Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-194_S23_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-194_S23_L003_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 27459153
Paired-end alignments with a unique best hit 16621823
Pairs without alignments under any condition 6266029
Pairs that did not map uniquely 4571301
Genomic sequence context not extractable (edges of chromosomes) 83682

Cytosine Methylation

Total C's analysed 524582345
Methylated C's in CpG context 18542819
Methylated C's in CHG context 2613561
Methylated C's in CHH context 10840662
Methylated C's in Unknown context 314640
Unmethylated C's in CpG context 56657861
Unmethylated C's in CHG context 113333243
Unmethylated C's in CHH context 322594199
Unmethylated C's in Unknown context 2603525
Percentage methylation (CpG context) 24.7%
Percentage methylation (CHG context) 2.3%
Percentage methylation (CHH context) 3.3%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 8210151 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 8327990 original bottom strand