CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 53393 92284 36.65 145677 2 49599 101087 32.92 150686 3 48603 93087 34.30 141690 4 50267 79524 38.73 129791 5 50522 71184 41.51 121706 6 48531 60798 44.39 109329 7 55796 63091 46.93 118887 8 26173 70074 27.19 96247 9 23047 65647 25.98 88694 10 23491 64386 26.73 87877 11 24990 65410 27.64 90400 12 23909 63968 27.21 87877 13 23822 65547 26.66 89369 14 23053 66643 25.70 89696 15 22456 66565 25.23 89021 16 20814 66454 23.85 87268 17 20105 64525 23.76 84630 18 21599 66315 24.57 87914 19 20668 64911 24.15 85579 20 20769 65754 24.00 86523 21 20892 67268 23.70 88160 22 20637 66141 23.78 86778 23 20318 65791 23.60 86109 24 20298 66362 23.42 86660 25 19789 65666 23.16 85455 26 20353 65482 23.71 85835 27 20097 66778 23.13 86875 28 20523 67314 23.36 87837 29 20067 66614 23.15 86681 30 19501 67318 22.46 86819 31 19893 66250 23.09 86143 32 19612 65424 23.06 85036 33 20080 66756 23.12 86836 34 20393 66302 23.52 86695 35 19923 66964 22.93 86887 36 19403 67690 22.28 87093 37 19155 65480 22.63 84635 38 18967 66199 22.27 85166 39 19533 65975 22.84 85508 40 19000 65896 22.38 84896 41 19666 65400 23.12 85066 42 19983 66994 22.98 86977 43 19097 66462 22.32 85559 44 19177 65114 22.75 84291 45 19284 65935 22.63 85219 46 19616 66331 22.82 85947 47 19387 65486 22.84 84873 48 19179 65807 22.57 84986 49 20003 65750 23.33 85753 50 19080 65893 22.45 84973 51 19244 66386 22.47 85630 52 19398 66805 22.50 86203 53 19149 64457 22.90 83606 54 18557 64861 22.25 83418 55 19000 63965 22.90 82965 56 18692 63194 22.83 81886 57 18969 63979 22.87 82948 58 19397 63947 23.27 83344 59 19385 63051 23.52 82436 60 19164 64021 23.04 83185 61 19140 62254 23.52 81394 62 18725 63510 22.77 82235 63 18742 63094 22.90 81836 64 18555 62386 22.92 80941 65 18751 61803 23.28 80554 66 19389 61603 23.94 80992 67 18438 60296 23.42 78734 68 17987 60510 22.91 78497 69 17936 59556 23.15 77492 70 17554 59416 22.81 76970 71 17480 58029 23.15 75509 72 17249 58440 22.79 75689 73 17101 57414 22.95 74515 74 17099 57465 22.93 74564 75 16369 57505 22.16 73874 76 16438 57208 22.32 73646 77 16752 56210 22.96 72962 78 16706 56455 22.83 73161 79 16149 55608 22.51 71757 80 15974 55094 22.48 71068 81 15817 54653 22.45 70470 82 15525 54006 22.33 69531 83 15824 54518 22.50 70342 84 15911 54613 22.56 70524 85 15460 52720 22.68 68180 86 14773 52570 21.94 67343 87 14699 51991 22.04 66690 88 14606 50832 22.32 65438 89 14269 50745 21.95 65014 90 14019 51526 21.39 65545 91 14258 50448 22.04 64706 92 13826 49722 21.76 63548 93 13996 49512 22.04 63508 94 13759 48835 21.98 62594 95 13364 48799 21.50 62163 96 13488 48803 21.65 62291 97 12989 46700 21.76 59689 98 12187 44480 21.51 56667 99 9642 35369 21.42 45011 100 12267 44427 21.64 56694 101 11889 44301 21.16 56190 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 72009 121876 37.14 193885 2 43403 115247 27.36 158650 3 23001 110629 17.21 133630 4 15833 113823 12.21 129656 5 11158 102742 9.80 113900 6 11738 98652 10.63 110390 7 6189 124581 4.73 130770 8 4008 134872 2.89 138880 9 2985 129928 2.25 132913 10 3091 124736 2.42 127827 11 3665 123242 2.89 126907 12 3240 123933 2.55 127173 13 3105 122933 2.46 126038 14 3381 123541 2.66 126922 15 3288 126038 2.54 129326 16 2988 124319 2.35 127307 17 4362 123446 3.41 127808 18 2979 122601 2.37 125580 19 2743 122584 2.19 125327 20 3097 129914 2.33 133011 21 2926 130688 2.19 133614 22 3232 128606 2.45 131838 23 3247 130089 2.44 133336 24 3047 131942 2.26 134989 25 3257 127732 2.49 130989 26 4917 129590 3.66 134507 27 2856 131654 2.12 134510 28 2788 132091 2.07 134879 29 4037 132651 2.95 136688 30 2504 131883 1.86 134387 31 2720 130140 2.05 132860 32 2814 131017 2.10 133831 33 2941 132043 2.18 134984 34 2894 129773 2.18 132667 35 4137 130631 3.07 134768 36 3002 131758 2.23 134760 37 2767 127600 2.12 130367 38 3788 129812 2.84 133600 39 2663 129479 2.02 132142 40 2801 129297 2.12 132098 41 2739 130275 2.06 133014 42 2606 130479 1.96 133085 43 2585 127284 1.99 129869 44 2644 129515 2.00 132159 45 2672 129237 2.03 131909 46 2810 128618 2.14 131428 47 3198 129229 2.41 132427 48 2536 132567 1.88 135103 49 2921 127620 2.24 130541 50 3281 128468 2.49 131749 51 2825 129736 2.13 132561 52 2873 129876 2.16 132749 53 2961 128219 2.26 131180 54 3398 130984 2.53 134382 55 3087 128030 2.35 131117 56 3166 129231 2.39 132397 57 3024 129574 2.28 132598 58 3001 128383 2.28 131384 59 3202 129166 2.42 132368 60 2885 130064 2.17 132949 61 3088 128180 2.35 131268 62 3349 126948 2.57 130297 63 3510 126208 2.71 129718 64 3397 125084 2.64 128481 65 4625 124897 3.57 129522 66 3203 122915 2.54 126118 67 3382 118935 2.76 122317 68 4044 121161 3.23 125205 69 2799 119889 2.28 122688 70 2822 117258 2.35 120080 71 2831 117863 2.35 120694 72 3045 117235 2.53 120280 73 3014 116155 2.53 119169 74 3678 115208 3.09 118886 75 2838 115839 2.39 118677 76 3026 111414 2.64 114440 77 3886 112314 3.34 116200 78 2721 110166 2.41 112887 79 2997 107725 2.71 110722 80 2896 108192 2.61 111088 81 2656 107566 2.41 110222 82 2655 104990 2.47 107645 83 2953 107089 2.68 110042 84 2765 106058 2.54 108823 85 2818 103567 2.65 106385 86 3104 104241 2.89 107345 87 2713 103639 2.55 106352 88 3019 99590 2.94 102609 89 3030 100505 2.93 103535 90 2545 100829 2.46 103374 91 2817 98281 2.79 101098 92 2812 98768 2.77 101580 93 3094 98210 3.05 101304 94 2821 95939 2.86 98760 95 3123 95439 3.17 98562 96 2986 94474 3.06 97460 97 3035 85921 3.41 88956 98 2986 79640 3.61 82626 99 1436 52015 2.69 53451 100 2251 52880 4.08 55131 101 3810 84877 4.30 88687 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 123985 167980 42.47 291965 2 104206 178509 36.86 282715 3 78248 193185 28.83 271433 4 78364 205747 27.58 284111 5 78655 236390 24.97 315045 6 67682 262476 20.50 330158 7 46216 333971 12.16 380187 8 49053 365906 11.82 414959 9 37100 337687 9.90 374787 10 37579 327111 10.30 364690 11 51894 329299 13.61 381193 12 42196 335223 11.18 377419 13 47293 345415 12.04 392708 14 54340 352722 13.35 407062 15 44014 360363 10.88 404377 16 45197 363815 11.05 409012 17 53888 366438 12.82 420326 18 43010 382337 10.11 425347 19 43234 386822 10.05 430056 20 52589 398715 11.65 451304 21 44226 398351 9.99 442577 22 49370 395809 11.09 445179 23 53927 395515 12.00 449442 24 44889 398191 10.13 443080 25 49670 398071 11.09 447741 26 54366 405435 11.82 459801 27 44802 406116 9.94 450918 28 45434 408788 10.00 454222 29 53693 408223 11.62 461916 30 44537 406070 9.88 450607 31 46565 401432 10.39 447997 32 50795 399881 11.27 450676 33 44830 402773 10.02 447603 34 52580 405774 11.47 458354 35 53903 402666 11.81 456569 36 44510 407678 9.84 452188 37 44621 403847 9.95 448468 38 54755 407754 11.84 462509 39 44871 406404 9.94 451275 40 45449 402025 10.16 447474 41 54378 404463 11.85 458841 42 46993 405864 10.38 452857 43 51359 402157 11.32 453516 44 52589 404897 11.50 457486 45 48125 400651 10.72 448776 46 46732 403499 10.38 450231 47 51279 403462 11.28 454741 48 42431 402622 9.53 445053 49 44066 397261 9.98 441327 50 51089 398101 11.37 449190 51 42944 393053 9.85 435997 52 47508 392667 10.79 440175 53 51583 389855 11.69 441438 54 43541 390827 10.02 434368 55 45476 386782 10.52 432258 56 51684 388476 11.74 440160 57 42230 391406 9.74 433636 58 44194 389216 10.20 433410 59 51856 388421 11.78 440277 60 41890 385030 9.81 426920 61 47145 380173 11.03 427318 62 50119 375915 11.76 426034 63 41802 373905 10.06 415707 64 45852 371021 11.00 416873 65 48092 367528 11.57 415620 66 41522 365455 10.20 406977 67 41729 360767 10.37 402496 68 46847 360613 11.50 407460 69 40379 358471 10.12 398850 70 41365 354729 10.44 396094 71 47815 355382 11.86 403197 72 40692 353296 10.33 393988 73 45781 347182 11.65 392963 74 47218 345651 12.02 392869 75 40408 341494 10.58 381902 76 41098 337798 10.85 378896 77 47149 335513 12.32 382662 78 37904 334370 10.18 372274 79 39960 329506 10.82 369466 80 45762 330706 12.16 376468 81 40477 324017 11.10 364494 82 43247 322079 11.84 365326 83 45811 320895 12.49 366706 84 40455 317520 11.30 357975 85 38989 312422 11.09 351411 86 42762 308971 12.16 351733 87 36448 303877 10.71 340325 88 37184 296970 11.13 334154 89 43066 299835 12.56 342901 90 36383 298317 10.87 334700 91 38266 295207 11.47 333473 92 40983 294603 12.21 335586 93 35967 290314 11.02 326281 94 36294 288527 11.17 324821 95 40706 283264 12.56 323970 96 33854 278214 10.85 312068 97 33606 270692 11.04 304298 98 37032 253602 12.74 290634 99 20167 178164 10.17 198331 100 22858 158705 12.59 181563 101 34682 253165 12.05 287847 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 43262 58131 42.67 101393 2 38482 52684 42.21 91166 3 41101 57844 41.54 98945 4 38547 66302 36.76 104849 5 16627 86568 16.11 103195 6 10024 46596 17.70 56620 7 8951 50557 15.04 59508 8 9418 48110 16.37 57528 9 8251 41100 16.72 49351 10 9297 45224 17.05 54521 11 9620 44690 17.71 54310 12 9325 43781 17.56 53106 13 9479 41606 18.56 51085 14 10231 43145 19.17 53376 15 9816 38576 20.28 48392 16 9039 37727 19.33 46766 17 11200 39691 22.01 50891 18 10288 38184 21.22 48472 19 10021 37520 21.08 47541 20 9299 36788 20.18 46087 21 9984 35803 21.81 45787 22 9891 37837 20.72 47728 23 9193 35344 20.64 44537 24 9045 35102 20.49 44147 25 9728 35508 21.50 45236 26 9245 34054 21.35 43299 27 10007 34651 22.41 44658 28 8999 31969 21.97 40968 29 9184 34177 21.18 43361 30 8998 32127 21.88 41125 31 8656 33755 20.41 42411 32 8364 31514 20.97 39878 33 9239 31304 22.79 40543 34 9033 32853 21.57 41886 35 10355 33493 23.62 43848 36 8823 31174 22.06 39997 37 8994 31616 22.15 40610 38 8245 31611 20.69 39856 39 8496 29780 22.20 38276 40 9163 29944 23.43 39107 41 8284 30075 21.60 38359 42 8282 30284 21.47 38566 43 8318 29699 21.88 38017 44 7461 28764 20.60 36225 45 8930 30638 22.57 39568 46 7542 27051 21.80 34593 47 7698 28199 21.44 35897 48 7786 27687 21.95 35473 49 7470 29797 20.04 37267 50 7025 26039 21.25 33064 51 7108 25839 21.57 32947 52 7020 26917 20.69 33937 53 7321 26006 21.97 33327 54 6982 26176 21.06 33158 55 7207 23960 23.12 31167 56 6465 24135 21.13 30600 57 6840 23978 22.19 30818 58 6393 24694 20.56 31087 59 6315 22644 21.81 28959 60 6458 22320 22.44 28778 61 5830 22498 20.58 28328 62 5911 20565 22.33 26476 63 6101 20894 22.60 26995 64 5858 21192 21.66 27050 65 5772 19500 22.84 25272 66 6015 20849 22.39 26864 67 5620 21129 21.01 26749 68 6008 21332 21.98 27340 69 5477 20270 21.27 25747 70 5371 19490 21.60 24861 71 5444 17797 23.42 23241 72 5169 17703 22.60 22872 73 5078 18205 21.81 23283 74 4849 18047 21.18 22896 75 4861 18249 21.03 23110 76 4868 17212 22.05 22080 77 4819 17626 21.47 22445 78 4780 17507 21.45 22287 79 4589 16088 22.19 20677 80 4479 15962 21.91 20441 81 4515 16290 21.70 20805 82 4568 16260 21.93 20828 83 4561 14937 23.39 19498 84 4761 16576 22.31 21337 85 4333 16020 21.29 20353 86 4312 15457 21.81 19769 87 4334 15211 22.17 19545 88 4358 15240 22.24 19598 89 4364 15167 22.34 19531 90 4330 15198 22.17 19528 91 4101 14657 21.86 18758 92 3957 14484 21.46 18441 93 3924 14553 21.24 18477 94 4258 14437 22.78 18695 95 4038 13804 22.63 17842 96 3971 14044 22.04 18015 97 4219 14629 22.38 18848 98 3806 13518 21.97 17324 99 3387 0 100.00 3387 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 15888 70822 18.32 86710 2 16856 74683 18.41 91539 3 16220 74833 17.81 91053 4 17038 79299 17.69 96337 5 3312 145695 2.22 149007 6 2408 178481 1.33 180889 7 1603 99162 1.59 100765 8 1657 107599 1.52 109256 9 1707 90827 1.84 92534 10 1717 86404 1.95 88121 11 2338 111215 2.06 113553 12 1808 90292 1.96 92100 13 1675 89985 1.83 91660 14 1755 87553 1.97 89308 15 1759 84929 2.03 86688 16 1597 79311 1.97 80908 17 1698 84391 1.97 86089 18 2566 74039 3.35 76605 19 1561 73050 2.09 74611 20 1655 73877 2.19 75532 21 2650 69581 3.67 72231 22 1619 77214 2.05 78833 23 1558 74696 2.04 76254 24 1394 67791 2.01 69185 25 1511 69098 2.14 70609 26 1636 74519 2.15 76155 27 1514 67226 2.20 68740 28 1521 64559 2.30 66080 29 1554 70462 2.16 72016 30 1455 64450 2.21 65905 31 1335 63879 2.05 65214 32 1361 65187 2.05 66548 33 1380 74594 1.82 75974 34 1377 63659 2.12 65036 35 1420 64657 2.15 66077 36 1370 63644 2.11 65014 37 1283 60820 2.07 62103 38 1421 63832 2.18 65253 39 1550 62686 2.41 64236 40 1425 59294 2.35 60719 41 1465 56572 2.52 58037 42 1487 53389 2.71 54876 43 1499 55637 2.62 57136 44 1380 55984 2.41 57364 45 1277 50035 2.49 51312 46 1187 50112 2.31 51299 47 1460 51593 2.75 53053 48 1489 49873 2.90 51362 49 1401 51778 2.63 53179 50 1648 51100 3.12 52748 51 1484 46858 3.07 48342 52 1392 46599 2.90 47991 53 1596 50854 3.04 52450 54 1462 46753 3.03 48215 55 1383 48299 2.78 49682 56 1280 46228 2.69 47508 57 1907 44675 4.09 46582 58 1468 46365 3.07 47833 59 1192 44288 2.62 45480 60 1468 43022 3.30 44490 61 1061 41936 2.47 42997 62 1077 44656 2.35 45733 63 904 45021 1.97 45925 64 844 39579 2.09 40423 65 905 42880 2.07 43785 66 844 38261 2.16 39105 67 960 41866 2.24 42826 68 853 42025 1.99 42878 69 929 39674 2.29 40603 70 853 38927 2.14 39780 71 799 40202 1.95 41001 72 794 36077 2.15 36871 73 777 36862 2.06 37639 74 770 38043 1.98 38813 75 735 35220 2.04 35955 76 716 35339 1.99 36055 77 814 36990 2.15 37804 78 824 37199 2.17 38023 79 742 34847 2.08 35589 80 724 34088 2.08 34812 81 828 32731 2.47 33559 82 806 32730 2.40 33536 83 765 33364 2.24 34129 84 683 31342 2.13 32025 85 749 35272 2.08 36021 86 719 31881 2.21 32600 87 820 31778 2.52 32598 88 766 29937 2.49 30703 89 890 33109 2.62 33999 90 789 31648 2.43 32437 91 794 32225 2.40 33019 92 725 31511 2.25 32236 93 744 29497 2.46 30241 94 629 29162 2.11 29791 95 708 29709 2.33 30417 96 936 28917 3.14 29853 97 714 28053 2.48 28767 98 622 26811 2.27 27433 99 699 0 100.00 699 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 51877 102688 33.56 154565 2 50049 85789 36.84 135838 3 53387 84115 38.83 137502 4 55239 79254 41.07 134493 5 27111 157190 14.71 184301 6 27710 219611 11.20 247321 7 27826 292334 8.69 320160 8 25538 290277 8.09 315815 9 30064 273108 9.92 303172 10 26775 275211 8.87 301986 11 26894 271605 9.01 298499 12 25222 252968 9.07 278190 13 24432 262810 8.51 287242 14 25008 262999 8.68 288007 15 24370 266057 8.39 290427 16 21828 254012 7.91 275840 17 24232 255299 8.67 279531 18 22746 258175 8.10 280921 19 21178 242120 8.04 263298 20 24146 253750 8.69 277896 21 23332 235506 9.01 258838 22 24386 229138 9.62 253524 23 23552 225935 9.44 249487 24 21667 214981 9.16 236648 25 24166 216062 10.06 240228 26 21978 212880 9.36 234858 27 22837 225847 9.18 248684 28 21517 219697 8.92 241214 29 22497 216459 9.41 238956 30 24034 208179 10.35 232213 31 22663 200933 10.14 223596 32 21463 195520 9.89 216983 33 23640 190743 11.03 214383 34 21989 190751 10.34 212740 35 21756 196392 9.97 218148 36 20232 198093 9.27 218325 37 20204 191818 9.53 212022 38 21905 197870 9.97 219775 39 22194 186390 10.64 208584 40 20898 190564 9.88 211462 41 21792 183193 10.63 204985 42 21619 184851 10.47 206470 43 21175 175440 10.77 196615 44 19569 176405 9.99 195974 45 20113 174344 10.34 194457 46 19382 175176 9.96 194558 47 18343 172487 9.61 190830 48 19336 167163 10.37 186499 49 18403 165705 10.00 184108 50 18583 165032 10.12 183615 51 18848 160046 10.54 178894 52 17730 151813 10.46 169543 53 17441 154321 10.15 171762 54 16667 148775 10.07 165442 55 16275 151572 9.70 167847 56 16614 149878 9.98 166492 57 16281 150659 9.75 166940 58 15302 146521 9.46 161823 59 16225 141897 10.26 158122 60 15583 143771 9.78 159354 61 16507 137048 10.75 153555 62 15391 136475 10.13 151866 63 14907 135528 9.91 150435 64 15690 131873 10.63 147563 65 14697 132717 9.97 147414 66 14593 129876 10.10 144469 67 14003 129531 9.76 143534 68 13891 132120 9.51 146011 69 14764 129274 10.25 144038 70 13975 126967 9.92 140942 71 13564 123103 9.92 136667 72 14644 121882 10.73 136526 73 13956 119232 10.48 133188 74 13212 119402 9.96 132614 75 13548 119831 10.16 133379 76 12445 115904 9.70 128349 77 14049 115163 10.87 129212 78 13501 116162 10.41 129663 79 12846 117482 9.86 130328 80 13429 113926 10.54 127355 81 13511 113958 10.60 127469 82 13234 111914 10.57 125148 83 12215 111716 9.86 123931 84 12877 112681 10.26 125558 85 12220 108948 10.09 121168 86 11723 108816 9.73 120539 87 11963 106504 10.10 118467 88 11337 104572 9.78 115909 89 11593 103171 10.10 114764 90 11691 104001 10.11 115692 91 11356 102469 9.98 113825 92 10781 101146 9.63 111927 93 10909 99750 9.86 110659 94 10227 97476 9.50 107703 95 10470 95681 9.86 106151 96 10370 95848 9.76 106218 97 9614 95527 9.14 105141 98 9083 90202 9.15 99285 99 6565 0 100.00 6565