Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-200_S25_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-200_S25_L003_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 25100695
Paired-end alignments with a unique best hit 13544663
Pairs without alignments under any condition 7236216
Pairs that did not map uniquely 4319816
Genomic sequence context not extractable (edges of chromosomes) 73709

Cytosine Methylation

Total C's analysed 401767898
Methylated C's in CpG context 14359626
Methylated C's in CHG context 2273954
Methylated C's in CHH context 9938972
Methylated C's in Unknown context 329234
Unmethylated C's in CpG context 42441422
Unmethylated C's in CHG context 86420015
Unmethylated C's in CHH context 246333909
Unmethylated C's in Unknown context 1994222
Percentage methylation (CpG context) 25.3%
Percentage methylation (CHG context) 2.6%
Percentage methylation (CHH context) 3.9%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 6696357 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 6774597 original bottom strand