EPI-185_S19_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 3923037 lines in total Total number of methylation call strings processed: 7846074 Final Cytosine Methylation Report ================================= Total number of C's analysed: 88246998 Total methylated C's in CpG context: 2920391 Total methylated C's in CHG context: 659983 Total methylated C's in CHH context: 6679533 Total C to T conversions in CpG context: 9078127 Total C to T conversions in CHG context: 17480450 Total C to T conversions in CHH context: 51428514 C methylated in CpG context: 24.3% C methylated in CHG context: 3.6% C methylated in CHH context: 11.5%