EPI-199_S24_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 5826074 lines in total Total number of methylation call strings processed: 11652148 Final Cytosine Methylation Report ================================= Total number of C's analysed: 126873753 Total methylated C's in CpG context: 5001166 Total methylated C's in CHG context: 837366 Total methylated C's in CHH context: 6015853 Total C to T conversions in CpG context: 12308526 Total C to T conversions in CHG context: 25946432 Total C to T conversions in CHH context: 76764410 C methylated in CpG context: 28.9% C methylated in CHG context: 3.1% C methylated in CHH context: 7.3%