CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 85470 138388 38.18 223858 2 83401 158257 34.51 241658 3 79912 143599 35.75 223511 4 83755 118314 41.45 202069 5 82600 102834 44.54 185434 6 85140 85921 49.77 171061 7 96201 84522 53.23 180723 8 44514 98519 31.12 143033 9 39390 90014 30.44 129404 10 38602 89141 30.22 127743 11 40721 91476 30.80 132197 12 39533 92590 29.92 132123 13 38918 95043 29.05 133961 14 37716 96130 28.18 133846 15 37042 96430 27.75 133472 16 34371 96240 26.32 130611 17 33201 94144 26.07 127345 18 34428 96877 26.22 131305 19 33152 96164 25.64 129316 20 34018 97857 25.80 131875 21 33398 99295 25.17 132693 22 32917 98481 25.05 131398 23 32585 96385 25.27 128970 24 32585 96716 25.20 129301 25 31999 96581 24.89 128580 26 32701 95367 25.53 128068 27 32298 97383 24.91 129681 28 33365 97901 25.42 131266 29 32178 97933 24.73 130111 30 31099 98409 24.01 129508 31 32051 95795 25.07 127846 32 31227 94340 24.87 125567 33 31865 95702 24.98 127567 34 32242 95052 25.33 127294 35 31777 95677 24.93 127454 36 31222 96585 24.43 127807 37 30453 94253 24.42 124706 38 29877 93898 24.14 123775 39 31238 95082 24.73 126320 40 31247 93367 25.08 124614 41 30582 93398 24.67 123980 42 31496 95435 24.81 126931 43 30699 93807 24.66 124506 44 29918 92644 24.41 122562 45 30463 92774 24.72 123237 46 30497 94030 24.49 124527 47 30443 92472 24.77 122915 48 29568 93082 24.11 122650 49 30889 92471 25.04 123360 50 30109 92729 24.51 122838 51 30090 92698 24.51 122788 52 30398 94599 24.32 124997 53 29440 90556 24.53 119996 54 28956 90852 24.17 119808 55 28952 89540 24.43 118492 56 29139 89391 24.58 118530 57 29919 89493 25.06 119412 58 30365 89848 25.26 120213 59 30678 88805 25.68 119483 60 30135 89504 25.19 119639 61 30547 87942 25.78 118489 62 29543 88118 25.11 117661 63 29148 87311 25.03 116459 64 28884 86931 24.94 115815 65 29030 84898 25.48 113928 66 29467 85210 25.70 114677 67 28547 83007 25.59 111554 68 27925 82658 25.25 110583 69 27759 81882 25.32 109641 70 27675 81188 25.42 108863 71 26594 79278 25.12 105872 72 26426 78680 25.14 105106 73 25751 77955 24.83 103706 74 25599 76956 24.96 102555 75 25225 77223 24.62 102448 76 24898 77020 24.43 101918 77 25368 75365 25.18 100733 78 25268 75653 25.04 100921 79 24336 73806 24.80 98142 80 24301 73152 24.94 97453 81 23533 72367 24.54 95900 82 23040 71652 24.33 94692 83 23318 72012 24.46 95330 84 23145 72615 24.17 95760 85 22529 70118 24.32 92647 86 22227 68907 24.39 91134 87 21582 68597 23.93 90179 88 21939 67942 24.41 89881 89 21297 66655 24.21 87952 90 21395 66501 24.34 87896 91 20801 65366 24.14 86167 92 20566 64864 24.07 85430 93 20499 64567 24.10 85066 94 20193 63501 24.13 83694 95 19889 63217 23.93 83106 96 20162 63445 24.12 83607 97 19254 60759 24.06 80013 98 18162 57036 24.15 75198 99 14335 45242 24.06 59577 100 18508 57339 24.40 75847 101 17747 56741 23.83 74488 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 117915 181602 39.37 299517 2 67643 178509 27.48 246152 3 29210 173955 14.38 203165 4 16792 168492 9.06 185284 5 11849 153478 7.17 165327 6 10813 145309 6.93 156122 7 8042 183466 4.20 191508 8 3727 201132 1.82 204859 9 2970 193574 1.51 196544 10 3191 186552 1.68 189743 11 3224 186902 1.70 190126 12 3184 189028 1.66 192212 13 3015 181565 1.63 184580 14 2778 182663 1.50 185441 15 2810 188986 1.47 191796 16 2504 189140 1.31 191644 17 2970 186259 1.57 189229 18 2569 185150 1.37 187719 19 2234 186227 1.19 188461 20 2573 196775 1.29 199348 21 2465 197986 1.23 200451 22 2662 194214 1.35 196876 23 2536 196486 1.27 199022 24 2460 199624 1.22 202084 25 2506 193039 1.28 195545 26 3185 194449 1.61 197634 27 2534 196908 1.27 199442 28 2478 197276 1.24 199754 29 2937 198842 1.46 201779 30 2349 199456 1.16 201805 31 2445 194108 1.24 196553 32 2479 196524 1.25 199003 33 2569 196357 1.29 198926 34 2637 193562 1.34 196199 35 2958 194274 1.50 197232 36 2499 196436 1.26 198935 37 2480 188940 1.30 191420 38 2806 192426 1.44 195232 39 2498 191110 1.29 193608 40 2492 191136 1.29 193628 41 2508 190988 1.30 193496 42 2386 191759 1.23 194145 43 2289 187333 1.21 189622 44 2409 189578 1.25 191987 45 2388 189193 1.25 191581 46 2249 187769 1.18 190018 47 2579 188818 1.35 191397 48 2314 192746 1.19 195060 49 2349 186507 1.24 188856 50 2540 187510 1.34 190050 51 2464 188697 1.29 191161 52 2501 187595 1.32 190096 53 2495 185043 1.33 187538 54 2551 188360 1.34 190911 55 2567 183819 1.38 186386 56 2599 187200 1.37 189799 57 2756 186549 1.46 189305 58 2723 183295 1.46 186018 59 2880 184736 1.54 187616 60 2810 185586 1.49 188396 61 2896 181595 1.57 184491 62 2985 180776 1.62 183761 63 2939 178936 1.62 181875 64 2973 177068 1.65 180041 65 3385 176598 1.88 179983 66 2925 172213 1.67 175138 67 2912 168188 1.70 171100 68 3154 169209 1.83 172363 69 2717 168142 1.59 170859 70 2659 163430 1.60 166089 71 2570 164106 1.54 166676 72 2683 163373 1.62 166056 73 2709 160558 1.66 163267 74 2819 159495 1.74 162314 75 2587 158826 1.60 161413 76 2577 153295 1.65 155872 77 2895 154313 1.84 157208 78 2603 150653 1.70 153256 79 2498 148698 1.65 151196 80 2554 148341 1.69 150895 81 2457 146630 1.65 149087 82 2404 143512 1.65 145916 83 2536 145478 1.71 148014 84 2482 144493 1.69 146975 85 2466 140955 1.72 143421 86 2563 141491 1.78 144054 87 2297 141926 1.59 144223 88 2286 138014 1.63 140300 89 2451 136003 1.77 138454 90 2378 135277 1.73 137655 91 2340 132894 1.73 135234 92 2499 134224 1.83 136723 93 2550 131715 1.90 134265 94 2504 129089 1.90 131593 95 2513 128688 1.92 131201 96 2545 126702 1.97 129247 97 2370 115177 2.02 117547 98 2342 105712 2.17 108054 99 1371 68747 1.96 70118 100 1668 68775 2.37 70443 101 3326 115836 2.79 119162 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 142441 234692 37.77 377133 2 81455 255488 24.17 336943 3 49149 293329 14.35 342478 4 45825 307114 12.98 352939 5 44643 369514 10.78 414157 6 37018 407236 8.33 444254 7 29694 518586 5.42 548280 8 22213 569561 3.75 591774 9 17143 523185 3.17 540328 10 17265 504028 3.31 521293 11 21603 505408 4.10 527011 12 18574 508749 3.52 527323 13 20612 519304 3.82 539916 14 22245 530690 4.02 552935 15 19420 543462 3.45 562882 16 18969 547354 3.35 566323 17 21674 552179 3.78 573853 18 18338 571303 3.11 589641 19 18641 582300 3.10 600941 20 21465 601442 3.45 622907 21 18874 599020 3.05 617894 22 20329 598317 3.29 618646 23 22049 596250 3.57 618299 24 18885 593908 3.08 612793 25 20249 595462 3.29 615711 26 21788 600795 3.50 622583 27 18967 604163 3.04 623130 28 18695 606454 2.99 625149 29 21944 603531 3.51 625475 30 18669 599898 3.02 618567 31 19330 590164 3.17 609494 32 20362 590601 3.33 610963 33 18607 591446 3.05 610053 34 20802 594199 3.38 615001 35 21561 589630 3.53 611191 36 18601 592674 3.04 611275 37 18384 589982 3.02 608366 38 21673 591827 3.53 613500 39 18484 588791 3.04 607275 40 18820 585901 3.11 604721 41 21517 587769 3.53 609286 42 18798 590743 3.08 609541 43 20036 581480 3.33 601516 44 20815 586201 3.43 607016 45 18948 579888 3.16 598836 46 18653 580982 3.11 599635 47 20337 578584 3.40 598921 48 17359 578656 2.91 596015 49 17915 572515 3.03 590430 50 19981 570499 3.38 590480 51 17683 564466 3.04 582149 52 18518 562631 3.19 581149 53 19514 558485 3.38 577999 54 17505 557760 3.04 575265 55 18163 555343 3.17 573506 56 19606 552876 3.42 572482 57 16841 556115 2.94 572956 58 17656 550793 3.11 568449 59 20100 549713 3.53 569813 60 17021 542179 3.04 559200 61 18232 536049 3.29 554281 62 19200 528826 3.50 548026 63 17064 522186 3.16 539250 64 18055 517484 3.37 535539 65 18324 514622 3.44 532946 66 16411 508064 3.13 524475 67 16369 501988 3.16 518357 68 17643 498796 3.42 516439 69 16083 494797 3.15 510880 70 15912 490264 3.14 506176 71 17704 487561 3.50 505265 72 15752 483591 3.15 499343 73 17247 475388 3.50 492635 74 17479 473017 3.56 490496 75 15451 466425 3.21 481876 76 15559 464745 3.24 480304 77 17761 457716 3.74 475477 78 14634 455899 3.11 470533 79 15479 450608 3.32 466087 80 16875 445956 3.65 462831 81 15591 438940 3.43 454531 82 15992 434210 3.55 450202 83 17103 432513 3.80 449616 84 15270 427271 3.45 442541 85 14604 420387 3.36 434991 86 15645 415744 3.63 431389 87 14135 412489 3.31 426624 88 13959 407912 3.31 421871 89 15894 402126 3.80 418020 90 14066 399645 3.40 413711 91 14345 395023 3.50 409368 92 15256 392234 3.74 407490 93 13949 387985 3.47 401934 94 13863 383924 3.49 397787 95 15119 378021 3.85 393140 96 13120 370357 3.42 383477 97 13018 359801 3.49 372819 98 13958 335278 4.00 349236 99 8079 232678 3.36 240757 100 8808 205889 4.10 214697 101 13543 339524 3.84 353067 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 73859 87968 45.64 161827 2 63190 76004 45.40 139194 3 67365 84723 44.29 152088 4 60814 93894 39.31 154708 5 26563 120796 18.03 147359 6 16274 67007 19.54 83281 7 14097 71658 16.44 85755 8 14894 67501 18.08 82395 9 12572 56721 18.14 69293 10 14260 63436 18.35 77696 11 15012 62786 19.30 77798 12 14523 61151 19.19 75674 13 14802 57704 20.41 72506 14 15245 60089 20.24 75334 15 15059 53850 21.85 68909 16 14142 52487 21.22 66629 17 17454 56824 23.50 74278 18 16352 54186 23.18 70538 19 15649 53646 22.58 69295 20 15025 52483 22.26 67508 21 15333 50632 23.24 65965 22 15121 52001 22.53 67122 23 13895 49431 21.94 63326 24 13446 48167 21.82 61613 25 14865 49819 22.98 64684 26 13879 46968 22.81 60847 27 15012 47793 23.90 62805 28 13570 44716 23.28 58286 29 14583 47107 23.64 61690 30 13396 44255 23.24 57651 31 13026 44991 22.45 58017 32 12589 42573 22.82 55162 33 14022 42644 24.74 56666 34 13557 44540 23.34 58097 35 16652 47774 25.85 64426 36 13261 41927 24.03 55188 37 13919 43990 24.04 57909 38 12718 41484 23.46 54202 39 12977 40196 24.41 53173 40 13797 40483 25.42 54280 41 12357 39172 23.98 51529 42 12333 40564 23.32 52897 43 12167 38695 23.92 50862 44 11392 37869 23.13 49261 45 13708 40706 25.19 54414 46 10968 35078 23.82 46046 47 11136 36191 23.53 47327 48 11403 35451 24.34 46854 49 10752 37333 22.36 48085 50 10247 33831 23.25 44078 51 10208 33147 23.55 43355 52 10297 33516 23.50 43813 53 10556 32120 24.74 42676 54 10242 32759 23.82 43001 55 10296 30859 25.02 41155 56 9042 30448 22.90 39490 57 9446 30384 23.72 39830 58 9237 30578 23.20 39815 59 8661 28157 23.52 36818 60 8977 28280 24.09 37257 61 7931 27934 22.11 35865 62 7993 26149 23.41 34142 63 8531 25999 24.71 34530 64 8011 26696 23.08 34707 65 8186 24798 24.82 32984 66 8485 25727 24.80 34212 67 7728 26759 22.41 34487 68 8601 27143 24.06 35744 69 7706 25674 23.09 33380 70 7395 24631 23.09 32026 71 7573 22701 25.01 30274 72 7438 22166 25.12 29604 73 7025 22920 23.46 29945 74 6586 22425 22.70 29011 75 6811 22684 23.09 29495 76 6868 21571 24.15 28439 77 6644 22251 22.99 28895 78 6673 21829 23.41 28502 79 6521 20588 24.05 27109 80 6248 20428 23.42 26676 81 6346 20958 23.24 27304 82 6458 20753 23.73 27211 83 6387 19415 24.75 25802 84 6948 21368 24.54 28316 85 6031 20079 23.10 26110 86 6004 19488 23.55 25492 87 5910 19693 23.08 25603 88 5842 19093 23.43 24935 89 6210 19210 24.43 25420 90 6152 19033 24.43 25185 91 5633 18309 23.53 23942 92 5604 18421 23.33 24025 93 5579 18095 23.57 23674 94 5865 18150 24.42 24015 95 5536 17653 23.87 23189 96 5363 17694 23.26 23057 97 5891 18457 24.20 24348 98 5378 16821 24.23 22199 99 4718 0 100.00 4718 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 22879 105086 17.88 127965 2 21824 103294 17.44 125118 3 20368 108021 15.86 128389 4 22167 114944 16.17 137111 5 3039 210856 1.42 213895 6 2174 256242 0.84 258416 7 1391 145865 0.94 147256 8 1323 156757 0.84 158080 9 1270 128120 0.98 129390 10 1318 122515 1.06 123833 11 1954 170548 1.13 172502 12 1331 131676 1.00 133007 13 1340 129978 1.02 131318 14 1321 125908 1.04 127229 15 1358 122710 1.09 124068 16 1280 113460 1.12 114740 17 1471 122343 1.19 123814 18 1619 106497 1.50 108116 19 1551 106890 1.43 108441 20 1714 105374 1.60 107088 21 1937 99595 1.91 101532 22 1687 112013 1.48 113700 23 1586 108376 1.44 109962 24 1334 96791 1.36 98125 25 1442 99092 1.43 100534 26 1596 104441 1.51 106037 27 1540 96828 1.57 98368 28 1445 92338 1.54 93783 29 1597 100451 1.56 102048 30 1595 94211 1.66 95806 31 1442 90756 1.56 92198 32 1428 91030 1.54 92458 33 1711 109172 1.54 110883 34 1424 89846 1.56 91270 35 1559 92179 1.66 93738 36 1483 90649 1.61 92132 37 1367 83643 1.61 85010 38 1634 89883 1.79 91517 39 1484 84561 1.72 86045 40 1478 81055 1.79 82533 41 1483 78096 1.86 79579 42 1595 73005 2.14 74600 43 1800 76821 2.29 78621 44 1455 75467 1.89 76922 45 1351 68237 1.94 69588 46 1350 68368 1.94 69718 47 1471 70588 2.04 72059 48 1383 66697 2.03 68080 49 1414 70302 1.97 71716 50 1470 67880 2.12 69350 51 1360 62769 2.12 64129 52 1324 61632 2.10 62956 53 1640 68078 2.35 69718 54 1200 61503 1.91 62703 55 1264 62618 1.98 63882 56 1111 60213 1.81 61324 57 1330 58600 2.22 59930 58 1114 59700 1.83 60814 59 973 58248 1.64 59221 60 820 55563 1.45 56383 61 743 55434 1.32 56177 62 689 58028 1.17 58717 63 706 58249 1.20 58955 64 587 51030 1.14 51617 65 704 55967 1.24 56671 66 608 50167 1.20 50775 67 611 54909 1.10 55520 68 598 54140 1.09 54738 69 672 51003 1.30 51675 70 611 51256 1.18 51867 71 547 52699 1.03 53246 72 551 47831 1.14 48382 73 546 48224 1.12 48770 74 526 49266 1.06 49792 75 537 46613 1.14 47150 76 522 46102 1.12 46624 77 549 48350 1.12 48899 78 572 46495 1.22 47067 79 530 45911 1.14 46441 80 549 44055 1.23 44604 81 575 43042 1.32 43617 82 509 41854 1.20 42363 83 557 43088 1.28 43645 84 517 40964 1.25 41481 85 561 46265 1.20 46826 86 510 41435 1.22 41945 87 503 41359 1.20 41862 88 508 39034 1.28 39542 89 527 41884 1.24 42411 90 464 40956 1.12 41420 91 490 41900 1.16 42390 92 515 40071 1.27 40586 93 448 38308 1.16 38756 94 451 37831 1.18 38282 95 491 37903 1.28 38394 96 522 36409 1.41 36931 97 477 36196 1.30 36673 98 393 36044 1.08 36437 99 378 0 100.00 378 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 38226 139607 21.50 177833 2 32580 113253 22.34 145833 3 33223 115581 22.33 148804 4 33489 112123 23.00 145612 5 11507 228450 4.80 239957 6 11468 313265 3.53 324733 7 11787 417668 2.74 429455 8 10681 411754 2.53 422435 9 12442 386051 3.12 398493 10 11155 396507 2.74 407662 11 10979 390977 2.73 401956 12 10433 364710 2.78 375143 13 10095 377957 2.60 388052 14 10690 381105 2.73 391795 15 10403 391028 2.59 401431 16 9231 373875 2.41 383106 17 10480 376993 2.70 387473 18 9923 373076 2.59 382999 19 8961 343930 2.54 352891 20 10831 365708 2.88 376539 21 10216 338361 2.93 348577 22 10160 329371 2.99 339531 23 10149 321741 3.06 331890 24 9274 307006 2.93 316280 25 10140 305657 3.21 315797 26 9535 301592 3.06 311127 27 10150 323101 3.05 333251 28 9461 309556 2.97 319017 29 9633 304250 3.07 313883 30 9996 289585 3.34 299581 31 9483 279711 3.28 289194 32 9212 270710 3.29 279922 33 9778 266523 3.54 276301 34 9138 268149 3.30 277287 35 9838 274441 3.46 284279 36 8884 273201 3.15 282085 37 8822 265391 3.22 274213 38 9564 277525 3.33 287089 39 9234 253486 3.51 262720 40 8864 263540 3.25 272404 41 9066 248453 3.52 257519 42 9065 253065 3.46 262130 43 8972 236909 3.65 245881 44 8196 236607 3.35 244803 45 8568 234552 3.52 243120 46 8101 234698 3.34 242799 47 7853 230144 3.30 237997 48 7981 223077 3.45 231058 49 7605 224784 3.27 232389 50 7556 220806 3.31 228362 51 7741 213008 3.51 220749 52 7058 201344 3.39 208402 53 7165 202629 3.42 209794 54 6791 196730 3.34 203521 55 6483 202454 3.10 208937 56 6672 196876 3.28 203548 57 6490 199274 3.15 205764 58 5907 192013 2.98 197920 59 6288 184511 3.30 190799 60 5688 188364 2.93 194052 61 5934 179093 3.21 185027 62 5585 177658 3.05 183243 63 5340 177908 2.91 183248 64 5543 172813 3.11 178356 65 5229 175950 2.89 181179 66 5400 169415 3.09 174815 67 5025 169404 2.88 174429 68 5183 175034 2.88 180217 69 5276 169777 3.01 175053 70 5045 165007 2.97 170052 71 4909 160757 2.96 165666 72 5094 160949 3.07 166043 73 4885 157604 3.01 162489 74 4672 157836 2.87 162508 75 4878 157376 3.01 162254 76 4385 151789 2.81 156174 77 4978 150934 3.19 155912 78 4817 152054 3.07 156871 79 4731 154590 2.97 159321 80 4700 149577 3.05 154277 81 4772 149044 3.10 153816 82 4557 146255 3.02 150812 83 4340 145728 2.89 150068 84 4541 145565 3.03 150106 85 4287 141929 2.93 146216 86 4353 142094 2.97 146447 87 4267 139560 2.97 143827 88 4113 134727 2.96 138840 89 4176 134258 3.02 138434 90 4116 135670 2.94 139786 91 3940 133099 2.88 137039 92 3810 132638 2.79 136448 93 3906 129800 2.92 133706 94 3715 128707 2.81 132422 95 3776 126128 2.91 129904 96 3703 124461 2.89 128164 97 3398 124570 2.66 127968 98 3351 119300 2.73 122651 99 2418 0 100.00 2418