Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-208_S28_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-208_S28_L004_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 29146503
Paired-end alignments with a unique best hit 14427353
Pairs without alignments under any condition 9939248
Pairs that did not map uniquely 4779902
Genomic sequence context not extractable (edges of chromosomes) 106064

Cytosine Methylation

Total C's analysed 433521822
Methylated C's in CpG context 12718337
Methylated C's in CHG context 2209753
Methylated C's in CHH context 5655296
Methylated C's in Unknown context 174499
Unmethylated C's in CpG context 51126806
Unmethylated C's in CHG context 96629217
Unmethylated C's in CHH context 265182413
Unmethylated C's in Unknown context 2319878
Percentage methylation (CpG context) 19.9%
Percentage methylation (CHG context) 2.2%
Percentage methylation (CHH context) 2.1%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 7134855 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 7186434 original bottom strand