Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-188_S21_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-188_S21_L003_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 21488138
Paired-end alignments with a unique best hit 10978019
Pairs without alignments under any condition 6944690
Pairs that did not map uniquely 3565429
Genomic sequence context not extractable (edges of chromosomes) 56248

Cytosine Methylation

Total C's analysed 330933327
Methylated C's in CpG context 10013389
Methylated C's in CHG context 1746730
Methylated C's in CHH context 6803412
Methylated C's in Unknown context 219928
Unmethylated C's in CpG context 40180946
Unmethylated C's in CHG context 70497987
Unmethylated C's in CHH context 201690863
Unmethylated C's in Unknown context 1659459
Percentage methylation (CpG context) 19.9%
Percentage methylation (CHG context) 2.4%
Percentage methylation (CHH context) 3.3%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 5422254 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 5499517 original bottom strand