Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-184_S18_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-184_S18_L003_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 20689148
Paired-end alignments with a unique best hit 11872031
Pairs without alignments under any condition 5355311
Pairs that did not map uniquely 3461806
Genomic sequence context not extractable (edges of chromosomes) 94310

Cytosine Methylation

Total C's analysed 370121001
Methylated C's in CpG context 11496867
Methylated C's in CHG context 1916863
Methylated C's in CHH context 10685335
Methylated C's in Unknown context 345749
Unmethylated C's in CpG context 41404872
Unmethylated C's in CHG context 80232732
Unmethylated C's in CHH context 224384332
Unmethylated C's in Unknown context 2067555
Percentage methylation (CpG context) 21.7%
Percentage methylation (CHG context) 2.3%
Percentage methylation (CHH context) 4.5%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 5852146 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 5925575 original bottom strand