CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 140125 232331 37.62 372456 2 134139 256529 34.34 390668 3 129271 226567 36.33 355838 4 134719 182296 42.50 317015 5 133135 155147 46.18 288282 6 133207 132309 50.17 265516 7 150312 134590 52.76 284902 8 73272 146964 33.27 220236 9 65810 136974 32.45 202784 10 65628 134076 32.86 199704 11 68753 137506 33.33 206259 12 67016 140094 32.36 207110 13 65999 143883 31.45 209882 14 62901 143566 30.47 206467 15 61757 145403 29.81 207160 16 58573 143859 28.93 202432 17 55270 140921 28.17 196191 18 57399 143302 28.60 200701 19 56111 144430 27.98 200541 20 56417 146233 27.84 202650 21 56240 146789 27.70 203029 22 55597 145337 27.67 200934 23 54827 144157 27.55 198984 24 54468 144628 27.36 199096 25 53722 143724 27.21 197446 26 54443 142377 27.66 196820 27 53685 145220 26.99 198905 28 54738 144759 27.44 199497 29 53385 147081 26.63 200466 30 52228 146124 26.33 198352 31 53648 144024 27.14 197672 32 52858 140800 27.29 193658 33 53118 142244 27.19 195362 34 53435 141047 27.48 194482 35 53524 141539 27.44 195063 36 53326 143870 27.04 197196 37 51169 140504 26.70 191673 38 50643 140959 26.43 191602 39 52764 141159 27.21 193923 40 52030 140059 27.09 192089 41 51985 139519 27.15 191504 42 52717 141697 27.12 194414 43 51917 140345 27.00 192262 44 51178 139069 26.90 190247 45 51929 139132 27.18 191061 46 52202 140501 27.09 192703 47 51831 137766 27.34 189597 48 51448 138181 27.13 189629 49 53226 138966 27.69 192192 50 51021 139434 26.79 190455 51 51375 138915 27.00 190290 52 51539 143643 26.41 195182 53 50577 137392 26.91 187969 54 49956 137162 26.70 187118 55 49904 133789 27.17 183693 56 49687 133429 27.13 183116 57 50783 135242 27.30 186025 58 51405 135092 27.56 186497 59 52541 133822 28.19 186363 60 51542 135022 27.63 186564 61 51648 132587 28.03 184235 62 50386 133525 27.40 183911 63 49824 131564 27.47 181388 64 49437 129827 27.58 179264 65 49487 128365 27.82 177852 66 50099 128591 28.04 178690 67 49609 125446 28.34 175055 68 48594 125085 27.98 173679 69 47314 124283 27.57 171597 70 46941 123181 27.59 170122 71 46133 120692 27.65 166825 72 45333 120402 27.35 165735 73 45130 118233 27.63 163363 74 44636 117726 27.49 162362 75 43638 116907 27.18 160545 76 43544 115050 27.46 158594 77 43533 113758 27.68 157291 78 43622 113850 27.70 157472 79 42095 111110 27.48 153205 80 41695 111920 27.14 153615 81 41126 109745 27.26 150871 82 40049 109013 26.87 149062 83 40567 109350 27.06 149917 84 40072 109134 26.86 149206 85 39577 107008 27.00 146585 86 38576 104923 26.88 143499 87 37659 103303 26.72 140962 88 37697 102025 26.98 139722 89 37452 101504 26.95 138956 90 36927 102175 26.55 139102 91 36425 99726 26.75 136151 92 35788 99350 26.48 135138 93 35795 98525 26.65 134320 94 35149 97491 26.50 132640 95 34784 96477 26.50 131261 96 34996 97844 26.34 132840 97 33407 94048 26.21 127455 98 31734 87971 26.51 119705 99 24957 69527 26.41 94484 100 32285 88145 26.81 120430 101 29989 87603 25.50 117592 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 195667 307509 38.89 503176 2 114990 295170 28.04 410160 3 54606 284668 16.09 339274 4 30437 282319 9.73 312756 5 20113 257899 7.23 278012 6 20299 252403 7.44 272702 7 12959 303592 4.09 316551 8 6543 325606 1.97 332149 9 5356 311888 1.69 317244 10 5227 303882 1.69 309109 11 5974 305353 1.92 311327 12 5592 309324 1.78 314916 13 5335 298578 1.76 303913 14 5168 298862 1.70 304030 15 5408 306756 1.73 312164 16 4568 306528 1.47 311096 17 5421 302448 1.76 307869 18 4621 302720 1.50 307341 19 4168 301876 1.36 306044 20 4632 316702 1.44 321334 21 4436 320054 1.37 324490 22 4783 314090 1.50 318873 23 4727 319832 1.46 324559 24 4442 323642 1.35 328084 25 4782 312515 1.51 317297 26 6132 315984 1.90 322116 27 4384 319382 1.35 323766 28 4286 319372 1.32 323658 29 5368 322342 1.64 327710 30 4259 323131 1.30 327390 31 4140 315981 1.29 320121 32 4520 318908 1.40 323428 33 4399 319997 1.36 324396 34 4471 315851 1.40 320322 35 5349 317134 1.66 322483 36 4543 318620 1.41 323163 37 4347 309566 1.38 313913 38 5200 314328 1.63 319528 39 4289 312489 1.35 316778 40 4252 312399 1.34 316651 41 4352 310974 1.38 315326 42 4128 313184 1.30 317312 43 4143 307836 1.33 311979 44 4246 312556 1.34 316802 45 4272 310571 1.36 314843 46 4340 307887 1.39 312227 47 4525 308457 1.45 312982 48 4004 315479 1.25 319483 49 4428 306139 1.43 310567 50 4528 306534 1.46 311062 51 4376 310908 1.39 315284 52 4425 310360 1.41 314785 53 4413 304765 1.43 309178 54 4830 310713 1.53 315543 55 4563 305475 1.47 310038 56 4790 306488 1.54 311278 57 4801 306562 1.54 311363 58 4847 303041 1.57 307888 59 5090 304146 1.65 309236 60 4991 306705 1.60 311696 61 5005 299705 1.64 304710 62 5399 299099 1.77 304498 63 5222 297275 1.73 302497 64 5306 295359 1.76 300665 65 6432 291965 2.16 298397 66 5155 288089 1.76 293244 67 5222 279937 1.83 285159 68 5700 281361 1.99 287061 69 4751 279909 1.67 284660 70 4559 272462 1.65 277021 71 4777 272038 1.73 276815 72 4757 272566 1.72 277323 73 4612 266668 1.70 271280 74 5331 264758 1.97 270089 75 4465 264877 1.66 269342 76 4827 254747 1.86 259574 77 5301 257025 2.02 262326 78 4373 252696 1.70 257069 79 4612 247114 1.83 251726 80 4420 247182 1.76 251602 81 4396 244280 1.77 248676 82 4108 240030 1.68 244138 83 4726 243307 1.91 248033 84 4576 240888 1.86 245464 85 4308 237046 1.78 241354 86 4580 237508 1.89 242088 87 4691 237197 1.94 241888 88 5096 226175 2.20 231271 89 4406 229279 1.89 233685 90 4195 229346 1.80 233541 91 4251 223361 1.87 227612 92 4600 224023 2.01 228623 93 4606 221692 2.04 226298 94 4385 218288 1.97 222673 95 4509 215696 2.05 220205 96 4474 214157 2.05 218631 97 4451 194324 2.24 198775 98 4235 179745 2.30 183980 99 2368 114909 2.02 117277 100 3077 116296 2.58 119373 101 5873 193518 2.95 199391 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 253693 439782 36.58 693475 2 153688 468644 24.70 622332 3 95169 521565 15.43 616734 4 87398 550073 13.71 637471 5 84642 635096 11.76 719738 6 70182 686017 9.28 756199 7 53111 846135 5.91 899246 8 46036 910493 4.81 956529 9 34647 845281 3.94 879928 10 35208 827871 4.08 863079 11 45949 829683 5.25 875632 12 38084 839034 4.34 877118 13 43153 854795 4.81 897948 14 48160 875370 5.21 923530 15 40159 893993 4.30 934152 16 39570 904900 4.19 944470 17 46733 909207 4.89 955940 18 38106 939933 3.90 978039 19 38440 951588 3.88 990028 20 46124 983253 4.48 1029377 21 39339 984859 3.84 1024198 22 43045 986643 4.18 1029688 23 46541 985422 4.51 1031963 24 39239 983009 3.84 1022248 25 43899 985384 4.27 1029283 26 46939 994515 4.51 1041454 27 39789 1001792 3.82 1041581 28 39544 1005733 3.78 1045277 29 45832 1003039 4.37 1048871 30 39156 993532 3.79 1032688 31 40395 980773 3.96 1021168 32 44449 983577 4.32 1028026 33 39031 984535 3.81 1023566 34 44490 990122 4.30 1034612 35 46561 982075 4.53 1028636 36 39755 989409 3.86 1029164 37 38396 981649 3.76 1020045 38 46519 987426 4.50 1033945 39 38726 981440 3.80 1020166 40 39261 978801 3.86 1018062 41 46073 981649 4.48 1027722 42 40566 989017 3.94 1029583 43 43588 977912 4.27 1021500 44 44543 983549 4.33 1028092 45 41000 973422 4.04 1014422 46 39696 974326 3.91 1014022 47 43977 971333 4.33 1015310 48 36762 972952 3.64 1009714 49 37855 960252 3.79 998107 50 42941 956296 4.30 999237 51 36595 948037 3.72 984632 52 39817 944009 4.05 983826 53 43153 937351 4.40 980504 54 37388 937279 3.84 974667 55 38278 932096 3.94 970374 56 43080 928603 4.43 971683 57 36263 934833 3.73 971096 58 37237 927759 3.86 964996 59 43037 927978 4.43 971015 60 35545 911638 3.75 947183 61 38943 901701 4.14 940644 62 41235 892571 4.42 933806 63 35696 883595 3.88 919291 64 37982 875811 4.16 913793 65 39519 865613 4.37 905132 66 34468 858038 3.86 892506 67 34321 849738 3.88 884059 68 38452 842970 4.36 881422 69 33838 836706 3.89 870544 70 34144 829819 3.95 863963 71 38201 825164 4.42 863365 72 33472 821347 3.92 854819 73 36735 804822 4.37 841557 74 38018 801135 4.53 839153 75 33158 793284 4.01 826442 76 33620 782635 4.12 816255 77 38032 777260 4.66 815292 78 30942 772699 3.85 803641 79 32774 761921 4.12 794695 80 36721 758868 4.62 795589 81 32637 747454 4.18 780091 82 34379 739563 4.44 773942 83 36602 737710 4.73 774312 84 33146 726829 4.36 759975 85 31046 717347 4.15 748393 86 34590 709795 4.65 744385 87 30759 699790 4.21 730549 88 31583 683362 4.42 714945 89 34152 689077 4.72 723229 90 29388 687266 4.10 716654 91 30479 675448 4.32 705927 92 32706 672045 4.64 704751 93 29127 667898 4.18 697025 94 29005 658607 4.22 687612 95 32487 648700 4.77 681187 96 27342 638084 4.11 665426 97 27222 619896 4.21 647118 98 29942 576825 4.93 606767 99 16829 402598 4.01 419427 100 18688 355586 4.99 374274 101 28182 581378 4.62 609560 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 125473 135355 48.11 260828 2 108484 115874 48.35 224358 3 114452 129123 46.99 243575 4 103531 142408 42.10 245939 5 45558 178883 20.30 224441 6 28855 100037 22.39 128892 7 24500 108363 18.44 132863 8 26145 100482 20.65 126627 9 22803 85602 21.04 108405 10 24497 95441 20.42 119938 11 25860 94869 21.42 120729 12 25149 91997 21.47 117146 13 25807 87364 22.80 113171 14 26670 89820 22.89 116490 15 25857 81816 24.01 107673 16 24389 78832 23.63 103221 17 30344 86363 26.00 116707 18 28227 81876 25.64 110103 19 27839 80355 25.73 108194 20 25444 78953 24.37 104397 21 26063 76298 25.46 102361 22 26810 79776 25.15 106586 23 24958 75353 24.88 100311 24 23579 72228 24.61 95807 25 26053 75332 25.70 101385 26 24194 71611 25.25 95805 27 26135 73523 26.22 99658 28 23692 68809 25.61 92501 29 24927 71907 25.74 96834 30 23612 66089 26.32 89701 31 22758 68597 24.91 91355 32 22138 64881 25.44 87019 33 24613 65217 27.40 89830 34 23730 68191 25.82 91921 35 29079 73180 28.44 102259 36 23733 64419 26.92 88152 37 24508 67673 26.59 92181 38 22124 63068 25.97 85192 39 22824 61841 26.96 84665 40 24726 61487 28.68 86213 41 21459 60319 26.24 81778 42 22182 62695 26.13 84877 43 21773 60763 26.38 82536 44 20463 58093 26.05 78556 45 24958 63571 28.19 88529 46 19931 54775 26.68 74706 47 20229 55673 26.65 75902 48 20383 54399 27.26 74782 49 19408 57416 25.26 76824 50 18350 51747 26.18 70097 51 18343 50513 26.64 68856 52 18829 52342 26.46 71171 53 19018 50970 27.17 69988 54 18689 49831 27.28 68520 55 18198 48158 27.42 66356 56 16863 48070 25.97 64933 57 17481 47411 26.94 64892 58 17050 47289 26.50 64339 59 15877 44356 26.36 60233 60 16369 44332 26.97 60701 61 14762 43425 25.37 58187 62 14965 41981 26.28 56946 63 15814 41389 27.65 57203 64 15079 41724 26.55 56803 65 14912 39493 27.41 54405 66 15389 41136 27.23 56525 67 14284 41526 25.59 55810 68 15693 42854 26.80 58547 69 14202 39901 26.25 54103 70 13714 39269 25.88 52983 71 14510 36378 28.51 50888 72 13422 35462 27.46 48884 73 13333 36551 26.73 49884 74 12114 36034 25.16 48148 75 12667 35750 26.16 48417 76 12748 34773 26.83 47521 77 12311 34430 26.34 46741 78 12421 34588 26.42 47009 79 11667 33113 26.05 44780 80 11630 32469 26.37 44099 81 11613 33150 25.94 44763 82 11629 33068 26.02 44697 83 11864 31564 27.32 43428 84 12940 33494 27.87 46434 85 11134 31380 26.19 42514 86 10849 31147 25.83 41996 87 11034 30729 26.42 41763 88 11023 30237 26.72 41260 89 11439 30549 27.24 41988 90 11266 30192 27.17 41458 91 10604 29640 26.35 40244 92 10104 29295 25.65 39399 93 10396 29036 26.36 39432 94 10689 28893 27.00 39582 95 10611 28336 27.24 38947 96 10282 27573 27.16 37855 97 11164 28762 27.96 39926 98 9747 26746 26.71 36493 99 8893 0 100.00 8893 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 37835 174006 17.86 211841 2 36264 171862 17.42 208126 3 34272 177830 16.16 212102 4 35902 191800 15.77 227702 5 5338 344511 1.53 349849 6 3900 417923 0.92 421823 7 2537 240829 1.04 243366 8 2433 256926 0.94 259359 9 2389 211300 1.12 213689 10 2412 203402 1.17 205814 11 3390 280417 1.19 283807 12 2452 216142 1.12 218594 13 2404 214498 1.11 216902 14 2520 206388 1.21 208908 15 2480 201157 1.22 203637 16 2298 186512 1.22 188810 17 2499 203106 1.22 205605 18 3039 175605 1.70 178644 19 2437 177140 1.36 179577 20 2676 174463 1.51 177139 21 3307 165451 1.96 168758 22 2666 184835 1.42 187501 23 2687 181795 1.46 184482 24 2314 159455 1.43 161769 25 2523 164658 1.51 167181 26 2659 173192 1.51 175851 27 2541 160648 1.56 163189 28 2442 155050 1.55 157492 29 2797 167033 1.65 169830 30 2770 157536 1.73 160306 31 2391 151776 1.55 154167 32 2472 155497 1.56 157969 33 2788 182057 1.51 184845 34 2510 149619 1.65 152129 35 2565 155219 1.63 157784 36 2605 152660 1.68 155265 37 2404 141617 1.67 144021 38 2596 152475 1.67 155071 39 2590 141909 1.79 144499 40 2519 137618 1.80 140137 41 2810 134036 2.05 136846 42 2674 124039 2.11 126713 43 2938 132381 2.17 135319 44 2361 128791 1.80 131152 45 2398 116938 2.01 119336 46 2314 118051 1.92 120365 47 2552 122040 2.05 124592 48 2362 114095 2.03 116457 49 2386 119777 1.95 122163 50 2689 115394 2.28 118083 51 2287 107628 2.08 109915 52 2382 106350 2.19 108732 53 2908 118488 2.40 121396 54 2363 106997 2.16 109360 55 2285 108498 2.06 110783 56 2084 106029 1.93 108113 57 2448 101500 2.36 103948 58 2000 100938 1.94 102938 59 1745 102605 1.67 104350 60 1672 96040 1.71 97712 61 1404 96973 1.43 98377 62 1384 100488 1.36 101872 63 1281 101690 1.24 102971 64 1108 90551 1.21 91659 65 1371 97438 1.39 98809 66 1199 87251 1.36 88450 67 1226 96543 1.25 97769 68 1212 94351 1.27 95563 69 1190 90151 1.30 91341 70 1115 89619 1.23 90734 71 1135 92348 1.21 93483 72 1084 84341 1.27 85425 73 1076 84301 1.26 85377 74 1070 86657 1.22 87727 75 1014 82522 1.21 83536 76 981 80678 1.20 81659 77 1103 86666 1.26 87769 78 997 81352 1.21 82349 79 1020 80738 1.25 81758 80 967 77804 1.23 78771 81 988 75401 1.29 76389 82 1014 74112 1.35 75126 83 955 75805 1.24 76760 84 974 72138 1.33 73112 85 1032 80405 1.27 81437 86 1018 72736 1.38 73754 87 960 71744 1.32 72704 88 945 68937 1.35 69882 89 1040 73868 1.39 74908 90 1065 71313 1.47 72378 91 969 73539 1.30 74508 92 993 69915 1.40 70908 93 931 67312 1.36 68243 94 929 66508 1.38 67437 95 945 67473 1.38 68418 96 1063 64243 1.63 65306 97 901 63896 1.39 64797 98 759 62434 1.20 63193 99 690 0 100.00 690 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 68161 228890 22.95 297051 2 59814 185744 24.36 245558 3 61772 189207 24.61 250979 4 63033 186425 25.27 249458 5 24264 376038 6.06 400302 6 24106 520016 4.43 544122 7 25168 694835 3.50 720003 8 22720 688648 3.19 711368 9 26379 642954 3.94 669333 10 23898 657853 3.51 681751 11 23368 652340 3.46 675708 12 22207 609405 3.52 631612 13 21538 632653 3.29 654191 14 22590 636565 3.43 659155 15 21808 654898 3.22 676706 16 20350 625960 3.15 646310 17 21904 629699 3.36 651603 18 20592 624097 3.19 644689 19 19122 576543 3.21 595665 20 22248 611515 3.51 633763 21 21031 568341 3.57 589372 22 21801 556160 3.77 577961 23 21147 545037 3.74 566184 24 19525 518804 3.63 538329 25 21408 516879 3.98 538287 26 20019 513292 3.75 533311 27 20775 544022 3.68 564797 28 19837 519079 3.68 538916 29 20359 513835 3.81 534194 30 21116 492535 4.11 513651 31 20038 478418 4.02 498456 32 19279 463518 3.99 482797 33 20610 458612 4.30 479222 34 19604 459916 4.09 479520 35 20367 471368 4.14 491735 36 18829 467380 3.87 486209 37 18337 456675 3.86 475012 38 19948 477395 4.01 497343 39 19305 438332 4.22 457637 40 18745 454741 3.96 473486 41 19186 429294 4.28 448480 42 18749 436218 4.12 454967 43 18601 411138 4.33 429739 44 17227 410369 4.03 427596 45 17780 408152 4.17 425932 46 17232 410500 4.03 427732 47 16546 401978 3.95 418524 48 16879 391243 4.14 408122 49 16220 394775 3.95 410995 50 16257 385724 4.04 401981 51 16237 376258 4.14 392495 52 15240 353375 4.13 368615 53 15067 354893 4.07 369960 54 14216 345782 3.95 359998 55 14237 356792 3.84 371029 56 14164 345899 3.93 360063 57 13907 352379 3.80 366286 58 13005 338715 3.70 351720 59 13391 326720 3.94 340111 60 12766 333211 3.69 345977 61 12817 318250 3.87 331067 62 12347 313492 3.79 325839 63 11838 316509 3.61 328347 64 12172 305695 3.83 317867 65 11461 310878 3.56 322339 66 11511 299570 3.70 311081 67 11059 299934 3.56 310993 68 11071 309715 3.45 320786 69 11572 301530 3.70 313102 70 11045 291381 3.65 302426 71 10819 285736 3.65 296555 72 11382 284587 3.85 295969 73 10970 280398 3.76 291368 74 10347 280416 3.56 290763 75 10652 280123 3.66 290775 76 9887 270579 3.53 280466 77 11017 268389 3.94 279406 78 10431 271488 3.70 281919 79 10172 275902 3.56 286074 80 10392 265492 3.77 275884 81 10434 265154 3.79 275588 82 10211 260606 3.77 270817 83 9588 259844 3.56 269432 84 9928 258512 3.70 268440 85 9241 252142 3.54 261383 86 9172 252654 3.50 261826 87 9265 248408 3.60 257673 88 8835 241428 3.53 250263 89 9164 239411 3.69 248575 90 9017 241422 3.60 250439 91 8718 238464 3.53 247182 92 8474 235006 3.48 243480 93 8420 231605 3.51 240025 94 7897 227692 3.35 235589 95 8287 225008 3.55 233295 96 7957 221586 3.47 229543 97 7389 221442 3.23 228831 98 7081 210768 3.25 217849 99 4896 0 100.00 4896