CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 205103 271173 43.06 476276 2 197949 299163 39.82 497112 3 188766 273619 40.82 462385 4 200055 235537 45.93 435592 5 192736 208444 48.04 401180 6 194844 173132 52.95 367976 7 215241 170525 55.80 385766 8 101384 200940 33.53 302324 9 91015 188771 32.53 279786 10 89951 182395 33.03 272346 11 93265 188536 33.10 281801 12 90956 190398 32.33 281354 13 88974 191233 31.75 280207 14 84747 194574 30.34 279321 15 83503 196594 29.81 280097 16 76450 195344 28.13 271794 17 72719 191021 27.57 263740 18 74866 195173 27.72 270039 19 73398 194653 27.38 268051 20 74604 198175 27.35 272779 21 74182 199354 27.12 273536 22 72574 196025 27.02 268599 23 72738 196232 27.04 268970 24 72342 196269 26.93 268611 25 69717 193119 26.52 262836 26 71634 193282 27.04 264916 27 70875 198256 26.33 269131 28 73671 198867 27.03 272538 29 70857 197439 26.41 268296 30 70006 197932 26.13 267938 31 71053 194793 26.73 265846 32 69607 192013 26.61 261620 33 70776 195432 26.59 266208 34 72095 195312 26.96 267407 35 70533 195180 26.54 265713 36 69814 198235 26.05 268049 37 67907 192730 26.05 260637 38 67118 193237 25.78 260355 39 69253 194132 26.29 263385 40 68621 192276 26.30 260897 41 68350 192657 26.19 261007 42 70124 196963 26.26 267087 43 68166 194907 25.91 263073 44 68050 193155 26.05 261205 45 69563 193702 26.42 263265 46 69850 194340 26.44 264190 47 68545 192044 26.30 260589 48 68468 192501 26.24 260969 49 70674 193039 26.80 263713 50 67938 193950 25.94 261888 51 68489 193324 26.16 261813 52 68963 197071 25.92 266034 53 68044 190331 26.34 258375 54 66771 190227 25.98 256998 55 66602 187775 26.18 254377 56 66474 187120 26.21 253594 57 67824 190010 26.31 257834 58 68894 190360 26.57 259254 59 69759 188713 26.99 258472 60 67356 190208 26.15 257564 61 68649 187420 26.81 256069 62 67122 188947 26.21 256069 63 66705 187384 26.25 254089 64 65884 186056 26.15 251940 65 66093 184892 26.33 250985 66 67958 186375 26.72 254333 67 66415 182530 26.68 248945 68 65318 182322 26.38 247640 69 64337 181468 26.17 245805 70 64093 180332 26.22 244425 71 63178 176372 26.37 239550 72 62772 177949 26.08 240721 73 62183 176113 26.09 238296 74 61563 175545 25.96 237108 75 60640 176134 25.61 236774 76 60320 173968 25.75 234288 77 61778 172814 26.33 234592 78 61332 174287 26.03 235619 79 60053 171383 25.95 231436 80 58885 170755 25.64 229640 81 58925 169309 25.82 228234 82 56911 167164 25.40 224075 83 58365 169471 25.62 227836 84 58129 168386 25.66 226515 85 57190 165637 25.67 222827 86 56031 163421 25.53 219452 87 54490 162872 25.07 217362 88 54910 160084 25.54 214994 89 54160 159755 25.32 213915 90 54291 161580 25.15 215871 91 53407 158357 25.22 211764 92 52516 158466 24.89 210982 93 52438 156671 25.08 209109 94 52626 156774 25.13 209400 95 51211 154569 24.89 205780 96 51226 153820 24.98 205046 97 50431 149392 25.24 199823 98 46842 142075 24.80 188917 99 37522 111563 25.17 149085 100 48469 141322 25.54 189791 101 44441 141499 23.90 185940 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 265505 384757 40.83 650262 2 153252 366063 29.51 519315 3 65167 362151 15.25 427318 4 37953 365880 9.40 403833 5 25257 334747 7.02 360004 6 20409 312238 6.14 332647 7 17072 396838 4.12 413910 8 8536 432333 1.94 440869 9 6895 409567 1.66 416462 10 6862 395050 1.71 401912 11 7181 401053 1.76 408234 12 6994 401054 1.71 408048 13 6456 388075 1.64 394531 14 6025 391862 1.51 397887 15 6059 402953 1.48 409012 16 5346 401706 1.31 407052 17 5994 397611 1.49 403605 18 5557 396613 1.38 402170 19 4921 399030 1.22 403951 20 5348 418532 1.26 423880 21 4970 423235 1.16 428205 22 5311 416255 1.26 421566 23 5528 423670 1.29 429198 24 5171 427227 1.20 432398 25 5689 413821 1.36 419510 26 6867 418997 1.61 425864 27 5136 425854 1.19 430990 28 4971 424711 1.16 429682 29 5987 429838 1.37 435825 30 4956 429588 1.14 434544 31 4771 419838 1.12 424609 32 5249 423203 1.23 428452 33 5035 427991 1.16 433026 34 4962 420200 1.17 425162 35 6016 423403 1.40 429419 36 5055 425202 1.17 430257 37 4979 413221 1.19 418200 38 5764 421275 1.35 427039 39 5042 418349 1.19 423391 40 4782 418642 1.13 423424 41 4930 420633 1.16 425563 42 4853 420976 1.14 425829 43 4973 413640 1.19 418613 44 4869 419218 1.15 424087 45 4771 420034 1.12 424805 46 4965 415878 1.18 420843 47 5257 418737 1.24 423994 48 4903 427853 1.13 432756 49 4931 415914 1.17 420845 50 5268 415648 1.25 420916 51 4825 420574 1.13 425399 52 5072 421367 1.19 426439 53 5231 414673 1.25 419904 54 5329 422515 1.25 427844 55 5167 416255 1.23 421422 56 5388 419561 1.27 424949 57 5288 419636 1.24 424924 58 5363 415615 1.27 420978 59 5750 419262 1.35 425012 60 5460 421460 1.28 426920 61 5543 414868 1.32 420411 62 5865 415818 1.39 421683 63 5741 412637 1.37 418378 64 5881 408478 1.42 414359 65 7159 411192 1.71 418351 66 5884 404017 1.44 409901 67 5923 396357 1.47 402280 68 6378 398519 1.58 404897 69 5381 398888 1.33 404269 70 5282 389326 1.34 394608 71 5518 391602 1.39 397120 72 5552 390981 1.40 396533 73 5591 385806 1.43 391397 74 5932 387702 1.51 393634 75 5439 386636 1.39 392075 76 5845 374288 1.54 380133 77 6189 378509 1.61 384698 78 5334 374956 1.40 380290 79 5683 364241 1.54 369924 80 5414 367995 1.45 373409 81 5244 363963 1.42 369207 82 5282 357356 1.46 362638 83 5588 363580 1.51 369168 84 5700 362749 1.55 368449 85 5383 356296 1.49 361679 86 5566 355306 1.54 360872 87 6058 356078 1.67 362136 88 6914 342669 1.98 349583 89 5487 349646 1.55 355133 90 5210 348672 1.47 353882 91 5424 343308 1.56 348732 92 5616 346362 1.60 351978 93 5736 342620 1.65 348356 94 5679 336598 1.66 342277 95 5664 334554 1.66 340218 96 5783 333420 1.70 339203 97 5600 304057 1.81 309657 98 5242 281256 1.83 286498 99 3140 183069 1.69 186209 100 3796 184370 2.02 188166 101 7099 302858 2.29 309957 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 333401 510692 39.50 844093 2 193925 559884 25.73 753809 3 112374 636579 15.00 748953 4 102892 668144 13.34 771036 5 96241 778336 11.00 874577 6 80431 843026 8.71 923457 7 65061 1077426 5.69 1142487 8 49876 1168122 4.09 1217998 9 37990 1077708 3.41 1115698 10 37961 1045707 3.50 1083668 11 48047 1057157 4.35 1105204 12 40373 1074980 3.62 1115353 13 45593 1095692 3.99 1141285 14 49574 1127651 4.21 1177225 15 42806 1157889 3.57 1200695 16 41804 1175511 3.43 1217315 17 48679 1188733 3.93 1237412 18 40438 1233767 3.17 1274205 19 40563 1253258 3.14 1293821 20 47638 1296645 3.54 1344283 21 40642 1299451 3.03 1340093 22 44760 1300066 3.33 1344826 23 48970 1298423 3.63 1347393 24 41562 1297757 3.10 1339319 25 46495 1301031 3.45 1347526 26 48718 1316687 3.57 1365405 27 41772 1322174 3.06 1363946 28 41523 1333222 3.02 1374745 29 48286 1326697 3.51 1374983 30 41203 1313453 3.04 1354656 31 43057 1304233 3.20 1347290 32 46991 1303181 3.48 1350172 33 41078 1309281 3.04 1350359 34 47033 1317720 3.45 1364753 35 49195 1308576 3.62 1357771 36 41865 1320730 3.07 1362595 37 41144 1310392 3.04 1351536 38 49050 1318013 3.59 1367063 39 41224 1309518 3.05 1350742 40 42190 1307547 3.13 1349737 41 48586 1311419 3.57 1360005 42 43509 1317242 3.20 1360751 43 46245 1308427 3.41 1354672 44 47562 1319358 3.48 1366920 45 44004 1306624 3.26 1350628 46 43124 1311810 3.18 1354934 47 46528 1308710 3.43 1355238 48 40140 1308982 2.98 1349122 49 40706 1297587 3.04 1338293 50 46282 1296917 3.45 1343199 51 39892 1288636 3.00 1328528 52 43483 1282543 3.28 1326026 53 47035 1279621 3.55 1326656 54 40349 1279582 3.06 1319931 55 41913 1273215 3.19 1315128 56 46849 1273291 3.55 1320140 57 39572 1283328 2.99 1322900 58 40754 1280178 3.09 1320932 59 46530 1283835 3.50 1330365 60 39610 1272624 3.02 1312234 61 43081 1263128 3.30 1306209 62 44852 1252829 3.46 1297681 63 39538 1244769 3.08 1284307 64 42467 1240073 3.31 1282540 65 43687 1234315 3.42 1278002 66 38790 1229055 3.06 1267845 67 38808 1220931 3.08 1259739 68 42970 1214605 3.42 1257575 69 38131 1213109 3.05 1251240 70 38529 1204695 3.10 1243224 71 42640 1202517 3.42 1245157 72 37977 1200920 3.07 1238897 73 41726 1185283 3.40 1227009 74 42896 1183319 3.50 1226215 75 37947 1174842 3.13 1212789 76 39397 1164127 3.27 1203524 77 43207 1162917 3.58 1206124 78 35367 1154188 2.97 1189555 79 37894 1144786 3.20 1182680 80 41686 1141111 3.52 1182797 81 37380 1128956 3.20 1166336 82 39496 1119922 3.41 1159418 83 41653 1119405 3.59 1161058 84 38227 1106957 3.34 1145184 85 36027 1095681 3.18 1131708 86 39117 1086754 3.47 1125871 87 36405 1074118 3.28 1110523 88 38588 1049762 3.55 1088350 89 39249 1064197 3.56 1103446 90 34143 1059996 3.12 1094139 91 35576 1049817 3.28 1085393 92 37420 1045766 3.45 1083186 93 34094 1039678 3.18 1073772 94 34118 1027986 3.21 1062104 95 37456 1020335 3.54 1057791 96 32121 1000809 3.11 1032930 97 32049 975691 3.18 1007740 98 34135 909725 3.62 943860 99 20032 634548 3.06 654580 100 22184 568037 3.76 590221 101 32775 923385 3.43 956160 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 180818 203946 46.99 384764 2 156425 175510 47.13 331935 3 166615 195166 46.05 361781 4 152676 219662 41.00 372338 5 67620 283415 19.26 351035 6 41080 155207 20.93 196287 7 36228 163826 18.11 200054 8 37545 154111 19.59 191656 9 33670 133536 20.14 167206 10 36146 147824 19.65 183970 11 38969 144879 21.20 183848 12 37555 138627 21.32 176182 13 38680 135211 22.24 173891 14 40500 139782 22.46 180282 15 39442 127579 23.61 167021 16 36969 122116 23.24 159085 17 44181 132272 25.04 176453 18 43224 128274 25.20 171498 19 41210 126080 24.63 167290 20 38312 122800 23.78 161112 21 40187 118121 25.39 158308 22 39981 122630 24.59 162611 23 37670 117730 24.24 155400 24 36195 113489 24.18 149684 25 40123 117765 25.41 157888 26 36383 113101 24.34 149484 27 39202 114465 25.51 153667 28 36094 109256 24.83 145350 29 37671 113234 24.96 150905 30 36433 106166 25.55 142599 31 34934 110120 24.08 145054 32 34049 103299 24.79 137348 33 38106 105088 26.61 143194 34 36685 109764 25.05 146449 35 44228 117617 27.33 161845 36 36539 104910 25.83 141449 37 37808 108480 25.84 146288 38 34141 102612 24.97 136753 39 35507 101260 25.96 136767 40 38536 101403 27.54 139939 41 34029 98917 25.60 132946 42 34326 102853 25.02 137179 43 34697 100500 25.66 135197 44 32559 97062 25.12 129621 45 39287 106491 26.95 145778 46 31644 92269 25.54 123913 47 32331 94546 25.48 126877 48 32687 93768 25.85 126455 49 31129 97469 24.21 128598 50 29963 88781 25.23 118744 51 29944 87368 25.53 117312 52 30305 89716 25.25 120021 53 31180 87443 26.28 118623 54 30386 88263 25.61 118649 55 30361 85117 26.29 115478 56 27902 84835 24.75 112737 57 29380 84944 25.70 114324 58 28415 85181 25.01 113596 59 26880 79596 25.25 106476 60 28309 80446 26.03 108755 61 24985 78348 24.18 103333 62 25625 75749 25.28 101374 63 27688 75711 26.78 103399 64 25938 76421 25.34 102359 65 25309 72536 25.87 97845 66 26605 75256 26.12 101861 67 24643 75813 24.53 100456 68 27150 78551 25.69 105701 69 24241 72518 25.05 96759 70 23977 71439 25.13 95416 71 24824 67497 26.89 92321 72 23366 66077 26.12 89443 73 23084 67628 25.45 90712 74 21513 66206 24.52 87719 75 22036 66540 24.88 88576 76 22121 63998 25.69 86119 77 21871 64202 25.41 86073 78 21642 64185 25.22 85827 79 20936 62283 25.16 83219 80 20549 61126 25.16 81675 81 20605 61290 25.16 81895 82 20482 61584 24.96 82066 83 20913 58723 26.26 79636 84 22760 63887 26.27 86647 85 19906 59407 25.10 79313 86 19597 58177 25.20 77774 87 19275 57801 25.01 77076 88 19311 56940 25.33 76251 89 20620 58283 26.13 78903 90 20428 56883 26.42 77311 91 18876 55230 25.47 74106 92 18190 54738 24.94 72928 93 18181 54911 24.87 73092 94 19170 54962 25.86 74132 95 18857 54050 25.86 72907 96 17911 52815 25.32 70726 97 19655 56722 25.73 76377 98 17467 50971 25.52 68438 99 15639 0 100.00 15639 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 52101 252888 17.08 304989 2 53208 257840 17.11 311048 3 49679 263456 15.87 313135 4 54022 285379 15.92 339401 5 6580 518756 1.25 525336 6 4790 632766 0.75 637556 7 3038 356203 0.85 359241 8 3230 381109 0.84 384339 9 2995 315148 0.94 318143 10 2897 301455 0.95 304352 11 4439 405682 1.08 410121 12 3258 323614 1.00 326872 13 3193 321250 0.98 324443 14 3378 307297 1.09 310675 15 3216 299992 1.06 303208 16 2970 279840 1.05 282810 17 3280 298853 1.09 302133 18 3843 264728 1.43 268571 19 3097 265519 1.15 268616 20 2946 263183 1.11 266129 21 3684 248820 1.46 252504 22 3141 275156 1.13 278297 23 3004 271754 1.09 274758 24 2790 245037 1.13 247827 25 2946 250653 1.16 253599 26 2989 262562 1.13 265551 27 2885 246013 1.16 248898 28 2781 236202 1.16 238983 29 3080 253035 1.20 256115 30 2890 240945 1.19 243835 31 2713 233032 1.15 235745 32 2609 237486 1.09 240095 33 3047 277916 1.08 280963 34 2670 232519 1.14 235189 35 2795 240429 1.15 243224 36 2635 238064 1.09 240699 37 2629 220904 1.18 223533 38 2809 236299 1.17 239108 39 2801 220666 1.25 223467 40 2729 217705 1.24 220434 41 2838 212875 1.32 215713 42 2751 200581 1.35 203332 43 2778 209831 1.31 212609 44 2605 207394 1.24 209999 45 2531 191240 1.31 193771 46 2544 193613 1.30 196157 47 2845 198167 1.42 201012 48 2644 190143 1.37 192787 49 2721 199758 1.34 202479 50 2846 192636 1.46 195482 51 2570 179761 1.41 182331 52 2597 178560 1.43 181157 53 2837 198851 1.41 201688 54 2537 181453 1.38 183990 55 2576 182100 1.39 184676 56 2427 178496 1.34 180923 57 2959 173373 1.68 176332 58 2425 173361 1.38 175786 59 2187 175471 1.23 177658 60 2347 167842 1.38 170189 61 1975 168664 1.16 170639 62 1887 173721 1.07 175608 63 1871 175169 1.06 177040 64 1701 158810 1.06 160511 65 1830 167963 1.08 169793 66 1703 154098 1.09 155801 67 1773 166717 1.05 168490 68 1746 163286 1.06 165032 69 1749 157752 1.10 159501 70 1614 158072 1.01 159686 71 1704 162511 1.04 164215 72 1578 148952 1.05 150530 73 1548 148762 1.03 150310 74 1549 152898 1.00 154447 75 1524 145344 1.04 146868 76 1405 141857 0.98 143262 77 1650 150936 1.08 152586 78 1627 144118 1.12 145745 79 1542 143007 1.07 144549 80 1463 137553 1.05 139016 81 1567 133849 1.16 135416 82 1532 131441 1.15 132973 83 1492 134403 1.10 135895 84 1409 129677 1.07 131086 85 1519 144579 1.04 146098 86 1423 130670 1.08 132093 87 1411 129366 1.08 130777 88 1440 123858 1.15 125298 89 1539 132541 1.15 134080 90 1570 129472 1.20 131042 91 1504 133209 1.12 134713 92 1415 125477 1.12 126892 93 1374 121745 1.12 123119 94 1332 119362 1.10 120694 95 1414 122685 1.14 124099 96 1440 116340 1.22 117780 97 1384 116069 1.18 117453 98 1113 114712 0.96 115825 99 979 0 100.00 979 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 88488 333932 20.95 422420 2 76040 272472 21.82 348512 3 78243 277867 21.97 356110 4 79216 273872 22.44 353088 5 24982 552215 4.33 577197 6 24557 765014 3.11 789571 7 25749 1031226 2.44 1056975 8 24432 1018343 2.34 1042775 9 27665 956943 2.81 984608 10 25478 978272 2.54 1003750 11 25323 965788 2.56 991111 12 24354 906718 2.62 931072 13 23899 936672 2.49 960571 14 24326 941170 2.52 965496 15 23448 965099 2.37 988547 16 21698 929319 2.28 951017 17 23551 933813 2.46 957364 18 22688 929739 2.38 952427 19 20601 864199 2.33 884800 20 23480 917943 2.49 941423 21 22261 858319 2.53 880580 22 23528 834542 2.74 858070 23 22526 822194 2.67 844720 24 20765 788827 2.56 809592 25 22810 787411 2.82 810221 26 21482 785557 2.66 807039 27 22078 834913 2.58 856991 28 20756 801771 2.52 822527 29 21597 788897 2.66 810494 30 22319 763378 2.84 785697 31 20983 746866 2.73 767849 32 20473 725985 2.74 746458 33 21844 718771 2.95 740615 34 20823 717981 2.82 738804 35 21304 741359 2.79 762663 36 19669 737541 2.60 757210 37 19540 726847 2.62 746387 38 21179 758394 2.72 779573 39 20904 699609 2.90 720513 40 20324 731529 2.70 751853 41 20485 692460 2.87 712945 42 20469 706378 2.82 726847 43 20450 670442 2.96 690892 44 18565 668788 2.70 687353 45 19872 668418 2.89 688290 46 18906 675691 2.72 694597 47 17867 662119 2.63 679986 48 18519 647168 2.78 665687 49 18160 655428 2.70 673588 50 18037 645537 2.72 663574 51 18358 629623 2.83 647981 52 17230 597989 2.80 615219 53 17078 601216 2.76 618294 54 16364 588536 2.71 604900 55 16406 606804 2.63 623210 56 16280 590370 2.68 606650 57 16024 603932 2.58 619956 58 14894 586483 2.48 601377 59 15797 563662 2.73 579459 60 15349 575340 2.60 590689 61 15605 552549 2.75 568154 62 14934 546430 2.66 561364 63 14291 550263 2.53 564554 64 14736 533913 2.69 548649 65 14069 542064 2.53 556133 66 13958 524374 2.59 538332 67 13440 524521 2.50 537961 68 13633 541945 2.45 555578 69 14030 527816 2.59 541846 70 13345 510685 2.55 524030 71 13382 502832 2.59 516214 72 13704 501300 2.66 515004 73 13229 496022 2.60 509251 74 12778 495088 2.52 507866 75 12759 494515 2.52 507274 76 12188 476617 2.49 488805 77 13307 475837 2.72 489144 78 12788 479197 2.60 491985 79 12569 485925 2.52 498494 80 12631 469836 2.62 482467 81 13167 471391 2.72 484558 82 12687 464153 2.66 476840 83 11916 462441 2.51 474357 84 12448 459286 2.64 471734 85 11586 450149 2.51 461735 86 11556 448386 2.51 459942 87 11542 445439 2.53 456981 88 11128 429786 2.52 440914 89 11327 427472 2.58 438799 90 11239 429576 2.55 440815 91 10703 427121 2.44 437824 92 10537 420563 2.44 431100 93 10453 416313 2.45 426766 94 10068 413423 2.38 423491 95 10246 405016 2.47 415262 96 9839 400243 2.40 410082 97 9296 400919 2.27 410215 98 8672 381714 2.22 390386 99 6096 0 100.00 6096