EPI-208_S28_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 10465463 lines in total Total number of methylation call strings processed: 20930926 Final Cytosine Methylation Report ================================= Total number of C's analysed: 216163363 Total methylated C's in CpG context: 7448449 Total methylated C's in CHG context: 1186371 Total methylated C's in CHH context: 3378233 Total C to T conversions in CpG context: 23171580 Total C to T conversions in CHG context: 46394787 Total C to T conversions in CHH context: 134583943 C methylated in CpG context: 24.3% C methylated in CHG context: 2.5% C methylated in CHH context: 2.4%