CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 112651 179864 38.51 292515 2 106249 200400 34.65 306649 3 104325 189875 35.46 294200 4 109876 170019 39.26 279895 5 107800 148372 42.08 256172 6 108800 126569 46.23 235369 7 121227 123792 49.48 245019 8 59444 144370 29.17 203814 9 53643 134201 28.56 187844 10 54032 131350 29.15 185382 11 56792 134312 29.72 191104 12 54790 133429 29.11 188219 13 54363 135290 28.66 189653 14 51996 137409 27.45 189405 15 50810 137940 26.92 188750 16 47308 138218 25.50 185526 17 45668 134351 25.37 180019 18 47251 137964 25.51 185215 19 46259 137639 25.15 183898 20 46036 139169 24.86 185205 21 46692 139408 25.09 186100 22 44866 137835 24.56 182701 23 45033 137585 24.66 182618 24 44893 138324 24.50 183217 25 44179 136679 24.43 180858 26 44696 136854 24.62 181550 27 44025 139071 24.04 183096 28 45213 139370 24.49 184583 29 43924 138614 24.06 182538 30 43274 139273 23.71 182547 31 44264 137982 24.29 182246 32 43472 136183 24.20 179655 33 43663 137738 24.07 181401 34 44750 137080 24.61 181830 35 44026 137828 24.21 181854 36 43259 139945 23.61 183204 37 42483 135835 23.82 178318 38 41935 135804 23.59 177739 39 43340 137157 24.01 180497 40 42786 136114 23.92 178900 41 42672 135081 24.01 177753 42 43433 138042 23.93 181475 43 42936 137225 23.83 180161 44 42490 135228 23.91 177718 45 42960 136265 23.97 179225 46 43233 136700 24.03 179933 47 42094 134890 23.78 176984 48 42113 135844 23.66 177957 49 43283 135866 24.16 179149 50 42500 135816 23.83 178316 51 42596 135174 23.96 177770 52 42893 137125 23.83 180018 53 41801 133600 23.83 175401 54 41260 133542 23.60 174802 55 41317 131486 23.91 172803 56 41122 131127 23.87 172249 57 41766 132931 23.91 174697 58 42996 133163 24.41 176159 59 43094 131357 24.70 174451 60 41964 133063 23.98 175027 61 42597 130321 24.63 172918 62 41651 131022 24.12 172673 63 41080 130460 23.95 171540 64 40422 128831 23.88 169253 65 40739 127624 24.20 168363 66 41642 128497 24.48 170139 67 40615 125433 24.46 166048 68 39658 125960 23.95 165618 69 39705 123848 24.28 163553 70 39179 123450 24.09 162629 71 38394 120339 24.19 158733 72 37983 120474 23.97 158457 73 37831 119077 24.11 156908 74 37494 118342 24.06 155836 75 36762 118023 23.75 154785 76 36216 117777 23.52 153993 77 36938 115193 24.28 152131 78 36355 116610 23.77 152965 79 35747 114294 23.82 150041 80 34980 113745 23.52 148725 81 34465 112221 23.50 146686 82 33845 110396 23.46 144241 83 34117 110710 23.56 144827 84 34018 110238 23.58 144256 85 33015 108772 23.28 141787 86 32574 105786 23.54 138360 87 31872 106134 23.09 138006 88 31653 103755 23.38 135408 89 31500 104205 23.21 135705 90 31252 104745 22.98 135997 91 30492 102671 22.90 133163 92 30269 101532 22.97 131801 93 30236 101175 23.01 131411 94 29901 99830 23.05 129731 95 29274 98639 22.89 127913 96 28845 98038 22.73 126883 97 28697 95815 23.05 124512 98 26682 90143 22.84 116825 99 21098 71390 22.81 92488 100 27098 90095 23.12 117193 101 25480 90382 21.99 115862 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 144915 279071 34.18 423986 2 83666 270423 23.63 354089 3 39037 260675 13.02 299712 4 24394 257513 8.65 281907 5 16869 233838 6.73 250707 6 14457 220897 6.14 235354 7 10298 275714 3.60 286012 8 5973 297287 1.97 303260 9 4740 284087 1.64 288827 10 4855 275009 1.73 279864 11 5414 273645 1.94 279059 12 4989 272326 1.80 277315 13 4802 266269 1.77 271071 14 4629 267197 1.70 271826 15 4711 274231 1.69 278942 16 4130 273456 1.49 277586 17 5160 269116 1.88 274276 18 4270 268441 1.57 272711 19 3757 270335 1.37 274092 20 4225 282790 1.47 287015 21 4039 284350 1.40 288389 22 4330 281161 1.52 285491 23 4466 285181 1.54 289647 24 4277 287751 1.46 292028 25 4512 279668 1.59 284180 26 5713 282966 1.98 288679 27 3937 286783 1.35 290720 28 3702 285142 1.28 288844 29 5094 289911 1.73 295005 30 3795 288694 1.30 292489 31 3808 284443 1.32 288251 32 4102 287746 1.41 291848 33 3919 289201 1.34 293120 34 4004 283963 1.39 287967 35 5119 284551 1.77 289670 36 4079 287198 1.40 291277 37 3945 277909 1.40 281854 38 4865 283014 1.69 287879 39 3988 281293 1.40 285281 40 3940 283155 1.37 287095 41 3812 281817 1.33 285629 42 3739 283193 1.30 286932 43 3787 277159 1.35 280946 44 3844 281354 1.35 285198 45 3912 280501 1.38 284413 46 4049 278295 1.43 282344 47 4334 279857 1.53 284191 48 3754 285419 1.30 289173 49 3965 279267 1.40 283232 50 4383 278695 1.55 283078 51 3971 282468 1.39 286439 52 4083 281983 1.43 286066 53 4087 278072 1.45 282159 54 4428 281975 1.55 286403 55 4254 279208 1.50 283462 56 4486 280944 1.57 285430 57 4400 280705 1.54 285105 58 4501 278086 1.59 282587 59 4799 278561 1.69 283360 60 4492 279607 1.58 284099 61 4613 274259 1.65 278872 62 4969 275108 1.77 280077 63 5022 274049 1.80 279071 64 4975 269314 1.81 274289 65 6221 269445 2.26 275666 66 4745 264699 1.76 269444 67 4760 259825 1.80 264585 68 5624 260788 2.11 266412 69 4490 259435 1.70 263925 70 4440 252734 1.73 257174 71 4494 253684 1.74 258178 72 4553 253158 1.77 257711 73 4465 249534 1.76 253999 74 5033 249062 1.98 254095 75 4189 248885 1.66 253074 76 4724 238488 1.94 243212 77 5188 240091 2.12 245279 78 4206 236681 1.75 240887 79 4440 231432 1.88 235872 80 4322 231953 1.83 236275 81 4117 228663 1.77 232780 82 4132 224678 1.81 228810 83 4334 228359 1.86 232693 84 4268 226934 1.85 231202 85 4221 221844 1.87 226065 86 4686 221048 2.08 225734 87 4560 221373 2.02 225933 88 4989 211802 2.30 216791 89 4188 215634 1.91 219822 90 3976 215161 1.81 219137 91 4197 210766 1.95 214963 92 4245 211658 1.97 215903 93 4445 210096 2.07 214541 94 4185 204813 2.00 208998 95 4497 202759 2.17 207256 96 4431 202117 2.15 206548 97 4459 185008 2.35 189467 98 4159 169440 2.40 173599 99 2232 111276 1.97 113508 100 3102 112722 2.68 115824 101 5655 182593 3.00 188248 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 227550 387667 36.99 615217 2 145987 415144 26.02 561131 3 92862 444524 17.28 537386 4 87322 476056 15.50 563378 5 84775 548855 13.38 633630 6 71919 602773 10.66 674692 7 52326 749521 6.53 801847 8 48530 811626 5.64 860156 9 36997 745987 4.73 782984 10 37249 721303 4.91 758552 11 49137 724235 6.35 773372 12 41284 730898 5.35 772182 13 45826 744418 5.80 790244 14 51700 764864 6.33 816564 15 43436 782245 5.26 825681 16 43285 792123 5.18 835408 17 51467 800045 6.04 851512 18 41346 829092 4.75 870438 19 42331 843053 4.78 885384 20 50204 869152 5.46 919356 21 42785 873798 4.67 916583 22 46663 872345 5.08 919008 23 51262 874593 5.54 925855 24 43166 872180 4.72 915346 25 48081 874040 5.21 922121 26 51556 887506 5.49 939062 27 43429 890126 4.65 933555 28 43233 898530 4.59 941763 29 51001 897620 5.38 948621 30 42828 891634 4.58 934462 31 44803 881792 4.84 926595 32 48742 877425 5.26 926167 33 43205 882141 4.67 925346 34 49327 887573 5.26 936900 35 51352 880011 5.51 931363 36 43511 889303 4.66 932814 37 42265 883810 4.56 926075 38 51390 889418 5.46 940808 39 42597 882134 4.61 924731 40 43354 877251 4.71 920605 41 51134 880708 5.49 931842 42 45058 882211 4.86 927269 43 48346 878199 5.22 926545 44 49755 883760 5.33 933515 45 45904 877511 4.97 923415 46 44324 878884 4.80 923208 47 48854 879533 5.26 928387 48 41196 878634 4.48 919830 49 41914 870318 4.59 912232 50 48083 867587 5.25 915670 51 41142 862227 4.55 903369 52 44685 858062 4.95 902747 53 48504 852523 5.38 901027 54 42112 851811 4.71 893923 55 42915 844534 4.84 887449 56 48248 844129 5.41 892377 57 40863 849716 4.59 890579 58 41863 846082 4.71 887945 59 48675 844654 5.45 893329 60 40426 835580 4.61 876006 61 44006 827385 5.05 871391 62 46929 816682 5.43 863611 63 40707 810520 4.78 851227 64 42983 804900 5.07 847883 65 45112 799182 5.34 844294 66 39619 793175 4.76 832794 67 39155 784556 4.75 823711 68 44112 780977 5.35 825089 69 38617 777306 4.73 815923 70 39048 767259 4.84 806307 71 43699 765922 5.40 809621 72 38563 764460 4.80 803023 73 42436 749187 5.36 791623 74 43828 747442 5.54 791270 75 38064 738549 4.90 776613 76 38482 731139 5.00 769621 77 43633 726052 5.67 769685 78 35460 724304 4.67 759764 79 37304 712337 4.98 749641 80 42161 710945 5.60 753106 81 37365 700009 5.07 737374 82 39453 693383 5.38 732836 83 41839 692639 5.70 734478 84 37638 682743 5.22 720381 85 35793 673586 5.05 709379 86 39362 666014 5.58 705376 87 35101 656860 5.07 691961 88 36006 639448 5.33 675454 89 39357 647512 5.73 686869 90 33762 642846 4.99 676608 91 35096 634877 5.24 669973 92 37476 631748 5.60 669224 93 33200 625712 5.04 658912 94 33407 619621 5.12 653028 95 37396 611039 5.77 648435 96 31207 599778 4.95 630985 97 31212 582170 5.09 613382 98 33828 543665 5.86 577493 99 19058 380478 4.77 399536 100 21164 340984 5.84 362148 101 32352 547910 5.58 580262 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 97080 124260 43.86 221340 2 85851 110304 43.77 196155 3 92339 123060 42.87 215399 4 85840 140049 38.00 225889 5 37196 182739 16.91 219935 6 22429 100073 18.31 122502 7 19803 104736 15.90 124539 8 20761 98802 17.36 119563 9 18388 85520 17.70 103908 10 19966 93820 17.55 113786 11 21101 92422 18.59 113523 12 20358 88738 18.66 109096 13 21306 86217 19.82 107523 14 22161 88280 20.07 110441 15 21464 80974 20.95 102438 16 20106 77477 20.60 97583 17 24285 83742 22.48 108027 18 23784 80962 22.71 104746 19 22425 79272 22.05 101697 20 20928 77748 21.21 98676 21 21619 74884 22.40 96503 22 21576 78216 21.62 99792 23 20283 73531 21.62 93814 24 19948 71759 21.75 91707 25 21478 73502 22.61 94980 26 19580 71110 21.59 90690 27 21520 71710 23.08 93230 28 19624 67000 22.65 86624 29 19979 70865 21.99 90844 30 19646 66223 22.88 85869 31 18700 68099 21.54 86799 32 18063 64120 21.98 82183 33 20198 64764 23.77 84962 34 19455 67818 22.29 87273 35 23077 71248 24.47 94325 36 19569 63974 23.42 83543 37 19926 64451 23.62 84377 38 18284 63578 22.34 81862 39 18507 62117 22.95 80624 40 20093 61875 24.51 81968 41 17849 61867 22.39 79716 42 17901 62838 22.17 80739 43 18037 60988 22.82 79025 44 16898 57885 22.60 74783 45 19980 63513 23.93 83493 46 16560 55422 23.01 71982 47 16775 57688 22.53 74463 48 16888 57209 22.79 74097 49 16313 59653 21.47 75966 50 15119 52872 22.24 67991 51 15413 52107 22.83 67520 52 15653 53606 22.60 69259 53 15734 52618 23.02 68352 54 15198 52439 22.47 67637 55 15425 49703 23.68 65128 56 14447 49519 22.59 63966 57 14464 49161 22.73 63625 58 14092 49553 22.14 63645 59 13219 45699 22.44 58918 60 13983 45967 23.32 59950 61 12623 45066 21.88 57689 62 12206 42822 22.18 55028 63 13209 42861 23.56 56070 64 12672 43304 22.64 55976 65 12503 40985 23.38 53488 66 12859 43106 22.98 55965 67 11914 43475 21.51 55389 68 12826 43787 22.66 56613 69 11881 40692 22.60 52573 70 11480 40448 22.11 51928 71 11905 37492 24.10 49397 72 11261 36647 23.51 47908 73 11051 37600 22.71 48651 74 10336 37064 21.81 47400 75 10617 36948 22.32 47565 76 10650 35436 23.11 46086 77 10567 35815 22.78 46382 78 10410 35396 22.73 45806 79 10063 33777 22.95 43840 80 9753 33751 22.42 43504 81 9776 33876 22.40 43652 82 9761 34021 22.29 43782 83 9748 31922 23.39 41670 84 10731 34078 23.95 44809 85 9363 32130 22.57 41493 86 9301 31850 22.60 41151 87 9195 31569 22.56 40764 88 9180 30808 22.96 39988 89 9521 31492 23.21 41013 90 9471 30969 23.42 40440 91 8963 29988 23.01 38951 92 8706 30185 22.39 38891 93 8768 30042 22.59 38810 94 9054 29940 23.22 38994 95 8683 28818 23.15 37501 96 8495 28394 23.03 36889 97 9033 30347 22.94 39380 98 8189 27674 22.83 35863 99 7172 0 100.00 7172 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 32527 154745 17.37 187272 2 34369 160445 17.64 194814 3 31930 164310 16.27 196240 4 34584 174037 16.58 208621 5 4871 319067 1.50 323938 6 3484 391609 0.88 395093 7 2339 218353 1.06 220692 8 2260 231747 0.97 234007 9 2222 195232 1.13 197454 10 2065 185640 1.10 187705 11 3088 244023 1.25 247111 12 2463 196182 1.24 198645 13 2185 196104 1.10 198289 14 2336 188722 1.22 191058 15 2367 183326 1.27 185693 16 2136 169016 1.25 171152 17 2328 180863 1.27 183191 18 3043 159675 1.87 162718 19 2199 159459 1.36 161658 20 2254 159066 1.40 161320 21 3191 151085 2.07 154276 22 2380 165927 1.41 168307 23 2197 162203 1.34 164400 24 2019 148670 1.34 150689 25 2071 150088 1.36 152159 26 2359 159849 1.45 162208 27 2081 146437 1.40 148518 28 2163 140537 1.52 142700 29 2249 151058 1.47 153307 30 2180 141757 1.51 143937 31 2026 139070 1.44 141096 32 1962 140497 1.38 142459 33 2229 162449 1.35 164678 34 1977 137811 1.41 139788 35 2030 139884 1.43 141914 36 1997 138337 1.42 140334 37 1914 129424 1.46 131338 38 2150 138609 1.53 140759 39 2079 133711 1.53 135790 40 2045 127953 1.57 129998 41 2060 122378 1.66 124438 42 2267 114057 1.95 116324 43 2103 120854 1.71 122957 44 1927 120426 1.57 122353 45 1836 108856 1.66 110692 46 1897 109895 1.70 111792 47 2075 112624 1.81 114699 48 1968 106895 1.81 108863 49 2006 111094 1.77 113100 50 2328 108496 2.10 110824 51 1964 100030 1.93 101994 52 2051 99692 2.02 101743 53 2215 109635 1.98 111850 54 1983 99803 1.95 101786 55 2020 101493 1.95 103513 56 1830 99954 1.80 101784 57 2336 95883 2.38 98219 58 1921 96634 1.95 98555 59 1634 95016 1.69 96650 60 1795 91477 1.92 93272 61 1297 90732 1.41 92029 62 1383 94432 1.44 95815 63 1255 95806 1.29 97061 64 1148 85125 1.33 86273 65 1312 90620 1.43 91932 66 1138 82776 1.36 83914 67 1259 90387 1.37 91646 68 1087 88447 1.21 89534 69 1162 84406 1.36 85568 70 1089 84172 1.28 85261 71 1108 86742 1.26 87850 72 1063 78885 1.33 79948 73 959 79230 1.20 80189 74 1033 81251 1.26 82284 75 1053 76671 1.35 77724 76 1027 75659 1.34 76686 77 1081 80473 1.33 81554 78 1086 77513 1.38 78599 79 1018 75078 1.34 76096 80 958 71912 1.31 72870 81 1064 70612 1.48 71676 82 886 68787 1.27 69673 83 954 71793 1.31 72747 84 905 67715 1.32 68620 85 992 75194 1.30 76186 86 974 67994 1.41 68968 87 1018 68150 1.47 69168 88 967 64776 1.47 65743 89 1085 69759 1.53 70844 90 951 67784 1.38 68735 91 964 68630 1.39 69594 92 915 66308 1.36 67223 93 909 63055 1.42 63964 94 906 61789 1.45 62695 95 937 63431 1.46 64368 96 1088 61242 1.75 62330 97 854 60284 1.40 61138 98 845 58019 1.44 58864 99 777 0 100.00 777 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 70116 216849 24.43 286965 2 62581 180708 25.72 243289 3 65315 179273 26.70 244588 4 65791 172140 27.65 237931 5 26359 338182 7.23 364541 6 26154 471656 5.25 497810 7 26110 632387 3.97 658497 8 24405 627771 3.74 652176 9 28924 589458 4.68 618382 10 25229 597479 4.05 622708 11 25463 590175 4.14 615638 12 24334 549494 4.24 573828 13 23132 568364 3.91 591496 14 23865 569230 4.02 593095 15 23265 582355 3.84 605620 16 20943 554196 3.64 575139 17 23072 557812 3.97 580884 18 21993 558978 3.79 580971 19 20066 523417 3.69 543483 20 23374 551003 4.07 574377 21 22259 511806 4.17 534065 22 23239 498800 4.45 522039 23 22624 490792 4.41 513416 24 20856 467528 4.27 488384 25 22573 467988 4.60 490561 26 21143 463661 4.36 484804 27 21931 489212 4.29 511143 28 20428 475679 4.12 496107 29 21375 467104 4.38 488479 30 22612 450847 4.78 473459 31 20877 436787 4.56 457664 32 20295 424229 4.57 444524 33 22365 417262 5.09 439627 34 20534 417692 4.69 438226 35 21010 429399 4.66 450409 36 19797 428109 4.42 447906 37 19306 416718 4.43 436024 38 21055 431794 4.65 452849 39 20920 403245 4.93 424165 40 19679 417425 4.50 437104 41 20645 394788 4.97 415433 42 20441 399947 4.86 420388 43 19847 379331 4.97 399178 44 18584 380536 4.66 399120 45 19283 377163 4.86 396446 46 18070 379758 4.54 397828 47 17871 374210 4.56 392081 48 18377 361809 4.83 380186 49 17217 361331 4.55 378548 50 17688 357101 4.72 374789 51 17800 348453 4.86 366253 52 16415 329135 4.75 345550 53 16412 332062 4.71 348474 54 15616 321592 4.63 337208 55 15335 327633 4.47 342968 56 15605 323889 4.60 339494 57 15066 325804 4.42 340870 58 14040 318598 4.22 332638 59 14879 306546 4.63 321425 60 14305 309625 4.42 323930 61 14792 297202 4.74 311994 62 13965 294537 4.53 308502 63 13453 294528 4.37 307981 64 13877 286548 4.62 300425 65 13144 289529 4.34 302673 66 13119 281159 4.46 294278 67 12866 280389 4.39 293255 68 12602 288344 4.19 300946 69 13319 280451 4.53 293770 70 12419 273784 4.34 286203 71 12311 267022 4.41 279333 72 13334 265649 4.78 278983 73 12407 260138 4.55 272545 74 12239 261626 4.47 273865 75 12060 261843 4.40 273903 76 11382 252132 4.32 263514 77 12364 248803 4.73 261167 78 11976 253141 4.52 265117 79 11707 255143 4.39 266850 80 12052 247446 4.64 259498 81 12283 247105 4.74 259388 82 11796 243559 4.62 255355 83 11021 241953 4.36 252974 84 11496 242810 4.52 254306 85 10732 236264 4.35 246996 86 10669 234242 4.36 244911 87 10999 230666 4.55 241665 88 10057 225451 4.27 235508 89 10492 222772 4.50 233264 90 10598 224659 4.50 235257 91 10050 219771 4.37 229821 92 9463 218826 4.15 228289 93 9664 215962 4.28 225626 94 9074 212645 4.09 221719 95 9292 207702 4.28 216994 96 9324 207114 4.31 216438 97 8518 206714 3.96 215232 98 8150 196330 3.99 204480 99 5798 0 100.00 5798