 256923 16.62 308153 6 31088 139701 18.20 170789 7 27461 146770 15.76 174231 8 28529 138861 17.04 167390 9 25560 119862 17.58 145422 10 28287 133017 17.54 161304 11 29845 130434 18.62 160279 12 28481 124232 18.65 152713 13 29777 121137 19.73 150914 14 30786 124743 19.79 155529 15 30142 114044 20.90 144186 16 28788 110652 20.65 139440 17 34050 118653 22.30 152703 18 33041 114720 22.36 147761 19 31581 112194 21.97 143775 20 29663 109544 21.31 139207 21 30960 106691 22.49 137651 22 30164 109346 21.62 139510 23 28949 105244 21.57 134193 24 27637 101218 21.45 128855 25 30112 104643 22.35 134755 26 27613 99772 21.68 127385 27 30163 101363 22.93 131526 28 27827 96560 22.37 124387 29 28708 100782 22.17 129490 30 27624 94083 22.70 121707 31 26255 96845 21.33 123100 32 25552 90503 22.02 116055 33 28475 91687 23.70 120162 34 27674 95765 22.42 123439 35 32248 100752 24.25 133000 36 27357 90272 23.26 117629 37 28154 92851 23.27 121005 38 25706 89421 22.33 115127 39 26449 87492 23.21 113941 40 28524 87508 24.58 116032 41 25109 86126 22.57 111235 42 25840 87266 22.85 113106 43 25377 85128 22.96 110505 44 23876 82494 22.45 106370 45 28250 89052 24.08 117302 46 23470 79356 22.82 102826 47 23965 80611 22.92 104576 48 23813 79285 23.10 103098 49 22911 82145 21.81 105056 50 21821 74623 22.63 96444 51 21775 73051 22.96 94826 52 22410 74487 23.13 96897 53 22467 72739 23.60 95206 54 21775 73263 22.91 95038 55 21650 70254 23.56 91904 56 20352 70202 22.47 90554 57 20901 69327 23.16 90228 58 20125 69769 22.39 89894 59 19477 65236 22.99 84713 60 19996 65013 23.52 85009 61 17629 63563 21.71 81192 62 18064 61946 22.58 80010 63 18838 61449 23.46 80287 64 17840 61438 22.50 79278 65 17794 58038 23.47 75832 66 18671 60835 23.48 79506 67 17550 60892 22.37 78442 68 18270 62000 22.76 80270 69 17242 57884 22.95 75126 70 16743 57236 22.63 73979 71 16998 53839 24.00 70837 72 16301 52594 23.66 68895 73 16013 54049 22.86 70062 74 14858 52620 22.02 67478 75 15016 51897 22.44 66913 76 15398 50620 23.32 66018 77 15056 50726 22.89 65782 78 15005 50756 22.82 65761 79 14171 49268 22.34 63439 80 14098 48270 22.60 62368 81 14051 48053 22.62 62104 82 14329 48063 22.97 62392 83 14354 45790 23.87 60144 84 15155 49128 23.58 64283 85 13782 46577 22.83 60359 86 13306 46053 22.42 59359 87 13264 45020 22.76 58284 88 13309 44814 22.90 58123 89 13804 44656 23.61 58460 90 13831 44014 23.91 57845 91 12943 42630 23.29 55573 92 12269 42558 22.38 54827 93 12832 42954 23.00 55786 94 12955 42428 23.39 55383 95 12669 41519 23.38 54188 96 12421 41531 23.02 53952 97 13230 42683 23.66 55913 98 12001 39397 23.35 51398 99 10620 0 100.00 10620 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 44948 218377 17.07 263325 2 47293 228013 17.18 275306 3 43873 233029 15.84 276902 4 48128 246106 16.36 294234 5 5572 452349 1.22 457921 6 4110 549447 0.74 553557 7 2583 305275 0.84 307858 8 2552 324535 0.78 327087 9 2501 273448 0.91 275949 10 2492 261902 0.94 264394 11 3386 339860 0.99 343246 12 2638 274831 0.95 277469 13 2475 273117 0.90 275592 14 2614 265821 0.97 268435 15 2596 254745 1.01 257341 16 2314 237303 0.97 239617 17 2566 254349 1.00 256915 18 2915 225623 1.28 228538 19 2369 224495 1.04 226864 20 2561 223295 1.13 225856 21 3072 213306 1.42 216378 22 2601 231183 1.11 233784 23 2513 228022 1.09 230535 24 2413 207201 1.15 209614 25 2417 211273 1.13 213690 26 2626 221221 1.17 223847 27 2420 207082 1.16 209502 28 2467 197198 1.24 199665 29 2484 210761 1.16 213245 30 2487 200558 1.22 203045 31 2256 195311 1.14 197567 32 2344 199369 1.16 201713 33 2599 225724 1.14 228323 34 2353 193680 1.20 196033 35 2499 197189 1.25 199688 36 2300 194021 1.17 196321 37 2253 181991 1.22 184244 38 2507 192310 1.29 194817 39 2504 183124 1.35 185628 40 2326 177688 1.29 180014 41 2475 173367 1.41 175842 42 2469 162924 1.49 165393 43 2673 168949 1.56 171622 44 2215 168214 1.30 170429 45 2212 155308 1.40 157520 46 2263 155516 1.43 157779 47 2444 160012 1.50 162456 48 2307 152855 1.49 155162 49 2284 157511 1.43 159795 50 2430 153567 1.56 155997 51 2351 143182 1.62 145533 52 2264 141399 1.58 143663 53 2564 155346 1.62 157910 54 2241 142311 1.55 144552 55 2199 142983 1.51 145182 56 2118 141986 1.47 144104 57 2423 135261 1.76 137684 58 2035 136656 1.47 138691 59 1757 136155 1.27 137912 60 1691 130311 1.28 132002 61 1460 129406 1.12 130866 62 1485 134249 1.09 135734 63 1487 135891 1.08 137378 64 1336 123319 1.07 124655 65 1420 129159 1.09 130579 66 1287 118437 1.07 119724 67 1404 127819 1.09 129223 68 1310 125968 1.03 127278 69 1386 121411 1.13 122797 70 1210 120206 1.00 121416 71 1245 123247 1.00 124492 72 1191 112989 1.04 114180 73 1158 113683 1.01 114841 74 1169 115457 1.00 116626 75 1061 110331 0.95 111392 76 1132 107350 1.04 108482 77 1201 113983 1.04 115184 78 1191 109039 1.08 110230 79 1152 106591 1.07 107743 80 1095 104913 1.03 106008 81 1134 100495 1.12 101629 82 1105 99328 1.10 100433 83 1074 101448 1.05 102522 84 1055 96748 1.08 97803 85 1115 105827 1.04 106942 86 1069 97547 1.08 98616 87 1100 97200 1.12 98300 88 1058 92326 1.13 93384 89 1114 98880 1.11 99994 90 1112 95933 1.15 97045 91 1096 97394 1.11 98490 92 991 94132 1.04 95123 93 994 90094 1.09 91088 94 1073 88798 1.19 89871 95 1090 90497 1.19 91587 96 1223 86697 1.39 87920 97 1035 86304 1.19 87339 98 861 83787 1.02 84648 99 736 0 100.00 736 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 79844 312414 20.35 392258 2 67685 259519 20.69 327204 3 68612 257775 21.02 326387 4 67821 246735 21.56 314556 5 20469 485675 4.04 506144 6 20300 671137 2.94 691437 7 21500 901666 2.33 923166 8 19790 893005 2.17 912795 9 22735 835760 2.65 858495 10 20455 856389 2.33 876844 11 20466 842163 2.37 862629 12 19208 786166 2.38 805374 13 18405 811982 2.22 830387 14 19514 816765 2.33 836279 15 19047 831491 2.24 850538 16 17046 792313 2.11 809359 17 18973 793103 2.34 812076 18 18389 791593 2.27 809982 19 16231 740451 2.15 756682 20 18904 775491 2.38 794395 21 18050 727624 2.42 745674 22 18167 711681 2.49 729848 23 18308 699111 2.55 717419 24 16664 668428 2.43 685092 25 18301 667771 2.67 686072 26 17194 661292 2.53 678486 27 18044 697792 2.52 715836 28 16835 674681 2.43 691516 29 17479 662956 2.57 680435 30 18045 643313 2.73 661358 31 16994 628778 2.63 645772 32 16807 611069 2.68 627876 33 17691 599362 2.87 617053 34 16421 598228 2.67 614649 35 17292 612494 2.75 629786 36 16333 609640 2.61 625973 37 15847 596089 2.59 611936 38 17137 615825 2.71 632962 39 16972 575578 2.86 592550 40 16226 594359 2.66 610585 41 16810 565822 2.89 582632 42 16501 571754 2.81 588255 43 16566 546192 2.94 562758 44 15077 545933 2.69 561010 45 16019 541061 2.88 557080 46 14935 544751 2.67 559686 47 14728 536391 2.67 551119 48 15212 520723 2.84 535935 49 14603 522566 2.72 537169 50 14814 516455 2.79 531269 51 14522 503635 2.80 518157 52 13435 478424 2.73 491859 53 13805 480056 2.80 493861 54 13163 467780 2.74 480943 55 12866 477984 2.62 490850 56 12973 468941 2.69 481914 57 12677 474406 2.60 487083 58 11985 460943 2.53 472928 59 12414 444574 2.72 456988 60 11686 453306 2.51 464992 61 12193 432972 2.74 445165 62 11609 429931 2.63 441540 63 11199 430079 2.54 441278 64 11316 417537 2.64 428853 65 10952 420712 2.54 431664 66 10776 410051 2.56 420827 67 10590 408356 2.53 418946 68 10726 417687 2.50 428413 69 11002 406809 2.63 417811 70 10186 396822 2.50 407008 71 10553 390417 2.63 400970 72 10823 386916 2.72 397739 73 10089 381569 2.58 391658 74 9798 381370 2.50 391168 75 10110 380957 2.59 391067 76 9466 368934 2.50 378400 77 10424 365258 2.77 375682 78 10040 366609 2.67 376649 79 9690 371794 2.54 381484 80 9945 360119 2.69 370064 81 10033 358818 2.72 368851 82 9495 353097 2.62 362592 83 9324 351057 2.59 360381 84 9731 350710 2.70 360441 85 8941 340937 2.56 349878 86 9081 340468 2.60 349549 87 8998 335476 2.61 344474 88 8705 327816 2.59 336521 89 8938 325928 2.67 334866 90 8709 326103 2.60 334812 91 8432 320866 2.56 329298 92 8212 317993 2.52 326205 93 8145 313194 2.53 321339 94 7683 307550 2.44 315233 95 8224 303236 2.64 311460 96 7670 301921 2.48 309591 97 7178 300586 2.33 307764 98 7066 288527 2.39 295593 99 5082 0 100.00 5082