CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 134023 212416 38.69 346439 2 130657 235758 35.66 366415 3 129380 225805 36.43 355185 4 138500 202278 40.64 340778 5 136553 174197 43.94 310750 6 136199 147541 48.00 283740 7 151098 145180 51.00 296278 8 76163 168522 31.13 244685 9 68599 156817 30.43 225416 10 68964 153658 30.98 222622 11 71815 159074 31.10 230889 12 69546 158918 30.44 228464 13 68706 161344 29.87 230050 14 65901 164958 28.55 230859 15 64375 164809 28.09 229184 16 60083 166091 26.56 226174 17 57616 162272 26.20 219888 18 59220 165614 26.34 224834 19 57881 165271 25.94 223152 20 57923 168159 25.62 226082 21 57815 168396 25.56 226211 22 56932 166386 25.49 223318 23 56273 165481 25.38 221754 24 55863 166366 25.14 222229 25 54683 164261 24.98 218944 26 55402 163909 25.26 219311 27 54801 167367 24.67 222168 28 55654 167634 24.92 223288 29 54349 165903 24.68 220252 30 53889 166518 24.45 220407 31 54957 164880 25.00 219837 32 54303 162932 25.00 217235 33 54485 165831 24.73 220316 34 55415 164610 25.19 220025 35 54901 164204 25.06 219105 36 54509 166555 24.66 221064 37 52940 163001 24.52 215941 38 52424 161862 24.46 214286 39 53676 163433 24.72 217109 40 52940 160855 24.76 213795 41 53153 160981 24.82 214134 42 53932 163942 24.75 217874 43 52879 162146 24.59 215025 44 52782 161308 24.65 214090 45 53122 160409 24.88 213531 46 53521 161546 24.89 215067 47 52432 158483 24.86 210915 48 52763 160188 24.78 212951 49 53709 159493 25.19 213202 50 51947 160114 24.50 212061 51 52748 159702 24.83 212450 52 53191 162325 24.68 215516 53 51480 157105 24.68 208585 54 51026 157211 24.50 208237 55 51031 155194 24.75 206225 56 51021 154876 24.78 205897 57 51778 157825 24.70 209603 58 52910 157300 25.17 210210 59 53091 154128 25.62 207219 60 52670 156206 25.22 208876 61 53029 153827 25.64 206856 62 51620 153531 25.16 205151 63 50858 152116 25.06 202974 64 50192 150470 25.01 200662 65 50621 149257 25.33 199878 66 50777 149414 25.36 200191 67 50026 145861 25.54 195887 68 48869 146114 25.06 194983 69 49119 144426 25.38 193545 70 48142 142979 25.19 191121 71 46844 139487 25.14 186331 72 46446 139793 24.94 186239 73 45908 138472 24.90 184380 74 45276 136958 24.84 182234 75 44197 136312 24.48 180509 76 44276 134723 24.74 178999 77 44210 132771 24.98 176981 78 44589 133792 25.00 178381 79 43026 130855 24.74 173881 80 42353 130945 24.44 173298 81 42001 129057 24.55 171058 82 40522 127735 24.08 168257 83 41355 127470 24.50 168825 84 40787 126922 24.32 167709 85 40368 124595 24.47 164963 86 39512 122838 24.34 162350 87 38082 121475 23.87 159557 88 38246 118825 24.35 157071 89 37683 118280 24.16 155963 90 37558 119464 23.92 157022 91 37094 116102 24.21 153196 92 36381 115942 23.88 152323 93 36191 115032 23.93 151223 94 36038 114180 23.99 150218 95 35455 112834 23.91 148289 96 34932 112859 23.64 147791 97 34267 108913 23.93 143180 98 32064 102496 23.83 134560 99 25324 81029 23.81 106353 100 32485 102249 24.11 134734 101 30313 102119 22.89 132432 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 175352 340694 33.98 516046 2 101422 334228 23.28 435650 3 46855 322514 12.69 369369 4 26949 316167 7.85 343116 5 18525 281523 6.17 300048 6 15158 270190 5.31 285348 7 12345 332056 3.58 344401 8 6480 355156 1.79 361636 9 5464 338167 1.59 343631 10 5602 329669 1.67 335271 11 5748 331662 1.70 337410 12 5609 332964 1.66 338573 13 5122 322924 1.56 328046 14 4926 322877 1.50 327803 15 5030 331210 1.50 336240 16 4457 333604 1.32 338061 17 5017 327263 1.51 332280 18 4724 326634 1.43 331358 19 4159 326189 1.26 330348 20 4361 341851 1.26 346212 21 4288 346206 1.22 350494 22 4535 339861 1.32 344396 23 4610 344807 1.32 349417 24 4315 348794 1.22 353109 25 4696 338768 1.37 343464 26 5376 341364 1.55 346740 27 4415 347713 1.25 352128 28 4225 346537 1.20 350762 29 4806 349983 1.35 354789 30 4238 349981 1.20 354219 31 4261 342745 1.23 347006 32 4543 346248 1.30 350791 33 4335 347601 1.23 351936 34 4497 341107 1.30 345604 35 5116 343093 1.47 348209 36 4406 346079 1.26 350485 37 4228 334666 1.25 338894 38 4788 341473 1.38 346261 39 4341 338088 1.27 342429 40 4278 339325 1.25 343603 41 4328 337968 1.26 342296 42 4350 339370 1.27 343720 43 4181 332242 1.24 336423 44 4288 336681 1.26 340969 45 4338 335286 1.28 339624 46 4370 332321 1.30 336691 47 4516 334010 1.33 338526 48 4113 340660 1.19 344773 49 4202 330939 1.25 335141 50 4497 332046 1.34 336543 51 4203 335296 1.24 339499 52 4375 334762 1.29 339137 53 4431 329480 1.33 333911 54 4613 336143 1.35 340756 55 4629 330061 1.38 334690 56 4620 333514 1.37 338134 57 4812 330933 1.43 335745 58 4844 328310 1.45 333154 59 5019 329040 1.50 334059 60 5051 330690 1.50 335741 61 5022 322710 1.53 327732 62 5031 323528 1.53 328559 63 5149 319681 1.59 324830 64 5199 316348 1.62 321547 65 5903 315236 1.84 321139 66 5263 309397 1.67 314660 67 5077 303545 1.65 308622 68 5494 305022 1.77 310516 69 4902 301095 1.60 305997 70 4805 294470 1.61 299275 71 4814 294834 1.61 299648 72 4652 294171 1.56 298823 73 4719 288783 1.61 293502 74 5164 288035 1.76 293199 75 4672 286367 1.61 291039 76 4810 275807 1.71 280617 77 5134 278009 1.81 283143 78 4573 273379 1.65 277952 79 4691 267925 1.72 272616 80 4537 267922 1.67 272459 81 4501 265750 1.67 270251 82 4454 258990 1.69 263444 83 4631 262792 1.73 267423 84 4758 260345 1.79 265103 85 4376 256158 1.68 260534 86 4776 253944 1.85 258720 87 4883 253886 1.89 258769 88 5373 243175 2.16 248548 89 4433 247155 1.76 251588 90 4401 246589 1.75 250990 91 4385 241103 1.79 245488 92 4390 242344 1.78 246734 93 4728 239689 1.93 244417 94 4474 235128 1.87 239602 95 4447 232469 1.88 236916 96 4513 230292 1.92 234805 97 4506 210867 2.09 215373 98 4135 194105 2.09 198240 99 2522 126321 1.96 128843 100 3055 128276 2.33 131331 101 5803 208816 2.70 214619 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 272802 500532 35.28 773334 2 155474 536567 22.47 692041 3 91347 572118 13.77 663465 4 80918 607398 11.76 688316 5 76437 700021 9.84 776458 6 64629 760366 7.83 824995 7 50409 929353 5.15 979762 8 40099 999537 3.86 1039636 9 32125 922846 3.36 954971 10 31265 895254 3.37 926519 11 40143 899442 4.27 939585 12 34145 901253 3.65 935398 13 37959 913851 3.99 951810 14 40563 938227 4.14 978790 15 35399 962006 3.55 997405 16 34717 973796 3.44 1008513 17 40024 982557 3.91 1022581 18 34268 1014389 3.27 1048657 19 34560 1033691 3.24 1068251 20 39819 1067241 3.60 1107060 21 34701 1069103 3.14 1103804 22 37314 1072415 3.36 1109729 23 40145 1069907 3.62 1110052 24 34632 1066858 3.14 1101490 25 38554 1069421 3.48 1107975 26 40402 1080886 3.60 1121288 27 35176 1087792 3.13 1122968 28 34871 1091850 3.09 1126721 29 40090 1088793 3.55 1128883 30 34766 1082921 3.11 1117687 31 34840 1070402 3.15 1105242 32 38648 1066043 3.50 1104691 33 34151 1072868 3.08 1107019 34 38208 1076559 3.43 1114767 35 39600 1066265 3.58 1105865 36 34519 1078467 3.10 1112986 37 33904 1069592 3.07 1103496 38 39809 1073321 3.58 1113130 39 34471 1066751 3.13 1101222 40 34347 1062805 3.13 1097152 41 39471 1062992 3.58 1102463 42 35191 1067503 3.19 1102694 43 36798 1058202 3.36 1095000 44 38038 1065537 3.45 1103575 45 35204 1056888 3.22 1092092 46 35220 1057156 3.22 1092376 47 37401 1055580 3.42 1092981 48 32379 1056165 2.97 1088544 49 32951 1046531 3.05 1079482 50 37133 1043425 3.44 1080558 51 32541 1034472 3.05 1067013 52 34193 1029856 3.21 1064049 53 36770 1021863 3.47 1058633 54 32583 1021028 3.09 1053611 55 33175 1012871 3.17 1046046 56 36330 1010022 3.47 1046352 57 31449 1011339 3.02 1042788 58 32460 1008557 3.12 1041017 59 36813 1006273 3.53 1043086 60 31435 995113 3.06 1026548 61 33723 983723 3.31 1017446 62 35042 970221 3.49 1005263 63 31007 962148 3.12 993155 64 32979 953708 3.34 986687 65 33959 946343 3.46 980302 66 30470 938348 3.15 968818 67 30472 927049 3.18 957521 68 32784 920822 3.44 953606 69 29376 914021 3.11 943397 70 29642 906263 3.17 935905 71 32626 899304 3.50 931930 72 29150 895893 3.15 925043 73 31644 879420 3.47 911064 74 32369 876482 3.56 908851 75 28660 865785 3.20 894445 76 30071 855887 3.39 885958 77 32416 850123 3.67 882539 78 27020 844210 3.10 871230 79 28691 833183 3.33 861874 80 31098 830779 3.61 861877 81 28251 820714 3.33 848965 82 29287 810112 3.49 839399 83 30929 805689 3.70 836618 84 28385 796121 3.44 824506 85 27130 785564 3.34 812694 86 28880 776282 3.59 805162 87 26994 762587 3.42 789581 88 28238 744348 3.65 772586 89 28979 751105 3.71 780084 90 25393 748220 3.28 773613 91 26191 737658 3.43 763849 92 27560 733232 3.62 760792 93 24860 725656 3.31 750516 94 25183 717742 3.39 742925 95 27878 708035 3.79 735913 96 24168 695862 3.36 720030 97 23828 677314 3.40 701142 98 25417 630292 3.88 655709 99 14738 440077 3.24 454815 100 16042 391853 3.93 407895 101 24407 634954 3.70 659361 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 123916 152864 44.77 276780 2 107334 133646 44.54 240980 3 114441 149399 43.38 263840 4 107132 169038 38.79 276170 5 46268 217800 17.52 264068 6 28395 118881 19.28 147276 7 24610 124552 16.50 149162 8 26125 117508 18.19 143633 9 22305 101229 18.06 123534 10 24878 112492 18.11 137370 11 26106 110483 19.11 136589 12 25292 105921 19.28 131213 13 25897 103268 20.05 129165 14 27050 105731 20.37 132781 15 26551 96155 21.64 122706 16 25314 93109 21.38 118423 17 30678 100579 23.37 131257 18 28933 97417 22.90 126350 19 27659 95647 22.43 123306 20 25657 92132 21.78 117789 21 26816 89528 23.05 116344 22 26496 92796 22.21 119292 23 25035 88824 21.99 113859 24 23902 85600 21.83 109502 25 26370 88072 23.04 114442 26 24164 84466 22.24 108630 27 25914 85886 23.18 111800 28 23705 80138 22.83 103843 29 25174 84235 23.01 109409 30 23948 78382 23.40 102330 31 23031 80747 22.19 103778 32 22265 75653 22.74 97918 33 24621 77075 24.21 101696 34 23740 80229 22.83 103969 35 28913 85265 25.32 114178 36 23662 75760 23.80 99422 37 24234 77788 23.75 102022 38 22260 74160 23.09 96420 39 23180 72491 24.23 95671 40 24688 72700 25.35 97388 41 21770 70473 23.60 92243 42 22076 73311 23.14 95387 43 21972 71680 23.46 93652 44 20374 67879 23.09 88253 45 24652 73886 25.02 98538 46 19926 64488 23.61 84414 47 20336 66128 23.52 86464 48 20031 65020 23.55 85051 49 19487 67743 22.34 87230 50 18163 61092 22.92 79255 51 18312 59588 23.51 77900 52 18724 61448 23.35 80172 53 18731 59627 23.90 78358 54 18169 59950 23.26 78119 55 18184 57063 24.17 75247 56 16857 56224 23.07 73081 57 17313 56600 23.42 73913 58 16934 55858 23.26 72792 59 15984 52313 23.40 68297 60 16187 52320 23.63 68507 61 14790 50809 22.55 65599 62 14992 49683 23.18 64675 63 15797 48853 24.43 64650 64 14774 49266 23.07 64040 65 14797 46737 24.05 61534 66 15276 48420 23.98 63696 67 14263 49253 22.46 63516 68 15382 50746 23.26 66128 69 14302 46331 23.59 60633 70 13434 45903 22.64 59337 71 14118 42620 24.88 56738 72 13347 41875 24.17 55222 73 13023 42913 23.28 55936 74 11979 41700 22.32 53679 75 12222 42216 22.45 54438 76 12483 40314 23.64 52797 77 12535 40629 23.58 53164 78 12148 40772 22.96 52920 79 11644 38958 23.01 50602 80 11516 38511 23.02 50027 81 11307 38461 22.72 49768 82 11614 38269 23.28 49883 83 11597 36749 23.99 48346 84 12611 39949 23.99 52560 85 11018 37425 22.74 48443 86 11005 36438 23.20 47443 87 10835 36082 23.09 46917 88 10822 35689 23.27 46511 89 11428 35955 24.12 47383 90 11105 35546 23.80 46651 91 10391 34645 23.07 45036 92 10048 34425 22.59 44473 93 10228 34226 23.01 44454 94 10719 33631 24.17 44350 95 10216 33003 23.64 43219 96 9954 32967 23.19 42921 97 10830 34622 23.83 45452 98 9652 31437 23.49 41089 99 8595 0 100.00 8595 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 39828 187639 17.51 227467 2 40247 192105 17.32 232352 3 37546 196521 16.04 234067 4 40495 208848 16.24 249343 5 5276 384835 1.35 390111 6 3787 465102 0.81 468889 7 2428 261401 0.92 263829 8 2396 277071 0.86 279467 9 2288 230776 0.98 233064 10 2156 221344 0.96 223500 11 3199 298240 1.06 301439 12 2365 236487 0.99 238852 13 2317 234026 0.98 236343 14 2445 225250 1.07 227695 15 2349 217939 1.07 220288 16 2182 201492 1.07 203674 17 2448 218206 1.11 220654 18 2756 191578 1.42 194334 19 2446 192960 1.25 195406 20 2436 189686 1.27 192122 21 3034 180288 1.66 183322 22 2640 199135 1.31 201775 23 2483 195575 1.25 198058 24 2226 175821 1.25 178047 25 2351 178965 1.30 181316 26 2440 188959 1.27 191399 27 2448 176054 1.37 178502 28 2229 167402 1.31 169631 29 2544 179312 1.40 181856 30 2370 169916 1.38 172286 31 2242 164699 1.34 166941 32 2244 168025 1.32 170269 33 2594 195425 1.31 198019 34 2360 163153 1.43 165513 35 2581 166629 1.53 169210 36 2364 165199 1.41 167563 37 2292 153191 1.47 155483 38 2620 162834 1.58 165454 39 2538 154798 1.61 157336 40 2425 149646 1.59 152071 41 2673 144171 1.82 146844 42 2417 135159 1.76 137576 43 2553 142626 1.76 145179 44 2298 140345 1.61 142643 45 2192 127341 1.69 129533 46 2225 128713 1.70 130938 47 2384 131428 1.78 133812 48 2308 125643 1.80 127951 49 2274 130058 1.72 132332 50 2389 125562 1.87 127951 51 2103 117046 1.77 119149 52 2186 115585 1.86 117771 53 2426 127275 1.87 129701 54 2104 115092 1.80 117196 55 2062 116456 1.74 118518 56 1999 113709 1.73 115708 57 2248 109285 2.02 111533 58 1893 110681 1.68 112574 59 1598 109335 1.44 110933 60 1537 104193 1.45 105730 61 1309 103549 1.25 104858 62 1282 107471 1.18 108753 63 1196 109104 1.08 110300 64 1145 98047 1.15 99192 65 1134 102807 1.09 103941 66 1040 95107 1.08 96147 67 1198 103090 1.15 104288 68 1179 100708 1.16 101887 69 1131 96913 1.15 98044 70 1071 96430 1.10 97501 71 1115 98681 1.12 99796 72 1028 90580 1.12 91608 73 978 90659 1.07 91637 74 988 92232 1.06 93220 75 973 87742 1.10 88715 76 995 86255 1.14 87250 77 1051 90405 1.15 91456 78 958 88063 1.08 89021 79 978 85514 1.13 86492 80 899 83074 1.07 83973 81 933 80140 1.15 81073 82 981 79265 1.22 80246 83 997 80500 1.22 81497 84 897 77435 1.15 78332 85 939 86191 1.08 87130 86 928 77529 1.18 78457 87 899 78066 1.14 78965 88 902 73413 1.21 74315 89 975 79201 1.22 80176 90 966 76944 1.24 77910 91 939 79182 1.17 80121 92 866 75177 1.14 76043 93 864 72022 1.19 72886 94 811 70412 1.14 71223 95 882 72519 1.20 73401 96 1005 69105 1.43 70110 97 898 68951 1.29 69849 98 752 66808 1.11 67560 99 592 0 100.00 592 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 70873 258138 21.54 329011 2 60292 213490 22.02 273782 3 61802 213651 22.44 275453 4 62513 206505 23.24 269018 5 21098 412234 4.87 433332 6 20684 568806 3.51 589490 7 21439 761193 2.74 782632 8 20179 753290 2.61 773469 9 22754 707220 3.12 729974 10 20692 722536 2.78 743228 11 20477 711754 2.80 732231 12 19264 662662 2.82 681926 13 18619 688821 2.63 707440 14 19929 692778 2.80 712707 15 19063 709964 2.61 729027 16 17262 674410 2.50 691672 17 19277 679616 2.76 698893 18 18286 679414 2.62 697700 19 16799 628198 2.60 644997 20 19743 664535 2.89 684278 21 18462 619581 2.89 638043 22 18817 604864 3.02 623681 23 18593 593060 3.04 611653 24 17056 565567 2.93 582623 25 18778 563044 3.23 581822 26 17307 556792 3.01 574099 27 18219 591780 2.99 609999 28 17083 568085 2.92 585168 29 18017 557717 3.13 575734 30 18270 539163 3.28 557433 31 17283 522184 3.20 539467 32 16554 507063 3.16 523617 33 17873 497619 3.47 515492 34 16489 497754 3.21 514243 35 17506 510512 3.32 528018 36 16361 508544 3.12 524905 37 16123 499660 3.13 515783 38 17054 516146 3.20 533200 39 16845 476435 3.41 493280 40 16074 494639 3.15 510713 41 16850 467506 3.48 484356 42 16479 475030 3.35 491509 43 16083 447792 3.47 463875 44 14786 447142 3.20 461928 45 15667 443117 3.41 458784 46 14922 447128 3.23 462050 47 14404 436829 3.19 451233 48 14754 424299 3.36 439053 49 14084 426216 3.20 440300 50 13959 418263 3.23 432222 51 13974 406961 3.32 420935 52 12873 384495 3.24 397368 53 13213 387333 3.30 400546 54 12292 375655 3.17 387947 55 12318 385785 3.09 398103 56 12177 376575 3.13 388752 57 11965 380822 3.05 392787 58 11112 369559 2.92 380671 59 11267 354732 3.08 365999 60 10801 362245 2.90 373046 61 10681 344960 3.00 355641 62 10264 340403 2.93 350667 63 9975 342826 2.83 352801 64 10359 332546 3.02 342905 65 9837 336904 2.84 346741 66 9757 325858 2.91 335615 67 9545 325376 2.85 334921 68 9463 336005 2.74 345468 69 9832 326757 2.92 336589 70 9281 316597 2.85 325878 71 9057 309396 2.84 318453 72 9719 309027 3.05 318746 73 9072 303450 2.90 312522 74 8600 304177 2.75 312777 75 8783 304166 2.81 312949 76 8293 291865 2.76 300158 77 9099 290353 3.04 299452 78 8925 292818 2.96 301743 79 8624 297022 2.82 305646 80 8664 287063 2.93 295727 81 8761 287438 2.96 296199 82 8497 281463 2.93 289960 83 8062 280281 2.80 288343 84 8468 279899 2.94 288367 85 7757 273539 2.76 281296 86 7935 271912 2.84 279847 87 7752 268218 2.81 275970 88 7479 260501 2.79 267980 89 7591 258992 2.85 266583 90 7506 258942 2.82 266448 91 7250 255875 2.76 263125 92 7246 254552 2.77 261798 93 7021 251169 2.72 258190 94 6700 247291 2.64 253991 95 7089 241623 2.85 248712 96 6768 239192 2.75 245960 97 6374 238797 2.60 245171 98 5921 227442 2.54 233363 99 4161 0 100.00 4161