EPI-184_S18_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 8377024 lines in total Total number of methylation call strings processed: 16754048 Final Cytosine Methylation Report ================================= Total number of C's analysed: 182659399 Total methylated C's in CpG context: 6423527 Total methylated C's in CHG context: 1047628 Total methylated C's in CHH context: 6582803 Total C to T conversions in CpG context: 18733650 Total C to T conversions in CHG context: 37912742 Total C to T conversions in CHH context: 111959049 C methylated in CpG context: 25.5% C methylated in CHG context: 2.7% C methylated in CHH context: 5.6%