CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 102237 200846 33.73 303083 2 96005 220990 30.29 316995 3 92569 198735 31.78 291304 4 95780 166641 36.50 262421 5 93931 143728 39.52 237659 6 95117 121642 43.88 216759 7 106430 121602 46.67 228032 8 52805 137017 27.82 189822 9 47643 127141 27.26 174784 10 47949 124300 27.84 172249 11 50095 126881 28.31 176976 12 48849 128042 27.62 176891 13 48265 130351 27.02 178616 14 45408 130579 25.80 175987 15 45114 130375 25.71 175489 16 42637 130143 24.68 172780 17 40246 126568 24.13 166814 18 41640 129630 24.31 171270 19 40929 129680 23.99 170609 20 41430 131620 23.94 173050 21 41149 131525 23.83 172674 22 40316 131027 23.53 171343 23 40513 129884 23.78 170397 24 40054 129981 23.56 170035 25 39275 128644 23.39 167919 26 39633 127132 23.77 166765 27 39224 131144 23.02 170368 28 40421 130082 23.71 170503 29 38936 131247 22.88 170183 30 38181 129765 22.73 167946 31 39266 128123 23.46 167389 32 38580 125986 23.44 164566 33 38754 127687 23.28 166441 34 38794 126981 23.40 165775 35 39173 126550 23.64 165723 36 38379 128186 23.04 166565 37 37552 125716 23.00 163268 38 37138 125516 22.83 162654 39 38592 127620 23.22 166212 40 37877 125191 23.23 163068 41 37782 124871 23.23 162653 42 38149 127306 23.06 165455 43 38036 125875 23.21 163911 44 37311 124730 23.03 162041 45 37663 125090 23.14 162753 46 37749 126475 22.99 164224 47 37393 123549 23.23 160942 48 37088 123581 23.08 160669 49 38356 124037 23.62 162393 50 37198 124973 22.94 162171 51 37223 124856 22.97 162079 52 38035 127613 22.96 165648 53 36510 122063 23.02 158573 54 36127 122149 22.83 158276 55 36323 119926 23.25 156249 56 35801 119146 23.11 154947 57 36639 120897 23.26 157536 58 37870 121116 23.82 158986 59 37896 119241 24.12 157137 60 37067 119941 23.61 157008 61 37848 117339 24.39 155187 62 36666 118761 23.59 155427 63 36163 116700 23.66 152863 64 35783 116358 23.52 152141 65 35720 114449 23.79 150169 66 36272 114307 24.09 150579 67 35568 111508 24.18 147076 68 34236 111192 23.54 145428 69 34346 109455 23.88 143801 70 33861 109509 23.62 143370 71 33030 107123 23.57 140153 72 32757 106337 23.55 139094 73 32538 104451 23.75 136989 74 32137 103719 23.66 135856 75 31423 102621 23.44 134044 76 31002 102086 23.29 133088 77 30880 100784 23.45 131664 78 30405 101159 23.11 131564 79 30016 98332 23.39 128348 80 29676 98021 23.24 127697 81 29287 96995 23.19 126282 82 28508 95735 22.95 124243 83 28585 96193 22.91 124778 84 28817 95371 23.20 124188 85 27789 93627 22.89 121416 86 27255 92126 22.83 119381 87 26660 90925 22.67 117585 88 26361 89026 22.85 115387 89 26021 89231 22.58 115252 90 26195 88518 22.84 114713 91 25745 87628 22.71 113373 92 25246 86954 22.50 112200 93 24765 85612 22.44 110377 94 24899 85024 22.65 109923 95 24558 83907 22.64 108465 96 24495 84646 22.44 109141 97 23831 81241 22.68 105072 98 21944 76554 22.28 98498 99 17709 60678 22.59 78387 100 22279 76054 22.66 98333 101 20748 76031 21.44 96779 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 150771 261714 36.55 412485 2 88461 247611 26.32 336072 3 40569 237239 14.60 277808 4 22178 237780 8.53 259958 5 14277 217771 6.15 232048 6 13451 210102 6.02 223553 7 9166 254630 3.47 263796 8 4702 272982 1.69 277684 9 3852 259766 1.46 263618 10 3878 251467 1.52 255345 11 4310 249835 1.70 254145 12 4164 250948 1.63 255112 13 3700 244114 1.49 247814 14 3702 242878 1.50 246580 15 3698 250092 1.46 253790 16 3354 249630 1.33 252984 17 3881 245220 1.56 249101 18 3476 243531 1.41 247007 19 3052 244712 1.23 247764 20 3372 255587 1.30 258959 21 3333 258468 1.27 261801 22 3425 254959 1.33 258384 23 3505 258573 1.34 262078 24 3396 260088 1.29 263484 25 3607 252343 1.41 255950 26 4242 255677 1.63 259919 27 3239 258525 1.24 261764 28 3120 258281 1.19 261401 29 3680 260494 1.39 264174 30 3147 261845 1.19 264992 31 3196 255734 1.23 258930 32 3440 257903 1.32 261343 33 3165 258672 1.21 261837 34 3220 254255 1.25 257475 35 3768 255025 1.46 258793 36 3224 256748 1.24 259972 37 3222 249722 1.27 252944 38 3750 252717 1.46 256467 39 3287 251596 1.29 254883 40 3196 252188 1.25 255384 41 3202 251846 1.26 255048 42 3155 253031 1.23 256186 43 3058 248033 1.22 251091 44 3101 250596 1.22 253697 45 3171 249603 1.25 252774 46 3167 247275 1.26 250442 47 3334 247792 1.33 251126 48 3116 253440 1.21 256556 49 3160 247145 1.26 250305 50 3391 247408 1.35 250799 51 3204 249777 1.27 252981 52 3310 248260 1.32 251570 53 3403 245308 1.37 248711 54 3461 249647 1.37 253108 55 3458 246264 1.38 249722 56 3470 247187 1.38 250657 57 3726 247207 1.48 250933 58 3686 244807 1.48 248493 59 3925 243676 1.59 247601 60 3845 244349 1.55 248194 61 3800 241662 1.55 245462 62 3977 240119 1.63 244096 63 3863 238272 1.60 242135 64 3899 236455 1.62 240354 65 4421 234812 1.85 239233 66 3889 229948 1.66 233837 67 3855 224001 1.69 227856 68 4263 224215 1.87 228478 69 3625 222540 1.60 226165 70 3753 218041 1.69 221794 71 3629 217149 1.64 220778 72 3677 216355 1.67 220032 73 3482 213682 1.60 217164 74 3913 211029 1.82 214942 75 3551 209830 1.66 213381 76 3690 203301 1.78 206991 77 3836 203485 1.85 207321 78 3414 200411 1.67 203825 79 3677 196143 1.84 199820 80 3430 195067 1.73 198497 81 3287 193261 1.67 196548 82 3235 189975 1.67 193210 83 3554 191791 1.82 195345 84 3533 189329 1.83 192862 85 3324 186481 1.75 189805 86 3473 186441 1.83 189914 87 3674 184579 1.95 188253 88 4237 177386 2.33 181623 89 3383 179858 1.85 183241 90 3314 179022 1.82 182336 91 3249 175162 1.82 178411 92 3392 175951 1.89 179343 93 3394 173462 1.92 176856 94 3318 169523 1.92 172841 95 3454 168172 2.01 171626 96 3410 167178 2.00 170588 97 3395 151623 2.19 155018 98 3036 139915 2.12 142951 99 1855 91382 1.99 93237 100 2367 93319 2.47 95686 101 4257 150885 2.74 155142 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 198453 361690 35.43 560143 2 114057 381943 23.00 496000 3 67911 422315 13.85 490226 4 60062 450064 11.77 510126 5 57084 523696 9.83 580780 6 48191 570742 7.79 618933 7 36841 698433 5.01 735274 8 29641 752539 3.79 782180 9 23725 696888 3.29 720613 10 23884 676865 3.41 700749 11 30148 676855 4.26 707003 12 26205 682320 3.70 708525 13 28550 694251 3.95 722801 14 30889 709736 4.17 740625 15 27098 727928 3.59 755026 16 27201 736119 3.56 763320 17 30399 739005 3.95 769404 18 26600 767491 3.35 794091 19 26643 779982 3.30 806625 20 30526 803717 3.66 834243 21 27309 804308 3.28 831617 22 29062 806458 3.48 835520 23 31002 806338 3.70 837340 24 27238 804546 3.27 831784 25 29771 808131 3.55 837902 26 31375 818996 3.69 850371 27 27428 823612 3.22 851040 28 27297 826317 3.20 853614 29 30837 825880 3.60 856717 30 26950 818032 3.19 844982 31 26983 807544 3.23 834527 32 29663 805915 3.55 835578 33 26299 809647 3.15 835946 34 29604 814474 3.51 844078 35 30540 806735 3.65 837275 36 26971 813546 3.21 840517 37 26207 809646 3.14 835853 38 30926 812583 3.67 843509 39 26667 806983 3.20 833650 40 26715 804005 3.22 830720 41 30264 806367 3.62 836631 42 27704 810010 3.31 837714 43 28238 801437 3.40 829675 44 29222 805270 3.50 834492 45 27240 800458 3.29 827698 46 26486 800579 3.20 827065 47 28224 797618 3.42 825842 48 24879 798912 3.02 823791 49 25149 789239 3.09 814388 50 27710 786960 3.40 814670 51 24654 778688 3.07 803342 52 26014 776692 3.24 802706 53 27972 768653 3.51 796625 54 24891 771677 3.12 796568 55 25335 764446 3.21 789781 56 27622 762138 3.50 789760 57 24056 766084 3.04 790140 58 24644 759785 3.14 784429 59 27891 757547 3.55 785438 60 24098 746784 3.13 770882 61 25986 738547 3.40 764533 62 26906 728232 3.56 755138 63 23995 720532 3.22 744527 64 25103 713594 3.40 738697 65 25623 707993 3.49 733616 66 23237 699838 3.21 723075 67 23088 691776 3.23 714864 68 24692 685512 3.48 710204 69 22619 680154 3.22 702773 70 22612 674916 3.24 697528 71 24673 669007 3.56 693680 72 21991 665908 3.20 687899 73 24268 654625 3.57 678893 74 24566 650556 3.64 675122 75 21889 641455 3.30 663344 76 22783 634935 3.46 657718 77 24499 628929 3.75 653428 78 20756 623354 3.22 644110 79 21790 616938 3.41 638728 80 23920 613129 3.75 637049 81 21789 603655 3.48 625444 82 22370 597018 3.61 619388 83 23249 592908 3.77 616157 84 21545 583973 3.56 605518 85 20273 577183 3.39 597456 86 22001 570655 3.71 592656 87 20330 562369 3.49 582699 88 21556 546928 3.79 568484 89 22129 552250 3.85 574379 90 19492 549590 3.43 569082 91 19885 541739 3.54 561624 92 21268 539954 3.79 561222 93 19298 532915 3.49 552213 94 19242 527433 3.52 546675 95 21004 518161 3.90 539165 96 18465 508847 3.50 527312 97 18216 494552 3.55 512768 98 19264 460666 4.01 479930 99 11642 321623 3.49 333265 100 12138 286491 4.06 298629 101 18238 463911 3.78 482149 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 83107 110365 42.96 193472 2 73358 99366 42.47 172724 3 79330 110351 41.82 189681 4 73044 125979 36.70 199023 5 31535 162737 16.23 194272 6 19573 89280 17.98 108853 7 16700 94682 14.99 111382 8 17786 89733 16.54 107519 9 15299 76532 16.66 91831 10 17077 85412 16.66 102489 11 17935 83986 17.60 101921 12 17272 80905 17.59 98177 13 17987 77338 18.87 95325 14 18815 79785 19.08 98600 15 18268 72673 20.09 90941 16 17107 69754 19.69 86861 17 20850 75589 21.62 96439 18 19877 72310 21.56 92187 19 18988 70887 21.13 89875 20 17876 69105 20.55 86981 21 18670 67971 21.55 86641 22 18480 70695 20.72 89175 23 17303 66120 20.74 83423 24 16573 64178 20.52 80751 25 18094 66434 21.41 84528 26 17071 63447 21.20 80518 27 18159 64612 21.94 82771 28 16674 60130 21.71 76804 29 17412 63635 21.48 81047 30 16931 58995 22.30 75926 31 16080 60761 20.93 76841 32 15300 57608 20.99 72908 33 17030 57202 22.94 74232 34 16253 59807 21.37 76060 35 19584 62546 23.85 82130 36 16391 56413 22.51 72804 37 16707 57376 22.55 74083 38 15367 55480 21.69 70847 39 15683 54201 22.44 69884 40 16536 53952 23.46 70488 41 15342 53085 22.42 68427 42 15119 54451 21.73 69570 43 15209 52861 22.34 68070 44 13985 50985 21.53 64970 45 16477 54490 23.22 70967 46 13702 47990 22.21 61692 47 14039 48637 22.40 62676 48 14019 47817 22.67 61836 49 13357 50359 20.96 63716 50 12643 44829 22.00 57472 51 12642 44499 22.12 57141 52 12898 45753 21.99 58651 53 12791 44128 22.47 56919 54 12479 43594 22.25 56073 55 12413 41294 23.11 53707 56 11602 41486 21.85 53088 57 11833 41179 22.32 53012 58 11648 40882 22.17 52530 59 10791 37966 22.13 48757 60 11221 37503 23.03 48724 61 9999 37228 21.17 47227 62 10145 35740 22.11 45885 63 10930 35106 23.74 46036 64 10308 35921 22.30 46229 65 10132 33447 23.25 43579 66 10541 35037 23.13 45578 67 9821 34813 22.00 44634 68 10426 35733 22.59 46159 69 9641 33665 22.26 43306 70 9343 33091 22.02 42434 71 9592 30429 23.97 40021 72 9147 30155 23.27 39302 73 8845 30858 22.28 39703 74 8329 30089 21.68 38418 75 8622 29973 22.34 38595 76 8411 29131 22.40 37542 77 8577 29336 22.62 37913 78 8428 29275 22.35 37703 79 8056 27925 22.39 35981 80 7874 27343 22.36 35217 81 7838 27582 22.13 35420 82 7836 27171 22.38 35007 83 7892 25860 23.38 33752 84 8515 28048 23.29 36563 85 7689 26677 22.37 34366 86 7277 26256 21.70 33533 87 7545 25822 22.61 33367 88 7515 25380 22.85 32895 89 7572 25535 22.87 33107 90 7697 25469 23.21 33166 91 7144 24637 22.48 31781 92 6916 24071 22.32 30987 93 6991 24615 22.12 31606 94 7214 24112 23.03 31326 95 6952 23266 23.01 30218 96 6771 23509 22.36 30280 97 7228 24379 22.87 31607 98 6505 22155 22.70 28660 99 5857 0 100.00 5857 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 29169 137830 17.47 166999 2 29820 139538 17.61 169358 3 27996 145598 16.13 173594 4 29999 152375 16.45 182374 5 3758 280495 1.32 284253 6 2913 343804 0.84 346717 7 1747 191421 0.90 193168 8 1789 204248 0.87 206037 9 1743 171854 1.00 173597 10 1625 163282 0.99 164907 11 2327 214655 1.07 216982 12 1761 172358 1.01 174119 13 1683 171847 0.97 173530 14 1776 166496 1.06 168272 15 1688 159991 1.04 161679 16 1573 148804 1.05 150377 17 1741 159698 1.08 161439 18 2110 140241 1.48 142351 19 1777 140528 1.25 142305 20 2058 138813 1.46 140871 21 2361 132303 1.75 134664 22 1977 145810 1.34 147787 23 1941 140771 1.36 142712 24 1678 128572 1.29 130250 25 1786 130564 1.35 132350 26 1916 137523 1.37 139439 27 1811 127616 1.40 129427 28 1790 120706 1.46 122496 29 1989 130184 1.50 132173 30 1999 123313 1.60 125312 31 1802 119398 1.49 121200 32 1747 121141 1.42 122888 33 2067 140008 1.45 142075 34 1835 118540 1.52 120375 35 1947 120050 1.60 121997 36 1883 118871 1.56 120754 37 1772 111385 1.57 113157 38 1955 116654 1.65 118609 39 1847 112382 1.62 114229 40 1808 107697 1.65 109505 41 1866 103976 1.76 105842 42 1953 97784 1.96 99737 43 1983 102094 1.91 104077 44 1759 100498 1.72 102257 45 1749 91879 1.87 93628 46 1709 92426 1.82 94135 47 1907 95215 1.96 97122 48 1769 90068 1.93 91837 49 1642 92550 1.74 94192 50 1868 89771 2.04 91639 51 1811 83206 2.13 85017 52 1847 83426 2.17 85273 53 2128 91151 2.28 93279 54 1671 82183 1.99 83854 55 1640 83621 1.92 85261 56 1556 81639 1.87 83195 57 1822 77926 2.28 79748 58 1387 78728 1.73 80115 59 1240 77392 1.58 78632 60 1111 73793 1.48 74904 61 967 73001 1.31 73968 62 917 75968 1.19 76885 63 882 77355 1.13 78237 64 849 69342 1.21 70191 65 859 73795 1.15 74654 66 817 66942 1.21 67759 67 770 72769 1.05 73539 68 794 71476 1.10 72270 69 860 68508 1.24 69368 70 788 68197 1.14 68985 71 799 69401 1.14 70200 72 716 63551 1.11 64267 73 689 64088 1.06 64777 74 723 65611 1.09 66334 75 633 61615 1.02 62248 76 664 61092 1.08 61756 77 779 63737 1.21 64516 78 704 62260 1.12 62964 79 674 60291 1.11 60965 80 643 58621 1.08 59264 81 664 56713 1.16 57377 82 621 56082 1.10 56703 83 657 56888 1.14 57545 84 632 54360 1.15 54992 85 675 59950 1.11 60625 86 653 54539 1.18 55192 87 674 54659 1.22 55333 88 606 51716 1.16 52322 89 670 55369 1.20 56039 90 656 54120 1.20 54776 91 650 54140 1.19 54790 92 569 52828 1.07 53397 93 656 50474 1.28 51130 94 592 49609 1.18 50201 95 627 50636 1.22 51263 96 705 49049 1.42 49754 97 603 48271 1.23 48874 98 503 46442 1.07 46945 99 456 0 100.00 456 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 55648 197946 21.94 253594 2 47423 163576 22.48 210999 3 48859 162119 23.16 210978 4 48684 155286 23.87 203970 5 16092 304812 5.01 320904 6 16977 422442 3.86 439419 7 17339 565556 2.97 582895 8 15481 561679 2.68 577160 9 18193 526036 3.34 544229 10 16478 537828 2.97 554306 11 16206 530601 2.96 546807 12 15416 495280 3.02 510696 13 14803 514250 2.80 529053 14 15527 516739 2.92 532266 15 15122 524740 2.80 539862 16 13635 497860 2.67 511495 17 15086 500103 2.93 515189 18 14634 498701 2.85 513335 19 13007 464387 2.72 477394 20 15520 488294 3.08 503814 21 14598 456114 3.10 470712 22 15168 445369 3.29 460537 23 14759 435132 3.28 449891 24 13543 416065 3.15 429608 25 14854 413236 3.47 428090 26 13613 408660 3.22 422273 27 14069 431226 3.16 445295 28 13473 417653 3.13 431126 29 13829 410748 3.26 424577 30 14536 394568 3.55 409104 31 13330 383562 3.36 396892 32 13006 371622 3.38 384628 33 14096 365026 3.72 379122 34 12814 362915 3.41 375729 35 13680 372030 3.55 385710 36 12380 371159 3.23 383539 37 12272 362834 3.27 375106 38 13028 373303 3.37 386331 39 13288 348112 3.68 361400 40 12395 357041 3.36 369436 41 12953 341475 3.65 354428 42 12820 344703 3.59 357523 43 12357 326618 3.65 338975 44 11332 326706 3.35 338038 45 11850 322650 3.54 334500 46 11352 324374 3.38 335726 47 10872 316857 3.32 327729 48 11295 308156 3.54 319451 49 10521 308005 3.30 318526 50 10614 305205 3.36 315819 51 10828 295732 3.53 306560 52 9698 278824 3.36 288522 53 10029 280829 3.45 290858 54 9542 272317 3.39 281859 55 9079 277855 3.16 286934 56 9299 270889 3.32 280188 57 9057 273182 3.21 282239 58 8171 265430 2.99 273601 59 8637 256579 3.26 265216 60 8202 260020 3.06 268222 61 8171 248973 3.18 257144 62 7752 246600 3.05 254352 63 7460 245783 2.95 253243 64 7717 239755 3.12 247472 65 7153 240720 2.89 247873 66 7481 234142 3.10 241623 67 7081 232545 2.96 239626 68 6971 239375 2.83 246346 69 7367 232545 3.07 239912 70 7131 227842 3.03 234973 71 6743 221948 2.95 228691 72 7269 220737 3.19 228006 73 6748 216382 3.02 223130 74 6495 216617 2.91 223112 75 6719 217008 3.00 223727 76 6197 209412 2.87 215609 77 6907 207966 3.21 214873 78 6583 208784 3.06 215367 79 6337 212179 2.90 218516 80 6525 204883 3.09 211408 81 6673 203931 3.17 210604 82 6419 201167 3.09 207586 83 5983 199698 2.91 205681 84 6310 199875 3.06 206185 85 6037 194086 3.02 200123 86 5878 193554 2.95 199432 87 5820 189862 2.97 195682 88 5639 186314 2.94 191953 89 5658 184395 2.98 190053 90 5760 185621 3.01 191381 91 5378 182710 2.86 188088 92 5314 181886 2.84 187200 93 5268 179106 2.86 184374 94 4899 174407 2.73 179306 95 5259 172689 2.96 177948 96 5070 170836 2.88 175906 97 4748 170958 2.70 175706 98 4555 162544 2.73 167099 99 3052 0 100.00 3052