Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-193_S22_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-193_S22_L003_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 26770469
Paired-end alignments with a unique best hit 13927945
Pairs without alignments under any condition 8441595
Pairs that did not map uniquely 4400929
Genomic sequence context not extractable (edges of chromosomes) 77516

Cytosine Methylation

Total C's analysed 416672418
Methylated C's in CpG context 13880163
Methylated C's in CHG context 2099749
Methylated C's in CHH context 8753985
Methylated C's in Unknown context 282402
Unmethylated C's in CpG context 46573632
Unmethylated C's in CHG context 89863615
Unmethylated C's in CHH context 255501274
Unmethylated C's in Unknown context 2137741
Percentage methylation (CpG context) 23.0%
Percentage methylation (CHG context) 2.3%
Percentage methylation (CHH context) 3.3%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 6900793 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 6949636 original bottom strand