EPI-187_S20_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 9527242 lines in total Total number of methylation call strings processed: 19054484 Final Cytosine Methylation Report ================================= Total number of C's analysed: 211868934 Total methylated C's in CpG context: 8582613 Total methylated C's in CHG context: 1241231 Total methylated C's in CHH context: 5319278 Total C to T conversions in CpG context: 20778524 Total C to T conversions in CHG context: 44591913 Total C to T conversions in CHH context: 131355375 C methylated in CpG context: 29.2% C methylated in CHG context: 2.7% C methylated in CHH context: 3.9%