Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-214_S30_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-214_S30_L004_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 28660043
Paired-end alignments with a unique best hit 15807899
Pairs without alignments under any condition 8230323
Pairs that did not map uniquely 4621821
Genomic sequence context not extractable (edges of chromosomes) 76961

Cytosine Methylation

Total C's analysed 493747901
Methylated C's in CpG context 15458866
Methylated C's in CHG context 2410662
Methylated C's in CHH context 9025861
Methylated C's in Unknown context 274756
Unmethylated C's in CpG context 56627874
Unmethylated C's in CHG context 106325056
Unmethylated C's in CHH context 303899582
Unmethylated C's in Unknown context 2463826
Percentage methylation (CpG context) 21.4%
Percentage methylation (CHG context) 2.2%
Percentage methylation (CHH context) 2.9%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 7820927 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 7910011 original bottom strand