CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 156607 233646 40.13 390253 2 152551 261478 36.85 414029 3 143950 226545 38.85 370495 4 151126 181566 45.43 332692 5 146321 158055 48.07 304376 6 150206 133825 52.88 284031 7 168416 132890 55.90 301306 8 78909 152094 34.16 231003 9 70301 140728 33.31 211029 10 69522 136947 33.67 206469 11 72899 141145 34.06 214044 12 70654 143782 32.95 214436 13 69123 147933 31.85 217056 14 66499 148543 30.92 215042 15 65311 150466 30.27 215777 16 60583 148053 29.04 208636 17 57827 144562 28.57 202389 18 59658 147977 28.73 207635 19 58400 148672 28.20 207072 20 58639 150906 27.98 209545 21 58533 152377 27.75 210910 22 57253 149970 27.63 207223 23 57297 148945 27.78 206242 24 56943 148949 27.66 205892 25 55957 148273 27.40 204230 26 56279 146463 27.76 202742 27 56191 151471 27.06 207662 28 57790 150492 27.75 208282 29 56000 152417 26.87 208417 30 55412 151924 26.73 207336 31 56737 149083 27.57 205820 32 55725 146206 27.60 201931 33 55898 148378 27.36 204276 34 56942 147687 27.83 204629 35 55940 146201 27.67 202141 36 55412 150397 26.92 205809 37 53563 146362 26.79 199925 38 53183 147076 26.56 200259 39 55097 148418 27.07 203515 40 54740 146378 27.22 201118 41 54206 146758 26.97 200964 42 55380 148984 27.10 204364 43 54056 147588 26.81 201644 44 53758 146602 26.83 200360 45 54732 146890 27.15 201622 46 55138 148356 27.10 203494 47 54673 145433 27.32 200106 48 54057 146881 26.90 200938 49 56209 145601 27.85 201810 50 54160 147667 26.83 201827 51 54702 147389 27.07 202091 52 55222 151701 26.69 206923 53 53633 144827 27.02 198460 54 52908 144697 26.77 197605 55 52150 141874 26.88 194024 56 52668 141304 27.15 193972 57 53702 143054 27.29 196756 58 54486 143590 27.51 198076 59 54997 141643 27.97 196640 60 53872 143395 27.31 197267 61 54919 140808 28.06 195727 62 53173 142313 27.20 195486 63 52547 141074 27.14 193621 64 52383 140081 27.22 192464 65 52387 138680 27.42 191067 66 53273 139233 27.67 192506 67 52808 135792 28.00 188600 68 51199 135801 27.38 187000 69 51070 134146 27.57 185216 70 50583 134300 27.36 184883 71 49350 131484 27.29 180834 72 49083 131752 27.14 180835 73 48829 130094 27.29 178923 74 48265 128873 27.25 177138 75 47237 128974 26.81 176211 76 46960 127509 26.92 174469 77 48038 126457 27.53 174495 78 47897 127300 27.34 175197 79 46276 124711 27.06 170987 80 45576 124071 26.87 169647 81 45503 122486 27.09 167989 82 44581 121474 26.85 166055 83 45251 122855 26.92 168106 84 45030 123857 26.66 168887 85 44382 120487 26.92 164869 86 43238 118948 26.66 162186 87 42364 116841 26.61 159205 88 42253 114860 26.89 157113 89 41908 116053 26.53 157961 90 42068 116339 26.56 158407 91 41336 113085 26.77 154421 92 40312 113362 26.23 153674 93 40109 113221 26.16 153330 94 40454 111567 26.61 152021 95 39604 110257 26.43 149861 96 39773 112058 26.20 151831 97 38339 107510 26.29 145849 98 35725 101134 26.10 136859 99 28070 80142 25.94 108212 100 37093 100897 26.88 137990 101 34152 100263 25.41 134415 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 221219 295938 42.78 517157 2 126915 282265 31.02 409180 3 54758 275158 16.60 329916 4 30484 278763 9.86 309247 5 20548 255431 7.45 275979 6 18643 245185 7.07 263828 7 14136 306087 4.41 320223 8 6930 333023 2.04 339953 9 5551 317330 1.72 322881 10 5414 304526 1.75 309940 11 5735 310560 1.81 316295 12 5539 313197 1.74 318736 13 5184 301416 1.69 306600 14 4865 303345 1.58 308210 15 5123 311012 1.62 316135 16 4379 311413 1.39 315792 17 4886 308518 1.56 313404 18 4549 307521 1.46 312070 19 4006 308626 1.28 312632 20 4325 324688 1.31 329013 21 4085 328650 1.23 332735 22 4255 323242 1.30 327497 23 4489 327457 1.35 331946 24 4151 329842 1.24 333993 25 4542 318936 1.40 323478 26 5541 324268 1.68 329809 27 4095 328119 1.23 332214 28 3847 327750 1.16 331597 29 4960 331446 1.47 336406 30 3999 333794 1.18 337793 31 3976 324436 1.21 328412 32 4375 328314 1.32 332689 33 3997 329528 1.20 333525 34 4138 324603 1.26 328741 35 4870 327745 1.46 332615 36 4144 328242 1.25 332386 37 4039 318689 1.25 322728 38 4706 325955 1.42 330661 39 4124 322725 1.26 326849 40 4137 323542 1.26 327679 41 4110 324151 1.25 328261 42 3847 324303 1.17 328150 43 3844 319550 1.19 323394 44 3981 325296 1.21 329277 45 3975 323543 1.21 327518 46 4087 320777 1.26 324864 47 4371 321618 1.34 325989 48 3901 328988 1.17 332889 49 4033 319194 1.25 323227 50 4343 319894 1.34 324237 51 4042 324521 1.23 328563 52 4162 324232 1.27 328394 53 4199 319693 1.30 323892 54 4520 324867 1.37 329387 55 4279 320583 1.32 324862 56 4324 322937 1.32 327261 57 4340 321880 1.33 326220 58 4535 318707 1.40 323242 59 4795 321036 1.47 325831 60 4577 322517 1.40 327094 61 4658 319068 1.44 323726 62 4686 318036 1.45 322722 63 4846 315637 1.51 320483 64 4770 313968 1.50 318738 65 5798 312056 1.82 317854 66 4790 307951 1.53 312741 67 4689 300894 1.53 305583 68 5454 302623 1.77 308077 69 4612 302022 1.50 306634 70 4352 294298 1.46 298650 71 4543 296067 1.51 300610 72 4475 295303 1.49 299778 73 4521 291021 1.53 295542 74 4868 290670 1.65 295538 75 4281 291164 1.45 295445 76 4684 280496 1.64 285180 77 5149 284598 1.78 289747 78 4425 279437 1.56 283862 79 4528 271819 1.64 276347 80 4253 274278 1.53 278531 81 4299 270877 1.56 275176 82 4223 267065 1.56 271288 83 4444 271268 1.61 275712 84 4694 269775 1.71 274469 85 4253 263856 1.59 268109 86 4532 264993 1.68 269525 87 4767 263733 1.78 268500 88 5310 254272 2.05 259582 89 4461 258332 1.70 262793 90 4215 257483 1.61 261698 91 4431 252551 1.72 256982 92 4563 253060 1.77 257623 93 4734 250909 1.85 255643 94 4429 245574 1.77 250003 95 4626 245376 1.85 250002 96 4541 242308 1.84 246849 97 4476 221652 1.98 226128 98 4116 203950 1.98 208066 99 2378 131873 1.77 134251 100 3156 132981 2.32 136137 101 5819 220713 2.57 226532 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 253827 395008 39.12 648835 2 146867 428926 25.51 575793 3 87059 499527 14.84 586586 4 80492 523459 13.33 603951 5 77000 611180 11.19 688180 6 64511 660366 8.90 724877 7 52583 837486 5.91 890069 8 39939 909818 4.21 949757 9 30533 837674 3.52 868207 10 30068 818293 3.54 848361 11 38191 823806 4.43 861997 12 32333 833896 3.73 866229 13 36511 851276 4.11 887787 14 39434 873314 4.32 912748 15 33955 896219 3.65 930174 16 33176 908007 3.52 941183 17 38105 913420 4.00 951525 18 31937 946920 3.26 978857 19 31925 962544 3.21 994469 20 37945 996183 3.67 1034128 21 32182 993934 3.14 1026116 22 35877 995777 3.48 1031654 23 38303 992254 3.72 1030557 24 32820 994102 3.20 1026922 25 36885 995331 3.57 1032216 26 38566 1008613 3.68 1047179 27 33264 1012957 3.18 1046221 28 32470 1018452 3.09 1050922 29 38335 1015553 3.64 1053888 30 32811 1005560 3.16 1038371 31 33715 992394 3.29 1026109 32 36986 995425 3.58 1032411 33 32688 1000735 3.16 1033423 34 37371 1007064 3.58 1044435 35 38637 999795 3.72 1038432 36 32759 1007442 3.15 1040201 37 32388 1001260 3.13 1033648 38 38630 1008099 3.69 1046729 39 32469 1001793 3.14 1034262 40 33199 1000041 3.21 1033240 41 38711 1004093 3.71 1042804 42 34027 1012551 3.25 1046578 43 36804 1001053 3.55 1037857 44 37442 1007812 3.58 1045254 45 34534 998114 3.34 1032648 46 33747 1001292 3.26 1035039 47 36799 998274 3.56 1035073 48 31237 998204 3.03 1029441 49 31879 987806 3.13 1019685 50 36232 986620 3.54 1022852 51 30832 979249 3.05 1010081 52 34243 974674 3.39 1008917 53 36499 970051 3.63 1006550 54 31698 971691 3.16 1003389 55 32444 967194 3.25 999638 56 36570 964215 3.65 1000785 57 30833 977249 3.06 1008082 58 31782 970407 3.17 1002189 59 36408 971700 3.61 1008108 60 30844 959023 3.12 989867 61 33940 952090 3.44 986030 62 35555 942135 3.64 977690 63 30834 935516 3.19 966350 64 33430 928697 3.47 962127 65 34185 923359 3.57 957544 66 30316 917138 3.20 947454 67 30400 910312 3.23 940712 68 33247 905231 3.54 938478 69 29484 899501 3.17 928985 70 30144 892220 3.27 922364 71 33038 889863 3.58 922901 72 29349 886374 3.21 915723 73 32713 874151 3.61 906864 74 33516 873167 3.70 906683 75 29389 863285 3.29 892674 76 30216 856012 3.41 886228 77 33568 849922 3.80 883490 78 27634 844278 3.17 871912 79 29471 837017 3.40 866488 80 32464 834281 3.75 866745 81 29266 823006 3.43 852272 82 31021 815476 3.66 846497 83 31989 815101 3.78 847090 84 29567 804705 3.54 834272 85 28027 793441 3.41 821468 86 30580 786605 3.74 817185 87 28045 777828 3.48 805873 88 29571 758330 3.75 787901 89 30462 768586 3.81 799048 90 26491 765716 3.34 792207 91 27795 755897 3.55 783692 92 29618 754602 3.78 784220 93 26258 747220 3.39 773478 94 26543 738495 3.47 765038 95 29040 729109 3.83 758149 96 24839 715911 3.35 740750 97 24729 697389 3.42 722118 98 26715 649603 3.95 676318 99 15611 453226 3.33 468837 100 17310 402684 4.12 419994 101 25661 657246 3.76 682907 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 137315 145645 48.53 282960 2 117919 125048 48.53 242967 3 125309 139275 47.36 264584 4 113624 155409 42.23 269033 5 51287 200711 20.35 251998 6 31790 111051 22.26 142841 7 27734 118598 18.95 146332 8 28903 110771 20.69 139674 9 25290 95336 20.97 120626 10 27366 105751 20.56 133117 11 29583 103696 22.20 133279 12 28408 99668 22.18 128076 13 29235 95916 23.36 125151 14 30312 98802 23.48 129114 15 29476 89719 24.73 119195 16 27775 86149 24.38 113924 17 33552 93957 26.31 127509 18 32145 89822 26.36 121967 19 30812 88294 25.87 119106 20 28681 85454 25.13 114135 21 29460 83262 26.14 112722 22 29876 87442 25.47 117318 23 28267 82733 25.47 111000 24 27074 79948 25.30 107022 25 29645 83038 26.31 112683 26 27404 80126 25.48 107530 27 29000 80024 26.60 109024 28 26906 76312 26.07 103218 29 27871 79688 25.91 107559 30 26874 74473 26.52 101347 31 25713 77004 25.03 102717 32 24941 72979 25.47 97920 33 28324 72557 28.08 100881 34 26854 76501 25.98 103355 35 32652 81219 28.67 113871 36 27090 72881 27.10 99971 37 28228 75422 27.23 103650 38 25058 71535 25.94 96593 39 26079 69991 27.15 96070 40 28310 70415 28.68 98725 41 24720 69034 26.37 93754 42 25068 71026 26.09 96094 43 24946 69634 26.38 94580 44 23255 67386 25.66 90641 45 29228 73126 28.56 102354 46 23215 63699 26.71 86914 47 23117 64722 26.32 87839 48 23950 63660 27.34 87610 49 22645 65901 25.57 88546 50 21628 61511 26.01 83139 51 21858 59852 26.75 81710 52 22201 61659 26.47 83860 53 22317 59826 27.17 82143 54 21435 59691 26.42 81126 55 22027 57120 27.83 79147 56 20464 56480 26.60 76944 57 21458 57096 27.32 78554 58 20610 57308 26.45 77918 59 19463 52853 26.91 72316 60 20105 53833 27.19 73938 61 17975 52949 25.34 70924 62 18603 50606 26.88 69209 63 19806 50587 28.14 70393 64 18559 50872 26.73 69431 65 18180 47913 27.51 66093 66 19273 50046 27.80 69319 67 17964 50818 26.12 68782 68 19675 51737 27.55 71412 69 17801 48745 26.75 66546 70 17096 47970 26.27 65066 71 17586 44541 28.31 62127 72 16729 43759 27.66 60488 73 16560 45218 26.81 61778 74 15345 44152 25.79 59497 75 15418 43729 26.07 59147 76 15778 42375 27.13 58153 77 15277 42633 26.38 57910 78 15239 43089 26.13 58328 79 14891 40534 26.87 55425 80 14485 39903 26.63 54388 81 14561 40397 26.49 54958 82 14499 40268 26.47 54767 83 14733 38206 27.83 52939 84 16168 41419 28.08 57587 85 14044 39374 26.29 53418 86 13628 38545 26.12 52173 87 13620 37992 26.39 51612 88 13657 37494 26.70 51151 89 14385 37775 27.58 52160 90 14051 37609 27.20 51660 91 13227 36369 26.67 49596 92 12737 35758 26.26 48495 93 12508 35772 25.91 48280 94 13506 35621 27.49 49127 95 12973 35041 27.02 48014 96 12618 34680 26.68 47298 97 13988 36434 27.74 50422 98 12163 32892 27.00 45055 99 10954 0 100.00 10954 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 38929 183657 17.49 222586 2 38494 185266 17.20 223760 3 35237 189714 15.66 224951 4 37948 204846 15.63 242794 5 5136 371542 1.36 376678 6 3839 456793 0.83 460632 7 2588 258701 0.99 261289 8 2668 279875 0.94 282543 9 2262 230034 0.97 232296 10 2316 221781 1.03 224097 11 3442 300271 1.13 303713 12 2515 235976 1.05 238491 13 2474 234415 1.04 236889 14 2460 223096 1.09 225556 15 2404 218944 1.09 221348 16 2267 202596 1.11 204863 17 2576 217799 1.17 220375 18 2992 191933 1.53 194925 19 2303 192413 1.18 194716 20 2359 189709 1.23 192068 21 3161 179453 1.73 182614 22 2507 199791 1.24 202298 23 2467 198320 1.23 200787 24 2172 176009 1.22 178181 25 2260 180181 1.24 182441 26 2388 189696 1.24 192084 27 2310 176870 1.29 179180 28 2114 168362 1.24 170476 29 2358 182969 1.27 185327 30 2326 172132 1.33 174458 31 2153 166422 1.28 168575 32 2119 170374 1.23 172493 33 2403 199442 1.19 201845 34 2126 164849 1.27 166975 35 2283 172977 1.30 175260 36 2141 169621 1.25 171762 37 2055 158355 1.28 160410 38 2398 169877 1.39 172275 39 2287 158185 1.43 160472 40 2088 155244 1.33 157332 41 2320 150842 1.51 153162 42 2294 141537 1.59 143831 43 2433 148619 1.61 151052 44 2166 145961 1.46 148127 45 2057 134554 1.51 136611 46 2109 136353 1.52 138462 47 2248 139336 1.59 141584 48 2211 132377 1.64 134588 49 2236 139381 1.58 141617 50 2288 133602 1.68 135890 51 2171 125815 1.70 127986 52 2246 125099 1.76 127345 53 2561 139263 1.81 141824 54 2172 126221 1.69 128393 55 2197 127555 1.69 129752 56 2052 124348 1.62 126400 57 2394 119739 1.96 122133 58 1939 121022 1.58 122961 59 1830 120919 1.49 122749 60 1814 115600 1.54 117414 61 1407 115289 1.21 116696 62 1540 120981 1.26 122521 63 1497 121004 1.22 122501 64 1252 109247 1.13 110499 65 1438 116337 1.22 117775 66 1245 105197 1.17 106442 67 1386 115584 1.18 116970 68 1261 112336 1.11 113597 69 1307 108070 1.19 109377 70 1279 108385 1.17 109664 71 1249 111059 1.11 112308 72 1145 101370 1.12 102515 73 1199 102054 1.16 103253 74 1219 105449 1.14 106668 75 1175 100154 1.16 101329 76 1109 96896 1.13 98005 77 1223 103983 1.16 105206 78 1180 98045 1.19 99225 79 1098 97513 1.11 98611 80 1119 94048 1.18 95167 81 1177 91052 1.28 92229 82 1086 89598 1.20 90684 83 1147 91163 1.24 92310 84 1050 87157 1.19 88207 85 1102 97324 1.12 98426 86 1078 88612 1.20 89690 87 1091 87995 1.22 89086 88 1048 83967 1.23 85015 89 1117 89320 1.24 90437 90 1118 87522 1.26 88640 91 1104 90222 1.21 91326 92 983 85320 1.14 86303 93 1033 82954 1.23 83987 94 958 80419 1.18 81377 95 1090 82651 1.30 83741 96 1186 77929 1.50 79115 97 1001 78470 1.26 79471 98 905 77025 1.16 77930 99 793 0 100.00 793 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 66137 240654 21.56 306791 2 56982 196251 22.50 253233 3 57750 200219 22.39 257969 4 57751 195115 22.84 252866 5 19612 395467 4.72 415079 6 19955 549317 3.51 569272 7 20934 743271 2.74 764205 8 19226 732139 2.56 751365 9 21579 690115 3.03 711694 10 19780 704748 2.73 724528 11 19824 696720 2.77 716544 12 19085 651853 2.84 670938 13 18292 674624 2.64 692916 14 19013 678182 2.73 697195 15 18083 700556 2.52 718639 16 17021 669556 2.48 686577 17 18416 670896 2.67 689312 18 17800 668892 2.59 686692 19 15980 619777 2.51 635757 20 18632 658215 2.75 676847 21 17337 613382 2.75 630719 22 18200 597445 2.96 615645 23 17786 589325 2.93 607111 24 16319 564557 2.81 580876 25 17911 561606 3.09 579517 26 16728 558207 2.91 574935 27 17453 594174 2.85 611627 28 16590 569519 2.83 586109 29 16912 560335 2.93 577247 30 17788 540944 3.18 558732 31 16593 528002 3.05 544595 32 15819 511321 3.00 527140 33 17424 505635 3.33 523059 34 16210 506063 3.10 522273 35 16911 520442 3.15 537353 36 15617 519154 2.92 534771 37 15461 508746 2.95 524207 38 16637 533299 3.03 549936 39 16291 490807 3.21 507098 40 16076 514241 3.03 530317 41 16272 484469 3.25 500741 42 16115 494752 3.15 510867 43 15967 467415 3.30 483382 44 14397 465158 3.00 479555 45 15399 463807 3.21 479206 46 14691 467868 3.04 482559 47 14205 458238 3.01 472443 48 14779 448094 3.19 462873 49 14261 455786 3.03 470047 50 14226 446057 3.09 460283 51 14565 434537 3.24 449102 52 13343 411535 3.14 424878 53 13246 413133 3.11 426379 54 12598 403444 3.03 416042 55 12523 415990 2.92 428513 56 12684 403536 3.05 416220 57 12454 412499 2.93 424953 58 11743 400337 2.85 412080 59 12194 384458 3.07 396652 60 11808 392695 2.92 404503 61 11910 375667 3.07 387577 62 11211 371966 2.93 383177 63 10999 373566 2.86 384565 64 11269 360324 3.03 371593 65 10485 367002 2.78 377487 66 10699 354937 2.93 365636 67 10107 355274 2.77 365381 68 10457 368231 2.76 378688 69 10760 357505 2.92 368265 70 10273 345001 2.89 355274 71 9994 339792 2.86 349786 72 10489 338965 3.00 349454 73 10054 333462 2.93 343516 74 9603 333998 2.79 343601 75 9825 333465 2.86 343290 76 9147 321493 2.77 330640 77 9953 320239 3.01 330192 78 10043 323010 3.02 333053 79 9450 329209 2.79 338659 80 9676 317419 2.96 327095 81 9835 318504 3.00 328339 82 9592 311462 2.99 321054 83 9041 309737 2.84 318778 84 9276 308208 2.92 317484 85 8930 302363 2.87 311293 86 8823 301963 2.84 310786 87 8746 297775 2.85 306521 88 8427 287737 2.85 296164 89 8482 286040 2.88 294522 90 8538 288095 2.88 296633 91 8306 284494 2.84 292800 92 7805 282123 2.69 289928 93 7825 278038 2.74 285863 94 7604 274448 2.70 282052 95 7746 269207 2.80 276953 96 7615 266255 2.78 273870 97 7187 266516 2.63 273703 98 6591 254406 2.53 260997 99 4778 0 100.00 4778