EPI-200_S25_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 9514204 lines in total Total number of methylation call strings processed: 19028408 Final Cytosine Methylation Report ================================= Total number of C's analysed: 198582575 Total methylated C's in CpG context: 7805045 Total methylated C's in CHG context: 1222811 Total methylated C's in CHH context: 6058079 Total C to T conversions in CpG context: 19110541 Total C to T conversions in CHG context: 41405150 Total C to T conversions in CHH context: 122980949 C methylated in CpG context: 29.0% C methylated in CHG context: 2.9% C methylated in CHH context: 4.7%