CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 127489 194260 39.62 321749 2 123497 219528 36.00 343025 3 118242 203674 36.73 321916 4 124906 171963 42.07 296869 5 120800 149374 44.71 270174 6 126842 125681 50.23 252523 7 140093 122976 53.25 263069 8 64616 145230 30.79 209846 9 57297 133390 30.05 190687 10 56626 129929 30.35 186555 11 59430 133547 30.80 192977 12 58154 135227 30.07 193381 13 57979 137843 29.61 195822 14 55569 140608 28.33 196177 15 55019 141374 28.01 196393 16 50957 141670 26.45 192627 17 48413 137987 25.97 186400 18 49670 140798 26.08 190468 19 49005 141519 25.72 190524 20 49017 143973 25.40 192990 21 48740 144797 25.18 193537 22 48189 142898 25.22 191087 23 48003 141327 25.35 189330 24 47400 142099 25.01 189499 25 46805 141568 24.85 188373 26 47739 140085 25.42 187824 27 47089 143579 24.70 190668 28 48642 142887 25.40 191529 29 47089 143349 24.73 190438 30 46369 143371 24.44 189740 31 47166 141157 25.05 188323 32 46276 138481 25.05 184757 33 46907 142291 24.79 189198 34 47186 139902 25.22 187088 35 46824 140103 25.05 186927 36 46344 142631 24.52 188975 37 45136 138677 24.56 183813 38 44373 138192 24.31 182565 39 46006 140506 24.67 186512 40 45500 138013 24.79 183513 41 45079 137639 24.67 182718 42 45846 141167 24.51 187013 43 45038 138937 24.48 183975 44 44734 137260 24.58 181994 45 45032 137647 24.65 182679 46 45721 138519 24.82 184240 47 44577 137296 24.51 181873 48 44389 137629 24.39 182018 49 46452 136924 25.33 183376 50 44271 137392 24.37 181663 51 44458 136255 24.60 180713 52 45214 139498 24.48 184712 53 43661 134661 24.48 178322 54 43329 134442 24.37 177771 55 43589 132141 24.80 175730 56 43414 131727 24.79 175141 57 44153 133642 24.83 177795 58 45017 133767 25.18 178784 59 45435 131510 25.68 176945 60 45224 132836 25.40 178060 61 45331 130588 25.77 175919 62 44236 130638 25.30 174874 63 43236 130435 24.90 173671 64 43075 128664 25.08 171739 65 42903 127378 25.20 170281 66 43318 127385 25.38 170703 67 42635 123999 25.59 166634 68 42018 124083 25.30 166101 69 41167 122483 25.16 163650 70 40626 122441 24.91 163067 71 40255 119286 25.23 159541 72 39795 119257 25.02 159052 73 39481 117676 25.12 157157 74 38893 117064 24.94 155957 75 37457 115969 24.41 153426 76 37536 116336 24.39 153872 77 38051 113594 25.09 151645 78 37528 115185 24.57 152713 79 37097 113077 24.70 150174 80 36431 111818 24.57 148249 81 35776 110690 24.43 146466 82 34877 109530 24.15 144407 83 35904 110372 24.55 146276 84 35414 109904 24.37 145318 85 35027 106825 24.69 141852 86 33615 105736 24.12 139351 87 32933 106114 23.68 139047 88 33401 105028 24.13 138429 89 32574 102492 24.12 135066 90 32465 103121 23.94 135586 91 32191 100520 24.26 132711 92 31565 100441 23.91 132006 93 31101 100323 23.66 131424 94 31097 98173 24.06 129270 95 30373 97455 23.76 127828 96 30650 97546 23.91 128196 97 29647 94772 23.83 124419 98 27693 88125 23.91 115818 99 21958 70219 23.82 92177 100 28650 88404 24.48 117054 101 27914 89276 23.82 117190 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 176012 264452 39.96 440464 2 101637 265509 27.68 367146 3 42087 257543 14.05 299630 4 24533 249968 8.94 274501 5 17283 227882 7.05 245165 6 14919 214712 6.50 229631 7 11712 276392 4.07 288104 8 5595 301521 1.82 307116 9 4614 287299 1.58 291913 10 4644 278692 1.64 283336 11 4907 281285 1.71 286192 12 4723 281247 1.65 285970 13 4537 272201 1.64 276738 14 4168 272602 1.51 276770 15 4256 282645 1.48 286901 16 3604 281251 1.27 284855 17 4423 278935 1.56 283358 18 3879 277483 1.38 281362 19 3419 278243 1.21 281662 20 3783 293855 1.27 297638 21 3658 296964 1.22 300622 22 3934 290425 1.34 294359 23 3940 296459 1.31 300399 24 3747 299518 1.24 303265 25 3651 288205 1.25 291856 26 4710 290989 1.59 295699 27 3774 295206 1.26 298980 28 3722 294887 1.25 298609 29 4333 298227 1.43 302560 30 3537 298828 1.17 302365 31 3554 290821 1.21 294375 32 3605 295884 1.20 299489 33 3827 296172 1.28 299999 34 3713 290262 1.26 293975 35 4482 292899 1.51 297381 36 3709 293957 1.25 297666 37 3688 284975 1.28 288663 38 4283 289415 1.46 293698 39 3793 287677 1.30 291470 40 3701 287369 1.27 291070 41 3657 289508 1.25 293165 42 3653 288824 1.25 292477 43 3560 282889 1.24 286449 44 3402 286359 1.17 289761 45 3432 285305 1.19 288737 46 3530 283792 1.23 287322 47 3758 283884 1.31 287642 48 3414 290469 1.16 293883 49 3544 282839 1.24 286383 50 3840 281645 1.35 285485 51 3601 285888 1.24 289489 52 3599 283965 1.25 287564 53 3651 279509 1.29 283160 54 3930 284494 1.36 288424 55 3722 280908 1.31 284630 56 3883 283293 1.35 287176 57 3770 282666 1.32 286436 58 3999 278910 1.41 282909 59 4288 281002 1.50 285290 60 4132 281695 1.45 285827 61 4150 275946 1.48 280096 62 4368 275206 1.56 279574 63 4327 272930 1.56 277257 64 4243 268989 1.55 273232 65 5033 268314 1.84 273347 66 4217 263783 1.57 268000 67 4246 257176 1.62 261422 68 4599 259321 1.74 263920 69 3938 257647 1.51 261585 70 3931 252796 1.53 256727 71 4029 251847 1.57 255876 72 3918 251940 1.53 255858 73 4037 247297 1.61 251334 74 4388 246152 1.75 250540 75 3777 246462 1.51 250239 76 3722 236642 1.55 240364 77 4154 239860 1.70 244014 78 3828 235016 1.60 238844 79 3760 229844 1.61 233604 80 3733 231353 1.59 235086 81 3685 226775 1.60 230460 82 3570 222008 1.58 225578 83 3733 226467 1.62 230200 84 3749 225070 1.64 228819 85 3763 219584 1.68 223347 86 3765 220795 1.68 224560 87 3621 221897 1.61 225518 88 3571 215149 1.63 218720 89 3903 214075 1.79 217978 90 3565 213699 1.64 217264 91 3604 209107 1.69 212711 92 3844 209885 1.80 213729 93 3953 207635 1.87 211588 94 3681 202369 1.79 206050 95 3778 201599 1.84 205377 96 3839 200440 1.88 204279 97 3754 181172 2.03 184926 98 3419 168815 1.99 172234 99 2101 108986 1.89 111087 100 2611 109502 2.33 112113 101 5114 182590 2.72 187704 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 218698 330960 39.79 549658 2 124346 366861 25.31 491207 3 74128 423925 14.88 498053 4 69481 445868 13.48 515349 5 67176 536375 11.13 603551 6 56577 595817 8.67 652394 7 45307 768035 5.57 813342 8 34815 843230 3.97 878045 9 26455 769497 3.32 795952 10 26222 743840 3.41 770062 11 33582 745577 4.31 779159 12 28549 749699 3.67 778248 13 31811 762842 4.00 794653 14 34524 782600 4.23 817124 15 29557 800873 3.56 830430 16 29091 808578 3.47 837669 17 33790 816508 3.97 850298 18 28072 845532 3.21 873604 19 28250 862263 3.17 890513 20 33210 888826 3.60 922036 21 28806 888230 3.14 917036 22 31051 887434 3.38 918485 23 33889 884353 3.69 918242 24 28946 881506 3.18 910452 25 31050 884493 3.39 915543 26 33854 892512 3.65 926366 27 29171 897740 3.15 926911 28 29006 901503 3.12 930509 29 33950 897308 3.65 931258 30 28886 889027 3.15 917913 31 29439 878120 3.24 907559 32 31757 878462 3.49 910219 33 28856 881433 3.17 910289 34 32006 884350 3.49 916356 35 33382 877306 3.67 910688 36 28764 883790 3.15 912554 37 28279 877250 3.12 905529 38 34003 881825 3.71 915828 39 28144 875947 3.11 904091 40 28744 872042 3.19 900786 41 33433 874150 3.68 907583 42 29529 877543 3.26 907072 43 30909 867353 3.44 898262 44 32561 874194 3.59 906755 45 29944 862832 3.35 892776 46 28981 867385 3.23 896366 47 31808 866440 3.54 898248 48 27236 865652 3.05 892888 49 27792 855600 3.15 883392 50 31359 855282 3.54 886641 51 27335 845506 3.13 872841 52 28816 841737 3.31 870553 53 31188 835103 3.60 866291 54 27368 836266 3.17 863634 55 28412 831443 3.30 859855 56 31179 826342 3.64 857521 57 27129 833669 3.15 860798 58 27645 828017 3.23 855662 59 31595 825552 3.69 857147 60 26780 815869 3.18 842649 61 28725 808593 3.43 837318 62 30577 798101 3.69 828678 63 26734 790942 3.27 817676 64 28410 783467 3.50 811877 65 29837 777049 3.70 806886 66 26073 770848 3.27 796921 67 26322 765994 3.32 792316 68 28759 757290 3.66 786049 69 25426 753357 3.26 778783 70 25707 746792 3.33 772499 71 28667 744084 3.71 772751 72 25336 740433 3.31 765769 73 27754 728038 3.67 755792 74 28179 723683 3.75 751862 75 25081 717370 3.38 742451 76 24891 712336 3.38 737227 77 28801 703800 3.93 732601 78 23820 698356 3.30 722176 79 24600 692836 3.43 717436 80 27342 688823 3.82 716165 81 24547 675905 3.50 700452 82 25424 669325 3.66 694749 83 27462 668396 3.95 695858 84 24500 659365 3.58 683865 85 23552 650432 3.49 673984 86 25710 642102 3.85 667812 87 22664 637376 3.43 660040 88 22166 631617 3.39 653783 89 25671 623773 3.95 649444 90 22178 621463 3.45 643641 91 23207 613642 3.64 636849 92 24738 609895 3.90 634633 93 22125 603196 3.54 625321 94 22034 596427 3.56 618461 95 24738 588361 4.03 613099 96 21049 577203 3.52 598252 97 21140 563071 3.62 584211 98 22651 523830 4.14 546481 99 12709 365458 3.36 378167 100 14277 324114 4.22 338391 101 22254 533652 4.00 555906 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 106289 128479 45.27 234768 2 93243 113020 45.21 206263 3 98664 126443 43.83 225107 4 90275 141501 38.95 231776 5 39407 184103 17.63 223510 6 24125 101017 19.28 125142 7 21016 107026 16.41 128042 8 22057 101040 17.92 123097 9 19531 86197 18.47 105728 10 20956 95882 17.94 116838 11 22349 94280 19.16 116629 12 21904 91249 19.36 113153 13 22642 88332 20.40 110974 14 23260 91258 20.31 114518 15 22527 82072 21.54 104599 16 21109 79416 21.00 100525 17 25927 85747 23.22 111674 18 24792 81995 23.22 106787 19 23955 82227 22.56 106182 20 22260 79304 21.92 101564 21 23234 76950 23.19 100184 22 22855 80138 22.19 102993 23 21783 74965 22.52 96748 24 20642 73535 21.92 94177 25 22616 75213 23.12 97829 26 21039 71836 22.65 92875 27 22875 72522 23.98 95397 28 20714 68424 23.24 89138 29 21563 71984 23.05 93547 30 20685 67462 23.47 88147 31 19948 70137 22.14 90085 32 19137 66182 22.43 85319 33 21466 65625 24.65 87091 34 20865 68238 23.42 89103 35 24869 72575 25.52 97444 36 20360 64770 23.92 85130 37 21213 66974 24.05 88187 38 19375 63888 23.27 83263 39 19924 63060 24.01 82984 40 21327 62911 25.32 84238 41 18575 61441 23.21 80016 42 19113 62442 23.44 81555 43 18814 60903 23.60 79717 44 17776 58522 23.30 76298 45 21271 63289 25.15 84560 46 17171 55030 23.78 72201 47 17353 57081 23.31 74434 48 17753 56023 24.06 73776 49 16596 58649 22.06 75245 50 15853 52988 23.03 68841 51 16062 52085 23.57 68147 52 16179 53694 23.15 69873 53 16164 51759 23.80 67923 54 15950 51563 23.63 67513 55 15622 48935 24.20 64557 56 14578 48251 23.20 62829 57 14999 48923 23.46 63922 58 14551 48628 23.03 63179 59 13843 44886 23.57 58729 60 14200 44861 24.04 59061 61 12532 44627 21.92 57159 62 12781 42367 23.18 55148 63 13586 41844 24.51 55430 64 12887 42678 23.19 55565 65 12714 39870 24.18 52584 66 13155 41718 23.97 54873 67 12410 42736 22.50 55146 68 13381 43400 23.57 56781 69 12259 40304 23.32 52563 70 11772 39810 22.82 51582 71 12187 36946 24.80 49133 72 11545 36605 23.98 48150 73 11359 36815 23.58 48174 74 10678 36660 22.56 47338 75 10747 36695 22.65 47442 76 10852 34782 23.78 45634 77 10668 35418 23.15 46086 78 10691 35439 23.18 46130 79 10114 33601 23.14 43715 80 9918 33009 23.10 42927 81 9807 33502 22.64 43309 82 9992 33276 23.09 43268 83 9951 31604 23.95 41555 84 11018 34374 24.27 45392 85 9561 32280 22.85 41841 86 9528 31900 23.00 41428 87 9561 31328 23.38 40889 88 9409 30613 23.51 40022 89 9814 31117 23.98 40931 90 9766 31004 23.95 40770 91 8926 30121 22.86 39047 92 8889 29462 23.18 38351 93 8755 29179 23.08 37934 94 9357 29334 24.18 38691 95 9025 28616 23.98 37641 96 8581 28308 23.26 36889 97 9425 29971 23.92 39396 98 8362 26924 23.70 35286 99 7492 0 100.00 7492 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 33386 157355 17.50 190741 2 33521 160706 17.26 194227 3 31161 165865 15.82 197026 4 33733 177873 15.94 211606 5 4568 323403 1.39 327971 6 3087 394868 0.78 397955 7 2031 223680 0.90 225711 8 2122 239322 0.88 241444 9 1976 198317 0.99 200293 10 2045 188465 1.07 190510 11 2947 253902 1.15 256849 12 2220 200925 1.09 203145 13 1935 200211 0.96 202146 14 2019 192734 1.04 194753 15 2131 189236 1.11 191367 16 1936 174844 1.10 176780 17 2127 187305 1.12 189432 18 2486 164233 1.49 166719 19 2134 164625 1.28 166759 20 2270 163939 1.37 166209 21 2713 154585 1.72 157298 22 2408 170548 1.39 172956 23 2329 167492 1.37 169821 24 1924 150282 1.26 152206 25 2237 153462 1.44 155699 26 2361 160600 1.45 162961 27 2232 149548 1.47 151780 28 2101 144404 1.43 146505 29 2266 155310 1.44 157576 30 2192 145027 1.49 147219 31 2206 141008 1.54 143214 32 2134 143079 1.47 145213 33 2453 167276 1.45 169729 34 2105 138623 1.50 140728 35 2318 142782 1.60 145100 36 2170 140586 1.52 142756 37 2045 131019 1.54 133064 38 2240 140018 1.57 142258 39 2362 130548 1.78 132910 40 2092 128153 1.61 130245 41 2213 123331 1.76 125544 42 2109 114822 1.80 116931 43 2393 121819 1.93 124212 44 2042 118353 1.70 120395 45 1950 108573 1.76 110523 46 1991 109393 1.79 111384 47 2171 111858 1.90 114029 48 2057 106554 1.89 108611 49 2062 111616 1.81 113678 50 2148 107390 1.96 109538 51 1899 100301 1.86 102200 52 1980 98714 1.97 100694 53 2219 108960 2.00 111179 54 1913 98601 1.90 100514 55 1958 99831 1.92 101789 56 1732 97282 1.75 99014 57 2011 93685 2.10 95696 58 1710 94412 1.78 96122 59 1375 94349 1.44 95724 60 1396 89464 1.54 90860 61 1240 88989 1.37 90229 62 1171 93160 1.24 94331 63 1042 92807 1.11 93849 64 953 83150 1.13 84103 65 1066 89710 1.17 90776 66 1022 80682 1.25 81704 67 1001 89118 1.11 90119 68 974 86366 1.12 87340 69 961 82860 1.15 83821 70 969 82210 1.16 83179 71 932 85391 1.08 86323 72 884 77577 1.13 78461 73 851 77629 1.08 78480 74 833 79773 1.03 80606 75 856 74894 1.13 75750 76 774 73879 1.04 74653 77 955 78917 1.20 79872 78 858 75124 1.13 75982 79 832 74586 1.10 75418 80 837 71563 1.16 72400 81 849 69177 1.21 70026 82 864 68318 1.25 69182 83 792 70059 1.12 70851 84 823 66280 1.23 67103 85 860 74073 1.15 74933 86 807 67341 1.18 68148 87 828 67187 1.22 68015 88 782 63579 1.22 64361 89 821 67738 1.20 68559 90 802 66277 1.20 67079 91 838 67945 1.22 68783 92 782 65383 1.18 66165 93 766 62041 1.22 62807 94 747 60114 1.23 60861 95 812 62156 1.29 62968 96 865 58908 1.45 59773 97 748 58917 1.25 59665 98 665 58010 1.13 58675 99 619 0 100.00 619 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 58991 213760 21.63 272751 2 50970 176886 22.37 227856 3 51333 178111 22.37 229444 4 51434 173536 22.86 224970 5 18212 345137 5.01 363349 6 17433 475881 3.53 493314 7 18060 636489 2.76 654549 8 16809 631543 2.59 648352 9 19273 591102 3.16 610375 10 17113 605246 2.75 622359 11 17219 597826 2.80 615045 12 16291 555204 2.85 571495 13 15672 574965 2.65 590637 14 16421 579173 2.76 595594 15 15922 594300 2.61 610222 16 14288 567262 2.46 581550 17 15875 569865 2.71 585740 18 15333 567114 2.63 582447 19 13920 526801 2.57 540721 20 16217 555804 2.84 572021 21 15627 514707 2.95 530334 22 15911 501885 3.07 517796 23 15695 492363 3.09 508058 24 14204 468102 2.95 482306 25 15621 467840 3.23 483461 26 14835 464309 3.10 479144 27 15446 490213 3.05 505659 28 14634 472833 3.00 487467 29 14726 466324 3.06 481050 30 15434 446873 3.34 462307 31 14530 431627 3.26 446157 32 14289 418983 3.30 433272 33 15277 411965 3.58 427242 34 14274 411681 3.35 425955 35 15053 422088 3.44 437141 36 13843 419665 3.19 433508 37 13687 410301 3.23 423988 38 14795 424331 3.37 439126 39 14348 393237 3.52 407585 40 13937 407807 3.30 421744 41 14243 384697 3.57 398940 42 13816 390224 3.42 404040 43 13943 369765 3.63 383708 44 12890 367888 3.39 380778 45 13642 366911 3.58 380553 46 12910 366119 3.41 379029 47 12346 359454 3.32 371800 48 12730 346704 3.54 359434 49 12139 350330 3.35 362469 50 12093 345221 3.38 357314 51 12374 334603 3.57 346977 52 11427 316432 3.49 327859 53 11475 318403 3.48 329878 54 10833 309685 3.38 320518 55 10482 318391 3.19 328873 56 10745 309727 3.35 320472 57 10343 312353 3.21 322696 58 9651 305185 3.07 314836 59 9933 291812 3.29 301745 60 9117 298344 2.97 307461 61 9855 284080 3.35 293935 62 9195 280836 3.17 290031 63 8826 281827 3.04 290653 64 9246 273435 3.27 282681 65 8771 277634 3.06 286405 66 8761 268806 3.16 277567 67 8345 268063 3.02 276408 68 8468 277057 2.97 285525 69 8729 269580 3.14 278309 70 8220 261518 3.05 269738 71 8112 255941 3.07 264053 72 8588 255177 3.26 263765 73 8096 249246 3.15 257342 74 7719 249423 3.00 257142 75 7926 250202 3.07 258128 76 7546 240498 3.04 248044 77 8065 239833 3.25 247898 78 7986 240614 3.21 248600 79 7579 244839 3.00 252418 80 7787 237003 3.18 244790 81 7919 237225 3.23 245144 82 7708 232130 3.21 239838 83 7274 232081 3.04 239355 84 7577 230962 3.18 238539 85 7146 225583 3.07 232729 86 7192 223439 3.12 230631 87 7033 220632 3.09 227665 88 6949 214606 3.14 221555 89 6941 213290 3.15 220231 90 6916 213993 3.13 220909 91 6761 210938 3.11 217699 92 6444 209691 2.98 216135 93 6448 206762 3.02 213210 94 5964 203798 2.84 209762 95 6292 199444 3.06 205736 96 5995 197789 2.94 203784 97 5893 197291 2.90 203184 98 5500 189405 2.82 194905 99 3977 0 100.00 3977