Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-205_S26_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-205_S26_L004_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 16541499
Paired-end alignments with a unique best hit 8128641
Pairs without alignments under any condition 5658467
Pairs that did not map uniquely 2754391
Genomic sequence context not extractable (edges of chromosomes) 43304

Cytosine Methylation

Total C's analysed 241111243
Methylated C's in CpG context 8197764
Methylated C's in CHG context 1302620
Methylated C's in CHH context 4769951
Methylated C's in Unknown context 161827
Unmethylated C's in CpG context 30061913
Unmethylated C's in CHG context 52135921
Unmethylated C's in CHH context 144643074
Unmethylated C's in Unknown context 1194910
Percentage methylation (CpG context) 21.4%
Percentage methylation (CHG context) 2.4%
Percentage methylation (CHH context) 3.2%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 3988481 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 4096856 original bottom strand