Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-199_S24_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-199_S24_L003_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 15913069
Paired-end alignments with a unique best hit 8550693
Pairs without alignments under any condition 4729683
Pairs that did not map uniquely 2632693
Genomic sequence context not extractable (edges of chromosomes) 45046

Cytosine Methylation

Total C's analysed 259990101
Methylated C's in CpG context 9492646
Methylated C's in CHG context 1543069
Methylated C's in CHH context 9796003
Methylated C's in Unknown context 329556
Unmethylated C's in CpG context 28236558
Unmethylated C's in CHG context 55100132
Unmethylated C's in CHH context 155821693
Unmethylated C's in Unknown context 1311028
Percentage methylation (CpG context) 25.2%
Percentage methylation (CHG context) 2.7%
Percentage methylation (CHH context) 5.9%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 4208172 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 4297475 original bottom strand