EPI-205_S26_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 5797934 lines in total Total number of methylation call strings processed: 11595868 Final Cytosine Methylation Report ================================= Total number of C's analysed: 118376493 Total methylated C's in CpG context: 4570560 Total methylated C's in CHG context: 700456 Total methylated C's in CHH context: 2921486 Total C to T conversions in CpG context: 12573772 Total C to T conversions in CHG context: 24922800 Total C to T conversions in CHH context: 72687419 C methylated in CpG context: 26.7% C methylated in CHG context: 2.7% C methylated in CHH context: 3.9%