CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 153651 278827 35.53 432478 2 144593 306929 32.02 451522 3 133487 274072 32.75 407559 4 139273 222967 38.45 362240 5 133980 198116 40.34 332096 6 140254 168630 45.41 308884 7 153819 164075 48.39 317894 8 72007 193463 27.12 265470 9 64687 179510 26.49 244197 10 64164 172296 27.14 236460 11 66824 175242 27.61 242066 12 65239 177054 26.93 242293 13 65237 179949 26.61 245186 14 61848 180779 25.49 242627 15 60565 182279 24.94 242844 16 56481 181513 23.73 237994 17 53648 176644 23.30 230292 18 55761 180914 23.56 236675 19 54545 180882 23.17 235427 20 54951 183479 23.05 238430 21 55358 184595 23.07 239953 22 54058 182636 22.84 236694 23 53849 181350 22.90 235199 24 53338 181556 22.71 234894 25 52686 180265 22.62 232951 26 52676 177104 22.92 229780 27 52510 183229 22.27 235739 28 53815 181980 22.82 235795 29 52593 181167 22.50 233760 30 51235 181165 22.05 232400 31 52674 177686 22.87 230360 32 51378 174498 22.75 225876 33 51951 176830 22.71 228781 34 52513 175075 23.07 227588 35 51787 174856 22.85 226643 36 50799 178115 22.19 228914 37 49355 172674 22.23 222029 38 49362 172407 22.26 221769 39 50512 174709 22.43 225221 40 50338 172036 22.64 222374 41 49726 172274 22.40 222000 42 51169 175673 22.56 226842 43 50554 172779 22.64 223333 44 49212 171357 22.31 220569 45 50348 170793 22.77 221141 46 50267 172075 22.61 222342 47 49641 169446 22.66 219087 48 49479 169834 22.56 219313 49 50722 169938 22.99 220660 50 49539 170720 22.49 220259 51 49233 170334 22.42 219567 52 49901 174758 22.21 224659 53 48581 166587 22.58 215168 54 47702 167189 22.20 214891 55 47538 162954 22.58 210492 56 47574 162543 22.64 210117 57 48851 164700 22.88 213551 58 49851 165445 23.15 215296 59 50098 163247 23.48 213345 60 49297 164298 23.08 213595 61 49686 160731 23.61 210417 62 48624 161905 23.10 210529 63 47628 159482 23.00 207110 64 46781 157714 22.88 204495 65 46960 156045 23.13 203005 66 47677 156575 23.34 204252 67 46346 151247 23.46 197593 68 45515 150953 23.17 196468 69 44543 148841 23.03 193384 70 44340 149309 22.90 193649 71 43772 144985 23.19 188757 72 42757 144768 22.80 187525 73 42295 142553 22.88 184848 74 41738 140738 22.87 182476 75 40662 140605 22.43 181267 76 40721 138869 22.67 179590 77 41090 136914 23.08 178004 78 40378 137463 22.70 177841 79 39759 135414 22.70 175173 80 39132 133738 22.64 172870 81 38247 132299 22.43 170546 82 37664 130555 22.39 168219 83 38145 131678 22.46 169823 84 37571 130379 22.37 167950 85 37191 127826 22.54 165017 86 35956 126048 22.19 162004 87 35290 124649 22.06 159939 88 35317 124041 22.16 159358 89 34661 121739 22.16 156400 90 34604 121714 22.14 156318 91 34088 119403 22.21 153491 92 33403 118837 21.94 152240 93 33108 117940 21.92 151048 94 33068 116099 22.17 149167 95 32383 113730 22.16 146113 96 32226 114693 21.93 146919 97 31735 110510 22.31 142245 98 29380 103655 22.08 133035 99 23024 82360 21.85 105384 100 30746 104288 22.77 135034 101 29369 104996 21.86 134365 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 218788 349408 38.51 568196 2 125868 336709 27.21 462577 3 49345 316615 13.48 365960 4 27506 318340 7.95 345846 5 18561 297200 5.88 315761 6 15514 282231 5.21 297745 7 12900 362474 3.44 375374 8 5820 394495 1.45 400315 9 4930 372355 1.31 377285 10 4799 354239 1.34 359038 11 4990 355623 1.38 360613 12 4951 359352 1.36 364303 13 4483 345082 1.28 349565 14 4248 345649 1.21 349897 15 4376 356528 1.21 360904 16 3764 356014 1.05 359778 17 3984 350789 1.12 354773 18 3881 348339 1.10 352220 19 3537 350864 1.00 354401 20 3844 368109 1.03 371953 21 3656 372002 0.97 375658 22 3969 364831 1.08 368800 23 3840 369532 1.03 373372 24 3714 372687 0.99 376401 25 3721 359919 1.02 363640 26 4252 363393 1.16 367645 27 3895 369111 1.04 373006 28 3796 367046 1.02 370842 29 4045 370888 1.08 374933 30 3776 371145 1.01 374921 31 3867 363330 1.05 367197 32 3902 367200 1.05 371102 33 4005 366997 1.08 371002 34 3988 359934 1.10 363922 35 4222 362714 1.15 366936 36 4023 362373 1.10 366396 37 3833 350362 1.08 354195 38 4149 357569 1.15 361718 39 4036 355876 1.12 359912 40 4007 354988 1.12 358995 41 3968 354170 1.11 358138 42 3893 356228 1.08 360121 43 3781 349022 1.07 352803 44 3881 352869 1.09 356750 45 3899 350323 1.10 354222 46 3720 347592 1.06 351312 47 3868 349868 1.09 353736 48 3813 354943 1.06 358756 49 3893 347166 1.11 351059 50 3868 347098 1.10 350966 51 3841 350135 1.09 353976 52 3799 347475 1.08 351274 53 3959 343038 1.14 346997 54 4010 349215 1.14 353225 55 3946 342960 1.14 346906 56 4168 346346 1.19 350514 57 4303 344812 1.23 349115 58 4435 341860 1.28 346295 59 4680 343852 1.34 348532 60 4552 343754 1.31 348306 61 4721 336558 1.38 341279 62 4734 335693 1.39 340427 63 4745 333038 1.40 337783 64 4736 328369 1.42 333105 65 5061 326407 1.53 331468 66 4557 321212 1.40 325769 67 4672 311816 1.48 316488 68 4633 313050 1.46 317683 69 4484 311349 1.42 315833 70 4514 304518 1.46 309032 71 4406 303770 1.43 308176 72 4337 302930 1.41 307267 73 4411 296967 1.46 301378 74 4545 295705 1.51 300250 75 4291 294012 1.44 298303 76 4211 285578 1.45 289789 77 4471 284585 1.55 289056 78 4184 280026 1.47 284210 79 4151 274338 1.49 278489 80 4185 274867 1.50 279052 81 4069 271260 1.48 275329 82 4017 264943 1.49 268960 83 4268 269266 1.56 273534 84 3924 266602 1.45 270526 85 4145 260427 1.57 264572 86 4184 261799 1.57 265983 87 3987 261828 1.50 265815 88 3856 255701 1.49 259557 89 3946 252321 1.54 256267 90 3891 252580 1.52 256471 91 3997 246658 1.59 250655 92 4129 247568 1.64 251697 93 4260 244451 1.71 248711 94 4107 238548 1.69 242655 95 4040 237585 1.67 241625 96 4209 234534 1.76 238743 97 3985 213886 1.83 217871 98 3675 198067 1.82 201742 99 2234 128200 1.71 130434 100 2738 128366 2.09 131104 101 5622 215427 2.54 221049 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 241032 397456 37.75 638488 2 119561 429908 21.76 549469 3 64406 502917 11.35 567323 4 58233 551008 9.56 609241 5 53304 670231 7.37 723535 6 45321 749329 5.70 794650 7 38809 956159 3.90 994968 8 24441 1042942 2.29 1067383 9 19652 951059 2.02 970711 10 19316 921648 2.05 940964 11 22726 923990 2.40 946716 12 20081 935866 2.10 955947 13 21733 954860 2.23 976593 14 22562 977661 2.26 1000223 15 20540 998886 2.01 1019426 16 19741 1012565 1.91 1032306 17 21928 1019536 2.11 1041464 18 19681 1055205 1.83 1074886 19 20081 1080106 1.83 1100187 20 22365 1114659 1.97 1137024 21 20430 1114184 1.80 1134614 22 21325 1114848 1.88 1136173 23 22512 1109367 1.99 1131879 24 20129 1108421 1.78 1128550 25 21136 1113992 1.86 1135128 26 22577 1124087 1.97 1146664 27 20286 1130945 1.76 1151231 28 20186 1131103 1.75 1151289 29 22894 1128192 1.99 1151086 30 20047 1118939 1.76 1138986 31 20382 1103140 1.81 1123522 32 21531 1100226 1.92 1121757 33 20002 1101232 1.78 1121234 34 21730 1106435 1.93 1128165 35 22448 1096316 2.01 1118764 36 19929 1106391 1.77 1126320 37 19845 1096824 1.78 1116669 38 22536 1101161 2.01 1123697 39 19838 1090315 1.79 1110153 40 19966 1087053 1.80 1107019 41 22187 1087860 2.00 1110047 42 20464 1091674 1.84 1112138 43 21128 1077995 1.92 1099123 44 21500 1084299 1.94 1105799 45 20373 1074199 1.86 1094572 46 20018 1075620 1.83 1095638 47 21147 1073216 1.93 1094363 48 18990 1072589 1.74 1091579 49 19329 1060325 1.79 1079654 50 20724 1055763 1.93 1076487 51 19049 1042903 1.79 1061952 52 19369 1041415 1.83 1060784 53 20638 1032282 1.96 1052920 54 18716 1031409 1.78 1050125 55 19179 1026977 1.83 1046156 56 20898 1021055 2.01 1041953 57 18825 1028704 1.80 1047529 58 19213 1022446 1.84 1041659 59 21250 1019002 2.04 1040252 60 18732 1005684 1.83 1024416 61 19655 995704 1.94 1015359 62 20621 979881 2.06 1000502 63 18545 969371 1.88 987916 64 19335 958981 1.98 978316 65 19911 951172 2.05 971083 66 18137 943141 1.89 961278 67 18071 933950 1.90 952021 68 19215 926428 2.03 945643 69 17641 917274 1.89 934915 70 17324 910194 1.87 927518 71 19174 903929 2.08 923103 72 17246 898244 1.88 915490 73 18418 882378 2.04 900796 74 18897 877487 2.11 896384 75 17448 867012 1.97 884460 76 17157 862457 1.95 879614 77 18885 851715 2.17 870600 78 16389 842000 1.91 858389 79 16803 838002 1.97 854805 80 18006 827050 2.13 845056 81 17114 814858 2.06 831972 82 17123 806835 2.08 823958 83 17818 803132 2.17 820950 84 16672 794566 2.06 811238 85 16328 781978 2.05 798306 86 16996 773512 2.15 790508 87 15430 766842 1.97 782272 88 15512 758240 2.00 773752 89 17152 748545 2.24 765697 90 15353 744195 2.02 759548 91 15690 734154 2.09 749844 92 16796 730665 2.25 747461 93 15462 721119 2.10 736581 94 15403 713612 2.11 729015 95 16628 702263 2.31 718891 96 14845 688338 2.11 703183 97 14817 670599 2.16 685416 98 15455 623437 2.42 638892 99 9585 435647 2.15 445232 100 9813 386560 2.48 396373 101 15720 635794 2.41 651514 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 105794 146158 41.99 251952 2 94536 134676 41.24 229212 3 102434 149428 40.67 251862 4 95221 170436 35.84 265657 5 41374 225091 15.53 266465 6 24151 121041 16.63 145192 7 21528 127741 14.42 149269 8 23088 122186 15.89 145274 9 20028 106181 15.87 126209 10 22365 118780 15.85 141145 11 23497 114294 17.05 137791 12 22865 110368 17.16 133233 13 23767 107455 18.11 131222 14 25290 110011 18.69 135301 15 24231 100603 19.41 124834 16 22959 97125 19.12 120084 17 27584 104686 20.85 132270 18 26668 101816 20.76 128484 19 25924 98783 20.79 124707 20 24204 98084 19.79 122288 21 25124 95273 20.87 120397 22 24450 98530 19.88 122980 23 23350 93216 20.03 116566 24 22666 88949 20.31 111615 25 24372 91743 20.99 116115 26 22781 88145 20.54 110926 27 24434 88828 21.57 113262 28 22571 83688 21.24 106259 29 22925 87434 20.77 110359 30 22396 81515 21.55 103911 31 21607 83985 20.46 105592 32 20642 78720 20.77 99362 33 22923 79437 22.39 102360 34 22211 82460 21.22 104671 35 26512 85666 23.63 112178 36 22213 76301 22.55 98514 37 22297 78950 22.02 101247 38 20850 76106 21.50 96956 39 21111 73251 22.37 94362 40 22320 73847 23.21 96167 41 19972 73043 21.47 93015 42 20131 73070 21.60 93201 43 20212 71641 22.00 91853 44 18943 68180 21.74 87123 45 22205 73453 23.21 95658 46 18323 64502 22.12 82825 47 18856 66650 22.05 85506 48 18746 65251 22.32 83997 49 17596 67176 20.76 84772 50 16747 60196 21.77 76943 51 17143 58935 22.53 76078 52 17251 60841 22.09 78092 53 16861 58454 22.39 75315 54 16590 58513 22.09 75103 55 16468 56027 22.72 72495 56 15576 55014 22.07 70590 57 15660 54726 22.25 70386 58 15208 54522 21.81 69730 59 14388 50545 22.16 64933 60 14779 50253 22.73 65032 61 13105 48941 21.12 62046 62 13207 47743 21.67 60950 63 13997 47125 22.90 61122 64 13403 47736 21.92 61139 65 13263 44896 22.80 58159 66 13673 46503 22.72 60176 67 12845 46229 21.74 59074 68 13605 47228 22.36 60833 69 12597 44430 22.09 57027 70 12593 43396 22.49 55989 71 12303 40638 23.24 52941 72 12068 40436 22.98 52504 73 11630 41616 21.84 53246 74 11136 40252 21.67 51388 75 11240 39646 22.09 50886 76 11438 38665 22.83 50103 77 11046 38595 22.25 49641 78 10957 38443 22.18 49400 79 10693 37038 22.40 47731 80 10264 36240 22.07 46504 81 10152 36711 21.66 46863 82 10363 36229 22.24 46592 83 10446 34152 23.42 44598 84 11220 36508 23.51 47728 85 10020 35029 22.24 45049 86 9717 34632 21.91 44349 87 9717 34008 22.22 43725 88 9645 33171 22.53 42816 89 10092 33607 23.09 43699 90 9830 33594 22.64 43424 91 9486 32517 22.58 42003 92 9137 32180 22.11 41317 93 9121 32416 21.96 41537 94 9312 31325 22.92 40637 95 9186 30999 22.86 40185 96 8717 30880 22.01 39597 97 9451 31576 23.04 41027 98 8584 29486 22.55 38070 99 7608 0 100.00 7608 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 40170 192816 17.24 232986 2 42199 200630 17.38 242829 3 39920 207133 16.16 247053 4 43210 215280 16.72 258490 5 4269 397811 1.06 402080 6 3284 490403 0.67 493687 7 1987 270352 0.73 272339 8 2133 288865 0.73 290998 9 1913 245158 0.77 247071 10 1944 232123 0.83 234067 11 2786 303803 0.91 306589 12 2060 244712 0.83 246772 13 1956 242021 0.80 243977 14 2015 238406 0.84 240421 15 2028 228200 0.88 230228 16 1918 210231 0.90 212149 17 2009 227021 0.88 229030 18 2230 200097 1.10 202327 19 2183 200992 1.07 203175 20 2471 200078 1.22 202549 21 2711 190903 1.40 193614 22 2681 206454 1.28 209135 23 2523 201491 1.24 204014 24 2247 184347 1.20 186594 25 2372 186522 1.26 188894 26 2669 196317 1.34 198986 27 2442 181938 1.32 184380 28 2412 172466 1.38 174878 29 2424 185989 1.29 188413 30 2639 174492 1.49 177131 31 2494 171360 1.43 173854 32 2496 174352 1.41 176848 33 2711 196866 1.36 199577 34 2625 167546 1.54 170171 35 2533 170076 1.47 172609 36 2435 165547 1.45 167982 37 2329 156327 1.47 158656 38 2664 165242 1.59 167906 39 2664 156678 1.67 159342 40 2536 150568 1.66 153104 41 2631 146070 1.77 148701 42 2616 136076 1.89 138692 43 2841 141425 1.97 144266 44 2320 140528 1.62 142848 45 2229 127426 1.72 129655 46 2395 127675 1.84 130070 47 2484 130834 1.86 133318 48 2250 124835 1.77 127085 49 2370 127082 1.83 129452 50 2373 123977 1.88 126350 51 2169 115078 1.85 117247 52 2163 113157 1.88 115320 53 2510 124940 1.97 127450 54 2025 113226 1.76 115251 55 2101 114690 1.80 116791 56 1986 112055 1.74 114041 57 1997 107188 1.83 109185 58 1810 106936 1.66 108746 59 1427 105729 1.33 107156 60 1118 101767 1.09 102885 61 1034 100148 1.02 101182 62 1014 103882 0.97 104896 63 977 104993 0.92 105970 64 942 94727 0.98 95669 65 986 100547 0.97 101533 66 891 91703 0.96 92594 67 940 98831 0.94 99771 68 953 96743 0.98 97696 69 871 93209 0.93 94080 70 847 92453 0.91 93300 71 924 94177 0.97 95101 72 831 86843 0.95 87674 73 845 88031 0.95 88876 74 840 88867 0.94 89707 75 747 84737 0.87 85484 76 781 82277 0.94 83058 77 813 87526 0.92 88339 78 763 83477 0.91 84240 79 766 82296 0.92 83062 80 797 79684 0.99 80481 81 775 77278 0.99 78053 82 745 76138 0.97 76883 83 787 77856 1.00 78643 84 716 74024 0.96 74740 85 758 80631 0.93 81389 86 727 73976 0.97 74703 87 740 73721 0.99 74461 88 701 70215 0.99 70916 89 744 75511 0.98 76255 90 758 72717 1.03 73475 91 733 73799 0.98 74532 92 711 72097 0.98 72808 93 697 68416 1.01 69113 94 649 66971 0.96 67620 95 694 68994 1.00 69688 96 694 65805 1.04 66499 97 673 65906 1.01 66579 98 553 63431 0.86 63984 99 453 0 100.00 453 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 65503 286144 18.63 351647 2 53990 241694 18.26 295684 3 52638 235518 18.27 288156 4 53648 224556 19.28 278204 5 11424 438742 2.54 450166 6 11186 598160 1.84 609346 7 12219 794208 1.52 806427 8 11443 788495 1.43 799938 9 12404 734643 1.66 747047 10 11880 755295 1.55 767175 11 11660 744602 1.54 756262 12 11193 690028 1.60 701221 13 10923 715061 1.50 725984 14 11508 722314 1.57 733822 15 11206 727704 1.52 738910 16 10560 689995 1.51 700555 17 11208 697330 1.58 708538 18 10754 693810 1.53 704564 19 10044 645748 1.53 655792 20 11757 674056 1.71 685813 21 11087 631601 1.73 642688 22 11429 618534 1.81 629963 23 11017 601138 1.80 612155 24 10133 573454 1.74 583587 25 11018 569900 1.90 580918 26 10512 563518 1.83 574030 27 11174 592747 1.85 603921 28 10476 573368 1.79 583844 29 10572 564885 1.84 575457 30 10793 541643 1.95 552436 31 10421 526062 1.94 536483 32 9964 506074 1.93 516038 33 10875 496840 2.14 507715 34 9988 494846 1.98 504834 35 10946 505859 2.12 516805 36 10298 502553 2.01 512851 37 9797 490267 1.96 500064 38 10505 504009 2.04 514514 39 10258 469904 2.14 480162 40 10061 481444 2.05 491505 41 9933 457711 2.12 467644 42 9856 460127 2.10 469983 43 9915 436519 2.22 446434 44 9161 437117 2.05 446278 45 9631 431153 2.18 440784 46 9244 432799 2.09 442043 47 8860 422706 2.05 431566 48 9006 409579 2.15 418585 49 8610 409142 2.06 417752 50 8433 401016 2.06 409449 51 8468 389213 2.13 397681 52 8037 370051 2.13 378088 53 8016 370484 2.12 378500 54 7520 358123 2.06 365643 55 7362 366074 1.97 373436 56 7338 358989 2.00 366327 57 7019 360965 1.91 367984 58 6680 351824 1.86 358504 59 6666 339068 1.93 345734 60 6011 344100 1.72 350111 61 6350 328279 1.90 334629 62 5790 326502 1.74 332292 63 5614 324838 1.70 330452 64 5703 317300 1.77 323003 65 5451 318462 1.68 323913 66 5320 309779 1.69 315099 67 5370 308317 1.71 313687 68 5464 315012 1.70 320476 69 5376 306246 1.73 311622 70 5396 298524 1.78 303920 71 5021 293662 1.68 298683 72 5339 292011 1.80 297350 73 5081 285590 1.75 290671 74 4952 288336 1.69 293288 75 5043 286499 1.73 291542 76 4705 276473 1.67 281178 77 5125 272771 1.84 277896 78 4991 275157 1.78 280148 79 4772 277432 1.69 282204 80 4830 268567 1.77 273397 81 4957 268827 1.81 273784 82 4993 264970 1.85 269963 83 4522 262401 1.69 266923 84 4839 262100 1.81 266939 85 4537 255522 1.74 260059 86 4457 254425 1.72 258882 87 4392 249561 1.73 253953 88 4287 245595 1.72 249882 89 4087 242071 1.66 246158 90 4237 242162 1.72 246399 91 4199 238761 1.73 242960 92 4024 236917 1.67 240941 93 3903 233195 1.65 237098 94 3893 229053 1.67 232946 95 4010 225985 1.74 229995 96 3860 225368 1.68 229228 97 3646 223741 1.60 227387 98 3441 214183 1.58 217624 99 2457 0 100.00 2457