Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-187_S20_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-187_S20_L003_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 22734395
Paired-end alignments with a unique best hit 13573422
Pairs without alignments under any condition 5092561
Pairs that did not map uniquely 4068412
Genomic sequence context not extractable (edges of chromosomes) 62145

Cytosine Methylation

Total C's analysed 425504629
Methylated C's in CpG context 15084090
Methylated C's in CHG context 2281665
Methylated C's in CHH context 8712838
Methylated C's in Unknown context 265203
Unmethylated C's in CpG context 48860840
Unmethylated C's in CHG context 92161675
Unmethylated C's in CHH context 258403521
Unmethylated C's in Unknown context 1997501
Percentage methylation (CpG context) 23.6%
Percentage methylation (CHG context) 2.4%
Percentage methylation (CHH context) 3.3%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 6664215 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 6847062 original bottom strand