Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-185_S19_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-185_S19_L003_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 11003725
Paired-end alignments with a unique best hit 6169909
Pairs without alignments under any condition 3011158
Pairs that did not map uniquely 1822658
Genomic sequence context not extractable (edges of chromosomes) 45533

Cytosine Methylation

Total C's analysed 199789103
Methylated C's in CpG context 5755738
Methylated C's in CHG context 1248116
Methylated C's in CHH context 11027202
Methylated C's in Unknown context 354430
Unmethylated C's in CpG context 24400774
Unmethylated C's in CHG context 41504432
Unmethylated C's in CHH context 115852841
Unmethylated C's in Unknown context 1081758
Percentage methylation (CpG context) 19.1%
Percentage methylation (CHG context) 2.9%
Percentage methylation (CHH context) 8.7%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 3004141 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 3120235 original bottom strand