Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-209_S29_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-209_S29_L004_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 29638248
Paired-end alignments with a unique best hit 17059565
Pairs without alignments under any condition 7251197
Pairs that did not map uniquely 5327486
Genomic sequence context not extractable (edges of chromosomes) 66953

Cytosine Methylation

Total C's analysed 533074436
Methylated C's in CpG context 18134598
Methylated C's in CHG context 2615077
Methylated C's in CHH context 8438068
Methylated C's in Unknown context 273670
Unmethylated C's in CpG context 66214964
Unmethylated C's in CHG context 115564378
Unmethylated C's in CHH context 322107351
Unmethylated C's in Unknown context 2563382
Percentage methylation (CpG context) 21.5%
Percentage methylation (CHG context) 2.2%
Percentage methylation (CHH context) 2.6%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 8361797 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 8630815 original bottom strand