Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-206_S27_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-206_S27_L004_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 20931018
Paired-end alignments with a unique best hit 11521920
Pairs without alignments under any condition 5600370
Pairs that did not map uniquely 3808728
Genomic sequence context not extractable (edges of chromosomes) 45946

Cytosine Methylation

Total C's analysed 353645201
Methylated C's in CpG context 11668408
Methylated C's in CHG context 1871252
Methylated C's in CHH context 7299277
Methylated C's in Unknown context 237164
Unmethylated C's in CpG context 44163722
Unmethylated C's in CHG context 77079068
Unmethylated C's in CHH context 211563474
Unmethylated C's in Unknown context 1710102
Percentage methylation (CpG context) 20.9%
Percentage methylation (CHG context) 2.4%
Percentage methylation (CHH context) 3.3%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 5661049 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 5814925 original bottom strand