CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 89988 118249 43.21 208237 2 85401 129940 39.66 215341 3 85521 119796 41.65 205317 4 88715 106025 45.56 194740 5 87936 93690 48.42 181626 6 85588 79260 51.92 164848 7 96129 80375 54.46 176504 8 45718 90158 33.65 135876 9 40413 84626 32.32 125039 10 40358 84362 32.36 124720 11 42596 87195 32.82 129791 12 41389 86572 32.35 127961 13 40798 86880 31.95 127678 14 39134 89839 30.34 128973 15 38574 90147 29.97 128721 16 35582 89839 28.37 125421 17 34771 87576 28.42 122347 18 36411 90384 28.72 126795 19 34710 89002 28.06 123712 20 34934 90767 27.79 125701 21 35048 91726 27.65 126774 22 34468 90175 27.65 124643 23 34418 89533 27.77 123951 24 33928 90173 27.34 124101 25 33697 88987 27.47 122684 26 34016 89269 27.59 123285 27 33821 90839 27.13 124660 28 34608 91099 27.53 125707 29 33745 91046 27.04 124791 30 32801 91577 26.37 124378 31 33703 89711 27.31 123414 32 32835 88643 27.03 121478 33 33455 89998 27.10 123453 34 34018 89654 27.51 123672 35 33556 89766 27.21 123322 36 33080 91367 26.58 124447 37 32226 88684 26.65 120910 38 31676 88619 26.33 120295 39 32690 89454 26.76 122144 40 32690 88305 27.02 120995 41 32632 88315 26.98 120947 42 32634 89997 26.61 122631 43 32655 88864 26.87 121519 44 32040 88302 26.62 120342 45 32594 88935 26.82 121529 46 32780 89023 26.91 121803 47 32017 87042 26.89 119059 48 32033 87880 26.71 119913 49 33678 87309 27.84 120987 50 31923 87437 26.75 119360 51 32196 87891 26.81 120087 52 32517 90381 26.46 122898 53 31514 86003 26.82 117517 54 31301 86618 26.54 117919 55 31635 85614 26.98 117249 56 31342 84996 26.94 116338 57 31656 85037 27.13 116693 58 32462 85617 27.49 118079 59 33094 85298 27.95 118392 60 32530 85414 27.58 117944 61 32479 84256 27.82 116735 62 31640 84024 27.36 115664 63 31053 83923 27.01 114976 64 31232 82909 27.36 114141 65 31186 81980 27.56 113166 66 31457 82700 27.56 114157 67 31185 80386 27.95 111571 68 30403 80076 27.52 110479 69 29819 79764 27.21 109583 70 29796 79205 27.34 109001 71 29131 77005 27.45 106136 72 28475 77472 26.88 105947 73 28446 76399 27.13 104845 74 28331 76255 27.09 104586 75 27193 76090 26.33 103283 76 27266 75404 26.56 102670 77 27755 74456 27.15 102211 78 27580 74662 26.98 102242 79 27323 72657 27.33 99980 80 26353 72831 26.57 99184 81 26076 72071 26.57 98147 82 25196 71684 26.01 96880 83 25694 71476 26.44 97170 84 25883 71818 26.49 97701 85 25509 70636 26.53 96145 86 24757 68919 26.43 93676 87 24060 68958 25.87 93018 88 24234 67036 26.55 91270 89 23918 67400 26.19 91318 90 23561 67589 25.85 91150 91 23273 66491 25.93 89764 92 22841 66250 25.64 89091 93 22990 65880 25.87 88870 94 22782 65090 25.93 87872 95 22249 64313 25.70 86562 96 22052 63975 25.63 86027 97 21661 61861 25.93 83522 98 20416 58419 25.90 78835 99 15916 46445 25.52 62361 100 20694 58131 26.25 78825 101 19153 58204 24.76 77357 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 110367 176996 38.41 287363 2 66345 169767 28.10 236112 3 33580 164573 16.95 198153 4 22167 167937 11.66 190104 5 14848 151162 8.94 166010 6 13856 145840 8.68 159696 7 8593 180314 4.55 188907 8 4853 193956 2.44 198809 9 3776 188349 1.97 192125 10 3893 182602 2.09 186495 11 4433 184308 2.35 188741 12 4204 185032 2.22 189236 13 3879 180198 2.11 184077 14 3856 182568 2.07 186424 15 3870 187167 2.03 191037 16 3457 186290 1.82 189747 17 4462 183239 2.38 187701 18 3523 184047 1.88 187570 19 3173 183157 1.70 186330 20 3506 194221 1.77 197727 21 3330 194821 1.68 198151 22 3717 190804 1.91 194521 23 3699 193779 1.87 197478 24 3522 198212 1.75 201734 25 3749 190220 1.93 193969 26 5364 193734 2.69 199098 27 3207 196595 1.61 199802 28 3368 195921 1.69 199289 29 4554 197622 2.25 202176 30 3233 197621 1.61 200854 31 3131 192768 1.60 195899 32 3389 194960 1.71 198349 33 3371 196631 1.69 200002 34 3439 193820 1.74 197259 35 4388 193498 2.22 197886 36 3405 196213 1.71 199618 37 3361 189718 1.74 193079 38 4199 193822 2.12 198021 39 3038 192671 1.55 195709 40 3117 192273 1.60 195390 41 3205 191644 1.64 194849 42 3124 194076 1.58 197200 43 3100 188633 1.62 191733 44 3099 192679 1.58 195778 45 3154 191296 1.62 194450 46 3162 189190 1.64 192352 47 3607 189477 1.87 193084 48 3163 195248 1.59 198411 49 3178 187763 1.66 190941 50 3445 187971 1.80 191416 51 3193 190843 1.65 194036 52 3194 191359 1.64 194553 53 3290 187578 1.72 190868 54 3674 191433 1.88 195107 55 3438 187136 1.80 190574 56 3511 189087 1.82 192598 57 3543 189723 1.83 193266 58 3553 187384 1.86 190937 59 3742 186971 1.96 190713 60 3410 189714 1.77 193124 61 3665 184421 1.95 188086 62 3716 185637 1.96 189353 63 3817 183174 2.04 186991 64 3837 181566 2.07 185403 65 4921 181141 2.64 186062 66 3766 178285 2.07 182051 67 3819 173152 2.16 176971 68 4510 174421 2.52 178931 69 3309 174091 1.87 177400 70 3286 169560 1.90 172846 71 3374 169246 1.95 172620 72 3422 170045 1.97 173467 73 3419 167337 2.00 170756 74 3962 165413 2.34 169375 75 3118 166260 1.84 169378 76 3382 161077 2.06 164459 77 4147 161713 2.50 165860 78 3243 159118 2.00 162361 79 3218 154931 2.03 158149 80 3231 155452 2.04 158683 81 3098 153837 1.97 156935 82 3019 151068 1.96 154087 83 3323 153453 2.12 156776 84 3333 152848 2.13 156181 85 3255 149182 2.14 152437 86 3376 150150 2.20 153526 87 3347 150300 2.18 153647 88 3613 144406 2.44 148019 89 3448 145840 2.31 149288 90 2994 144906 2.02 147900 91 3113 141957 2.15 145070 92 3244 142658 2.22 145902 93 3484 141447 2.40 144931 94 3245 138890 2.28 142135 95 3329 136770 2.38 140099 96 3283 137093 2.34 140376 97 3375 124927 2.63 128302 98 3164 115131 2.67 118295 99 1744 74645 2.28 76389 100 2389 76070 3.04 78459 101 4161 123582 3.26 127743 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 173186 256296 40.32 429482 2 125469 274109 31.40 399578 3 85084 301865 21.99 386949 4 81814 318722 20.43 400536 5 81172 365827 18.16 446999 6 67963 396545 14.63 464508 7 47830 502904 8.68 550734 8 46167 543914 7.82 590081 9 34509 507108 6.37 541617 10 34966 493908 6.61 528874 11 46993 500032 8.59 547025 12 39119 505780 7.18 544899 13 43832 517829 7.80 561661 14 49761 531622 8.56 581383 15 40832 543687 6.99 584519 16 40726 550041 6.89 590767 17 49045 551335 8.17 600380 18 39222 572085 6.42 611307 19 39672 578324 6.42 617996 20 48215 599153 7.45 647368 21 39798 598585 6.23 638383 22 44873 596733 6.99 641606 23 48501 597519 7.51 646020 24 40704 598930 6.36 639634 25 45069 595830 7.03 640899 26 49088 604879 7.51 653967 27 41057 605121 6.35 646178 28 40385 610875 6.20 651260 29 48698 609473 7.40 658171 30 40274 601849 6.27 642123 31 41468 595855 6.51 637323 32 45499 596820 7.08 642319 33 39923 599211 6.25 639134 34 46726 602194 7.20 648920 35 48520 597860 7.51 646380 36 40469 602998 6.29 643467 37 39872 596132 6.27 636004 38 48870 601868 7.51 650738 39 39908 598008 6.26 637916 40 40850 594073 6.43 634923 41 48099 596536 7.46 644635 42 41595 599459 6.49 641054 43 44690 593470 7.00 638160 44 46434 597863 7.21 644297 45 42330 589087 6.70 631417 46 41075 591762 6.49 632837 47 44931 590645 7.07 635576 48 37485 591302 5.96 628787 49 38565 583044 6.20 621609 50 44383 582392 7.08 626775 51 37169 577201 6.05 614370 52 41109 576680 6.65 617789 53 44634 572633 7.23 617267 54 37786 573628 6.18 611414 55 39225 567229 6.47 606454 56 44625 568838 7.27 613463 57 36230 571333 5.96 607563 58 37632 569041 6.20 606673 59 44232 568182 7.22 612414 60 35866 561122 6.01 596988 61 39750 555695 6.68 595445 62 42390 550331 7.15 592721 63 35765 544076 6.17 579841 64 38975 540181 6.73 579156 65 40590 536125 7.04 576715 66 34675 530888 6.13 565563 67 35046 525125 6.26 560171 68 38857 523588 6.91 562445 69 33869 520577 6.11 554446 70 34850 515242 6.34 550092 71 39050 514289 7.06 553339 72 33466 512511 6.13 545977 73 38046 502366 7.04 540412 74 38966 502292 7.20 541258 75 33105 496448 6.25 529553 76 33697 490312 6.43 524009 77 39155 488521 7.42 527676 78 30808 485040 5.97 515848 79 33143 479810 6.46 512953 80 37459 478488 7.26 515947 81 32756 471773 6.49 504529 82 34432 465729 6.88 500161 83 37578 464990 7.48 502568 84 33049 458985 6.72 492034 85 31270 452259 6.47 483529 86 34651 448283 7.18 482934 87 30104 441662 6.38 471766 88 30645 430770 6.64 461415 89 34707 435895 7.38 470602 90 29528 433217 6.38 462745 91 30683 429178 6.67 459861 92 33422 427014 7.26 460436 93 28613 422958 6.34 451571 94 28929 418819 6.46 447748 95 32878 413246 7.37 446124 96 26966 405977 6.23 432943 97 26884 394660 6.38 421544 98 29805 367235 7.51 397040 99 16004 257521 5.85 273525 100 18770 227957 7.61 246727 101 28166 369932 7.08 398098 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 81843 89641 47.73 171484 2 70513 76036 48.12 146549 3 74262 84074 46.90 158336 4 67552 94010 41.81 161562 5 29350 118576 19.84 147926 6 18432 66085 21.81 84517 7 15952 71088 18.33 87040 8 16989 66465 20.36 83454 9 14357 56259 20.33 70616 10 15941 62513 20.32 78454 11 16980 62390 21.39 79370 12 16223 59774 21.35 75997 13 16914 57513 22.73 74427 14 17389 59960 22.48 77349 15 16854 53464 23.97 70318 16 16024 51368 23.78 67392 17 19833 56196 26.09 76029 18 18294 53520 25.47 71814 19 17672 53532 24.82 71204 20 16282 51894 23.88 68176 21 17226 49197 25.93 66423 22 17155 52082 24.78 69237 23 16190 49435 24.67 65625 24 15169 48497 23.83 63666 25 17059 49604 25.59 66663 26 15548 47769 24.56 63317 27 17143 48766 26.01 65909 28 15447 45017 25.55 60464 29 16003 47351 25.26 63354 30 15288 44416 25.61 59704 31 14700 46342 24.08 61042 32 14368 43093 25.00 57461 33 16434 43470 27.43 59904 34 15334 45806 25.08 61140 35 19346 49160 28.24 68506 36 15593 43292 26.48 58885 37 16121 45438 26.19 61559 38 14742 42620 25.70 57362 39 15097 41589 26.63 56686 40 16600 42199 28.23 58799 41 14517 40778 26.25 55295 42 14723 42683 25.65 57406 43 14245 41420 25.59 55665 44 13488 39800 25.31 53288 45 16743 43737 27.68 60480 46 13228 37531 26.06 50759 47 13663 38640 26.12 52303 48 13365 38103 25.97 51468 49 12886 39870 24.43 52756 50 12376 35995 25.59 48371 51 12359 35393 25.88 47752 52 12347 36567 25.24 48914 53 12602 35129 26.40 47731 54 12505 35175 26.23 47680 55 12594 33498 27.32 46092 56 11510 33075 25.82 44585 57 11905 33718 26.09 45623 58 11560 33591 25.60 45151 59 10798 30953 25.86 41751 60 11159 31381 26.23 42540 61 10030 30807 24.56 40837 62 10341 29398 26.02 39739 63 11034 29667 27.11 40701 64 10429 29723 25.97 40152 65 10073 27970 26.48 38043 66 10765 28997 27.07 39762 67 9793 29616 24.85 39409 68 10686 30736 25.80 41422 69 9663 28692 25.19 38355 70 9485 28105 25.23 37590 71 9751 26045 27.24 35796 72 9252 25195 26.86 34447 73 9202 26227 25.97 35429 74 8347 25374 24.75 33721 75 8650 25941 25.01 34591 76 8869 24777 26.36 33646 77 8479 24706 25.55 33185 78 8279 24967 24.90 33246 79 8163 23912 25.45 32075 80 7981 23550 25.31 31531 81 8060 23789 25.31 31849 82 8038 23455 25.52 31493 83 8206 22141 27.04 30347 84 9063 24440 27.05 33503 85 7625 22801 25.06 30426 86 7501 22257 25.21 29758 87 7566 22160 25.45 29726 88 7579 21973 25.65 29552 89 8160 22541 26.58 30701 90 7970 21894 26.69 29864 91 7276 21400 25.37 28676 92 7067 21084 25.10 28151 93 7118 20911 25.40 28029 94 7416 21016 26.08 28432 95 7311 20186 26.59 27497 96 7041 20196 25.85 27237 97 7821 21573 26.61 29394 98 6763 19386 25.86 26149 99 6125 0 100.00 6125 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 24346 107756 18.43 132102 2 23628 109274 17.78 132902 3 22317 112234 16.59 134551 4 23784 121449 16.38 145233 5 4306 216752 1.95 221058 6 2911 265269 1.09 268180 7 1843 151094 1.21 152937 8 1938 164621 1.16 166559 9 1912 133621 1.41 135533 10 1875 128334 1.44 130209 11 2757 177691 1.53 180448 12 1981 136812 1.43 138793 13 1994 135757 1.45 137751 14 2028 131846 1.51 133874 15 1887 128500 1.45 130387 16 1728 119067 1.43 120795 17 1938 126901 1.50 128839 18 2560 110478 2.26 113038 19 1960 112385 1.71 114345 20 1946 111303 1.72 113249 21 2656 103678 2.50 106334 22 2163 117753 1.80 119916 23 1967 115119 1.68 117086 24 1644 102086 1.58 103730 25 1755 104169 1.66 105924 26 1981 110442 1.76 112423 27 1915 102086 1.84 104001 28 1776 99108 1.76 100884 29 2007 106750 1.85 108757 30 1894 99062 1.88 100956 31 1726 96866 1.75 98592 32 1696 98602 1.69 100298 33 2013 117079 1.69 119092 34 1773 95921 1.81 97694 35 1937 100338 1.89 102275 36 1814 98762 1.80 100576 37 1678 90687 1.82 92365 38 1925 98593 1.92 100518 39 1926 91970 2.05 93896 40 1774 88671 1.96 90445 41 1948 87574 2.18 89522 42 1890 81076 2.28 82966 43 2051 85597 2.34 87648 44 1633 84318 1.90 85951 45 1692 76271 2.17 77963 46 1613 77300 2.04 78913 47 1881 79452 2.31 81333 48 1795 75429 2.32 77224 49 1728 79934 2.12 81662 50 1978 76919 2.51 78897 51 1685 71095 2.32 72780 52 1798 70599 2.48 72397 53 1917 77827 2.40 79744 54 1597 70516 2.21 72113 55 1691 72405 2.28 74096 56 1589 70108 2.22 71697 57 2004 67514 2.88 69518 58 1595 68888 2.26 70483 59 1320 68133 1.90 69453 60 1522 64860 2.29 66382 61 1167 64313 1.78 65480 62 1154 68935 1.65 70089 63 999 68226 1.44 69225 64 976 60936 1.58 61912 65 1074 65761 1.61 66835 66 999 58995 1.67 59994 67 1034 65102 1.56 66136 68 1002 63511 1.55 64513 69 1024 60193 1.67 61217 70 982 60984 1.58 61966 71 966 62630 1.52 63596 72 923 56341 1.61 57264 73 860 57103 1.48 57963 74 890 59152 1.48 60042 75 859 55770 1.52 56629 76 791 54193 1.44 54984 77 815 58446 1.38 59261 78 895 55143 1.60 56038 79 851 54937 1.53 55788 80 781 52689 1.46 53470 81 797 50576 1.55 51373 82 892 50006 1.75 50898 83 825 52183 1.56 53008 84 798 49317 1.59 50115 85 842 56233 1.48 57075 86 828 50190 1.62 51018 87 862 49504 1.71 50366 88 784 47191 1.63 47975 89 941 51245 1.80 52186 90 811 49862 1.60 50673 91 822 51262 1.58 52084 92 784 48468 1.59 49252 93 738 46163 1.57 46901 94 783 46184 1.67 46967 95 812 45892 1.74 46704 96 910 44581 2.00 45491 97 729 44447 1.61 45176 98 660 43236 1.50 43896 99 614 0 100.00 614 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 55532 142469 28.05 198001 2 50795 115516 30.54 166311 3 53579 117660 31.29 171239 4 56503 115745 32.80 172248 5 25852 236391 9.86 262243 6 24764 326939 7.04 351703 7 26275 435925 5.68 462200 8 23087 430604 5.09 453691 9 27084 403521 6.29 430605 10 25694 412309 5.87 438003 11 24390 408198 5.64 432588 12 22879 380703 5.67 403582 13 23458 395902 5.59 419360 14 23328 397692 5.54 421020 15 22543 410526 5.21 433069 16 21461 392343 5.19 413804 17 22491 396109 5.37 418600 18 21094 394878 5.07 415972 19 20150 364416 5.24 384566 20 23234 387930 5.65 411164 21 21573 361334 5.63 382907 22 23168 350611 6.20 373779 23 22133 344605 6.04 366738 24 20169 328068 5.79 348237 25 22828 328365 6.50 351193 26 20507 325725 5.92 346232 27 21425 348921 5.79 370346 28 21066 333506 5.94 354572 29 20738 328854 5.93 349592 30 21842 315522 6.47 337364 31 21082 304991 6.47 326073 32 19846 296681 6.27 316527 33 21431 292822 6.82 314253 34 20695 293303 6.59 313998 35 20372 302379 6.31 322751 36 18899 302093 5.89 320992 37 19097 295478 6.07 314575 38 19925 308251 6.07 328176 39 19892 282390 6.58 302282 40 19234 294721 6.13 313955 41 19525 278307 6.56 297832 42 19437 284785 6.39 304222 43 19649 267028 6.85 286677 44 17382 266249 6.13 283631 45 18173 265972 6.40 284145 46 17541 266711 6.17 284252 47 16509 260990 5.95 277499 48 17003 254587 6.26 271590 49 16555 257185 6.05 273740 50 16249 252640 6.04 268889 51 16506 245264 6.31 261770 52 15610 230544 6.34 246154 53 15360 233846 6.16 249206 54 14515 227887 5.99 242402 55 14542 236000 5.80 250542 56 14381 229175 5.90 243556 57 13862 233147 5.61 247009 58 13334 225433 5.58 238767 59 13864 215920 6.03 229784 60 13117 221950 5.58 235067 61 13795 209627 6.17 223422 62 12885 207788 5.84 220673 63 12191 210189 5.48 222380 64 13105 203771 6.04 216876 65 11941 206836 5.46 218777 66 12076 200322 5.69 212398 67 11860 200001 5.60 211861 68 11363 208468 5.17 219831 69 11960 202386 5.58 214346 70 11747 195239 5.68 206986 71 11202 191461 5.53 202663 72 11987 190926 5.91 202913 73 11588 187776 5.81 199364 74 10892 188543 5.46 199435 75 10918 188537 5.47 199455 76 10632 180226 5.57 190858 77 11175 181241 5.81 192416 78 10865 181664 5.64 192529 79 10993 185453 5.60 196446 80 11005 178605 5.80 189610 81 11007 179711 5.77 190718 82 10961 175859 5.87 186820 83 9984 174997 5.40 184981 84 10444 175821 5.61 186265 85 10093 171032 5.57 181125 86 9557 171025 5.29 180582 87 9629 168805 5.40 178434 88 9514 163046 5.51 172560 89 9358 161457 5.48 170815 90 9539 163468 5.51 173007 91 9262 162220 5.40 171482 92 8842 160380 5.23 169222 93 8869 157537 5.33 166406 94 8438 156042 5.13 164480 95 8555 153059 5.29 161614 96 8233 150990 5.17 159223 97 7970 150976 5.01 158946 98 7310 143599 4.84 150909 99 5153 0 100.00 5153