CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 204522 386789 34.59 591311 2 191050 421155 31.21 612205 3 178512 367301 32.71 545813 4 186498 290875 39.07 477373 5 182416 247499 42.43 429915 6 184019 211877 46.48 395896 7 206899 208883 49.76 415782 8 100767 235477 29.97 336244 9 90881 216320 29.58 307201 10 91010 209635 30.27 300645 11 95575 215214 30.75 310789 12 92526 219179 29.68 311705 13 90568 225067 28.69 315635 14 86889 224236 27.93 311125 15 84784 225647 27.31 310431 16 78383 223891 25.93 302274 17 74414 217546 25.49 291960 18 76704 221437 25.73 298141 19 75553 223521 25.26 299074 20 75823 225963 25.12 301786 21 75650 228482 24.87 304132 22 73793 224821 24.71 298614 23 74136 224076 24.86 298212 24 72506 222427 24.58 294933 25 70919 221879 24.22 292798 26 71625 219607 24.59 291232 27 71837 225413 24.17 297250 28 73137 223485 24.66 296622 29 71178 228927 23.72 300105 30 70603 225610 23.84 296213 31 71376 221706 24.35 293082 32 70650 218221 24.46 288871 33 71075 220932 24.34 292007 34 72089 220563 24.63 292652 35 71048 219120 24.49 290168 36 70420 223033 24.00 293453 37 68808 218271 23.97 287079 38 67607 218775 23.61 286382 39 69919 220523 24.07 290442 40 69820 217842 24.27 287662 41 69967 218753 24.23 288720 42 70725 221833 24.17 292558 43 69413 220609 23.93 290022 44 69725 217774 24.25 287499 45 70100 217825 24.35 287925 46 70535 221049 24.19 291584 47 69743 216119 24.40 285862 48 69490 217805 24.19 287295 49 71266 217603 24.67 288869 50 68771 220588 23.77 289359 51 70213 220064 24.19 290277 52 70152 227474 23.57 297626 53 69043 217152 24.12 286195 54 67778 216676 23.83 284454 55 67353 211176 24.18 278529 56 66987 211236 24.08 278223 57 68725 213286 24.37 282011 58 69230 213799 24.46 283029 59 69795 212316 24.74 282111 60 68139 214836 24.08 282975 61 69089 210621 24.70 279710 62 67498 213202 24.05 280700 63 67174 211881 24.07 279055 64 66297 210805 23.93 277102 65 67097 207312 24.45 274409 66 68153 208157 24.67 276310 67 66808 204713 24.61 271521 68 65862 204588 24.35 270450 69 64984 202358 24.31 267342 70 64873 202904 24.23 267777 71 63416 199953 24.08 263369 72 63130 199210 24.06 262340 73 62772 196142 24.24 258914 74 62397 194772 24.26 257169 75 61101 194013 23.95 255114 76 60623 192673 23.93 253296 77 61707 190716 24.45 252423 78 61835 192224 24.34 254059 79 59793 187926 24.14 247719 80 59334 188704 23.92 248038 81 58404 186460 23.85 244864 82 57496 185045 23.71 242541 83 58078 186437 23.75 244515 84 58298 185841 23.88 244139 85 56809 182845 23.70 239654 86 56137 179272 23.85 235409 87 54567 177902 23.47 232469 88 55261 174299 24.07 229560 89 53916 176297 23.42 230213 90 54443 175374 23.69 229817 91 53619 173103 23.65 226722 92 52789 172337 23.45 225126 93 52618 170644 23.57 223262 94 52324 169492 23.59 221816 95 50892 167559 23.30 218451 96 51725 170103 23.32 221828 97 50240 163841 23.47 214081 98 46655 153745 23.28 200400 99 36696 122696 23.02 159392 100 46842 153722 23.36 200564 101 43320 152777 22.09 196097 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 299967 461312 39.40 761279 2 177179 436541 28.87 613720 3 77132 417412 15.60 494544 4 40099 417120 8.77 457219 5 25760 384279 6.28 410039 6 23470 376416 5.87 399886 7 16865 457847 3.55 474712 8 8233 492159 1.65 500392 9 6818 462561 1.45 469379 10 6909 446427 1.52 453336 11 7127 447973 1.57 455100 12 6900 452005 1.50 458905 13 6524 436134 1.47 442658 14 6108 435374 1.38 441482 15 6300 446113 1.39 452413 16 5504 445308 1.22 450812 17 6033 440290 1.35 446323 18 5542 438969 1.25 444511 19 4901 440062 1.10 444963 20 5189 457350 1.12 462539 21 5068 463749 1.08 468817 22 5250 459118 1.13 464368 23 5397 462365 1.15 467762 24 5126 468000 1.08 473126 25 5720 452755 1.25 458475 26 5952 458524 1.28 464476 27 5146 464627 1.10 469773 28 4971 463925 1.06 468896 29 5658 468573 1.19 474231 30 4930 470780 1.04 475710 31 4828 464130 1.03 468958 32 5359 466697 1.14 472056 33 4786 469432 1.01 474218 34 4880 462394 1.04 467274 35 5731 464874 1.22 470605 36 5004 464453 1.07 469457 37 4812 454358 1.05 459170 38 5376 461629 1.15 467005 39 4888 458334 1.06 463222 40 4712 456994 1.02 461706 41 4934 458360 1.06 463294 42 4835 461362 1.04 466197 43 4696 454831 1.02 459527 44 4849 460496 1.04 465345 45 4894 460783 1.05 465677 46 4763 455641 1.03 460404 47 5097 456527 1.10 461624 48 4810 465640 1.02 470450 49 4950 456898 1.07 461848 50 5118 457993 1.11 463111 51 4790 462306 1.03 467096 52 5115 458019 1.10 463134 53 5165 455272 1.12 460437 54 5314 464133 1.13 469447 55 5194 455888 1.13 461082 56 5292 460723 1.14 466015 57 5344 459104 1.15 464448 58 5359 456387 1.16 461746 59 5788 458800 1.25 464588 60 5549 462904 1.18 468453 61 5637 456225 1.22 461862 62 5758 456212 1.25 461970 63 5873 453727 1.28 459600 64 6055 451874 1.32 457929 65 6764 449123 1.48 455887 66 6031 442993 1.34 449024 67 5925 435086 1.34 441011 68 6514 437587 1.47 444101 69 5795 436083 1.31 441878 70 5710 428874 1.31 434584 71 5819 428556 1.34 434375 72 5821 428274 1.34 434095 73 5669 422917 1.32 428586 74 5973 420688 1.40 426661 75 5695 421222 1.33 426917 76 6099 409040 1.47 415139 77 6173 411921 1.48 418094 78 5564 405107 1.35 410671 79 5963 398731 1.47 404694 80 5682 398659 1.41 404341 81 5683 395756 1.42 401439 82 5642 388524 1.43 394166 83 5717 394299 1.43 400016 84 6047 392647 1.52 398694 85 5819 384335 1.49 390154 86 5980 387169 1.52 393149 87 6612 384276 1.69 390888 88 7280 370992 1.92 378272 89 5862 377267 1.53 383129 90 5786 376055 1.52 381841 91 5910 368514 1.58 374424 92 6078 368188 1.62 374266 93 6198 367594 1.66 373792 94 5865 359767 1.60 365632 95 6213 357028 1.71 363241 96 6092 355758 1.68 361850 97 5977 324588 1.81 330565 98 5477 299573 1.80 305050 99 3430 193561 1.74 196991 100 4001 197335 1.99 201336 101 7818 322191 2.37 330009 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 342590 606902 36.08 949492 2 184250 645929 22.19 830179 3 103597 740794 12.27 844391 4 91673 793804 10.35 885477 5 85653 927328 8.46 1012981 6 71061 1013806 6.55 1084867 7 58543 1247719 4.48 1306262 8 43541 1343605 3.14 1387146 9 33786 1235798 2.66 1269584 10 33726 1206280 2.72 1240006 11 42069 1205089 3.37 1247158 12 36247 1218106 2.89 1254353 13 39762 1240709 3.11 1280471 14 43165 1271646 3.28 1314811 15 36829 1303707 2.75 1340536 16 36349 1324472 2.67 1360821 17 41713 1335707 3.03 1377420 18 35331 1383045 2.49 1418376 19 35990 1409255 2.49 1445245 20 41252 1455205 2.76 1496457 21 36195 1458307 2.42 1494502 22 38863 1463485 2.59 1502348 23 42037 1465147 2.79 1507184 24 36240 1470321 2.41 1506561 25 40358 1472833 2.67 1513191 26 42121 1491689 2.75 1533810 27 36713 1497157 2.39 1533870 28 36205 1503700 2.35 1539905 29 41626 1501359 2.70 1542985 30 36213 1490861 2.37 1527074 31 36926 1473911 2.44 1510837 32 41041 1474921 2.71 1515962 33 35774 1481721 2.36 1517495 34 40084 1491718 2.62 1531802 35 41988 1478775 2.76 1520763 36 36357 1492222 2.38 1528579 37 35961 1482618 2.37 1518579 38 41882 1492288 2.73 1534170 39 36151 1485621 2.38 1521772 40 36821 1487444 2.42 1524265 41 42350 1490690 2.76 1533040 42 37728 1502654 2.45 1540382 43 39845 1482597 2.62 1522442 44 40865 1494229 2.66 1535094 45 37783 1483494 2.48 1521277 46 37538 1489151 2.46 1526689 47 40642 1485376 2.66 1526018 48 35098 1489704 2.30 1524802 49 35650 1474714 2.36 1510364 50 39962 1468435 2.65 1508397 51 34883 1457690 2.34 1492573 52 37511 1453812 2.52 1491323 53 40176 1447294 2.70 1487470 54 35081 1451667 2.36 1486748 55 36693 1448155 2.47 1484848 56 39978 1444768 2.69 1484746 57 34682 1463242 2.32 1497924 58 35867 1454569 2.41 1490436 59 40717 1458493 2.72 1499210 60 35031 1439067 2.38 1474098 61 37404 1430388 2.55 1467792 62 39952 1418942 2.74 1458894 63 35179 1409420 2.44 1444599 64 37416 1399524 2.60 1436940 65 38923 1393830 2.72 1432753 66 34326 1385033 2.42 1419359 67 35145 1376693 2.49 1411838 68 37934 1370594 2.69 1408528 69 34140 1363119 2.44 1397259 70 34764 1354717 2.50 1389481 71 38106 1349482 2.75 1387588 72 34150 1346601 2.47 1380751 73 36730 1328384 2.69 1365114 74 37722 1323249 2.77 1360971 75 33461 1312696 2.49 1346157 76 36056 1301834 2.69 1337890 77 38232 1293502 2.87 1331734 78 32053 1286935 2.43 1318988 79 34639 1274175 2.65 1308814 80 37315 1271234 2.85 1308549 81 33724 1252508 2.62 1286232 82 34982 1243341 2.74 1278323 83 37332 1243983 2.91 1281315 84 34181 1226923 2.71 1261104 85 32868 1212835 2.64 1245703 86 35221 1202528 2.85 1237749 87 33352 1188438 2.73 1221790 88 36382 1162324 3.04 1198706 89 35167 1174679 2.91 1209846 90 31394 1172958 2.61 1204352 91 32192 1155467 2.71 1187659 92 34411 1153149 2.90 1187560 93 31173 1139735 2.66 1170908 94 30980 1132476 2.66 1163456 95 34318 1116371 2.98 1150689 96 29800 1096581 2.65 1126381 97 29973 1065824 2.74 1095797 98 31543 991460 3.08 1023003 99 18697 693498 2.63 712195 100 20394 620350 3.18 640744 101 30525 1002849 2.95 1033374 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 158922 199690 44.32 358612 2 141247 183949 43.43 325196 3 154535 206191 42.84 360726 4 143939 234947 37.99 378886 5 63926 303838 17.38 367764 6 37603 163600 18.69 201203 7 33938 175373 16.21 209311 8 35318 166490 17.50 201808 9 31924 145613 17.98 177537 10 35140 160658 17.95 195798 11 37303 155646 19.33 192949 12 36185 149234 19.52 185419 13 36703 145233 20.17 181936 14 38572 147572 20.72 186144 15 37286 136022 21.51 173308 16 36014 132107 21.42 168121 17 43036 142058 23.25 185094 18 41288 136422 23.23 177710 19 39620 132253 23.05 171873 20 37228 129317 22.35 166545 21 38598 127311 23.26 165909 22 37874 131068 22.42 168942 23 36390 125268 22.51 161658 24 34831 121260 22.31 156091 25 37657 124843 23.17 162500 26 34999 119592 22.64 154591 27 37196 120880 23.53 158076 28 34452 114737 23.09 149189 29 35519 120109 22.82 155628 30 34472 110888 23.71 145360 31 33125 114273 22.47 147398 32 31949 108180 22.80 140129 33 34849 108851 24.25 143700 34 33779 111909 23.19 145688 35 39732 116576 25.42 156308 36 34102 107562 24.07 141664 37 34764 110198 23.98 144962 38 31878 107842 22.82 139720 39 32809 103968 23.99 136777 40 34635 103998 24.98 138633 41 31334 102611 23.39 133945 42 31226 103409 23.19 134635 43 31549 101595 23.70 133144 44 29288 98129 22.99 127417 45 34827 104345 25.02 139172 46 28978 93716 23.62 122694 47 29459 95451 23.58 124910 48 29319 93512 23.87 122831 49 28613 97856 22.62 126469 50 27021 88568 23.38 115589 51 27019 87418 23.61 114437 52 27477 89913 23.41 117390 53 27493 87002 24.01 114495 54 27095 86416 23.87 113511 55 26854 84562 24.10 111416 56 25520 82892 23.54 108412 57 25910 81452 24.13 107362 58 25250 82155 23.51 107405 59 24413 77596 23.93 102009 60 25061 77604 24.41 102665 61 22919 75762 23.23 98681 62 22637 73574 23.53 96211 63 23639 72454 24.60 96093 64 22635 72943 23.68 95578 65 22175 68907 24.35 91082 66 23459 72077 24.56 95536 67 21787 71685 23.31 93472 68 22814 71611 24.16 94425 69 21696 68738 23.99 90434 70 20574 67781 23.29 88355 71 21048 63579 24.87 84627 72 20405 63004 24.46 83409 73 19795 64558 23.47 84353 74 18761 62653 23.04 81414 75 18603 61091 23.34 79694 76 19047 60144 24.05 79191 77 18793 59437 24.02 78230 78 18631 59910 23.72 78541 79 17802 57879 23.52 75681 80 17514 56711 23.60 74225 81 17489 56141 23.75 73630 82 17461 56196 23.71 73657 83 17513 54280 24.39 71793 84 18552 56479 24.73 75031 85 16688 54337 23.50 71025 86 16524 53566 23.58 70090 87 16362 52311 23.83 68673 88 16398 52133 23.93 68531 89 17032 51917 24.70 68949 90 16751 51604 24.51 68355 91 15752 50537 23.76 66289 92 15052 49711 23.24 64763 93 15435 49521 23.76 64956 94 15803 49450 24.22 65253 95 15762 47961 24.74 63723 96 14870 47812 23.72 62682 97 15776 48794 24.43 64570 98 14558 45660 24.18 60218 99 12630 0 100.00 12630 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 54859 274006 16.68 328865 2 58570 285178 17.04 343748 3 54293 289778 15.78 344071 4 57715 303075 16.00 360790 5 6337 555343 1.13 561680 6 4504 678555 0.66 683059 7 3139 373517 0.83 376656 8 3029 399617 0.75 402646 9 2786 339561 0.81 342347 10 2830 324413 0.86 327243 11 3776 410882 0.91 414658 12 2988 337492 0.88 340480 13 2926 337553 0.86 340479 14 3063 327753 0.93 330816 15 3101 313003 0.98 316104 16 2785 292570 0.94 295355 17 3109 312223 0.99 315332 18 3440 279662 1.22 283102 19 2913 276873 1.04 279786 20 2819 274012 1.02 276831 21 3412 262547 1.28 265959 22 3095 284575 1.08 287670 23 2811 279555 1.00 282366 24 2617 256420 1.01 259037 25 2770 259603 1.06 262373 26 2829 272634 1.03 275463 27 2750 254718 1.07 257468 28 2625 242326 1.07 244951 29 2896 256299 1.12 259195 30 2725 247403 1.09 250128 31 2530 240997 1.04 243527 32 2538 244986 1.03 247524 33 2880 272338 1.05 275218 34 2629 237749 1.09 240378 35 2746 240678 1.13 243424 36 2498 237240 1.04 239738 37 2354 224931 1.04 227285 38 2640 234233 1.11 236873 39 2723 225148 1.19 227871 40 2645 218988 1.19 221633 41 2600 212887 1.21 215487 42 2673 199791 1.32 202464 43 2803 206948 1.34 209751 44 2555 207861 1.21 210416 45 2461 192176 1.26 194637 46 2401 191499 1.24 193900 47 2524 198040 1.26 200564 48 2417 188430 1.27 190847 49 2435 191942 1.25 194377 50 2766 188619 1.45 191385 51 2403 176716 1.34 179119 52 2590 175490 1.45 178080 53 2933 192774 1.50 195707 54 2441 176787 1.36 179228 55 2363 177863 1.31 180226 56 2335 176532 1.31 178867 57 2625 166880 1.55 169505 58 2264 168522 1.33 170786 59 2016 167907 1.19 169923 60 2015 159824 1.25 161839 61 1649 160907 1.01 162556 62 1721 163881 1.04 165602 63 1758 166399 1.05 168157 64 1551 151691 1.01 153242 65 1665 158571 1.04 160236 66 1516 146501 1.02 148017 67 1616 157352 1.02 158968 68 1539 153675 0.99 155214 69 1536 148588 1.02 150124 70 1519 146790 1.02 148309 71 1576 149596 1.04 151172 72 1414 138441 1.01 139855 73 1380 139275 0.98 140655 74 1453 142527 1.01 143980 75 1323 135821 0.96 137144 76 1293 132482 0.97 133775 77 1431 137996 1.03 139427 78 1347 133232 1.00 134579 79 1299 131240 0.98 132539 80 1327 128055 1.03 129382 81 1297 123063 1.04 124360 82 1301 121304 1.06 122605 83 1274 123497 1.02 124771 84 1204 117758 1.01 118962 85 1270 127844 0.98 129114 86 1272 118650 1.06 119922 87 1328 117298 1.12 118626 88 1227 112716 1.08 113943 89 1299 119632 1.07 120931 90 1323 114580 1.14 115903 91 1277 116243 1.09 117520 92 1214 113473 1.06 114687 93 1230 108774 1.12 110004 94 1149 107736 1.06 108885 95 1227 109826 1.10 111053 96 1308 104630 1.23 105938 97 1162 103595 1.11 104757 98 983 100145 0.97 101128 99 870 0 100.00 870 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 97083 403714 19.39 500797 2 81496 339784 19.34 421280 3 81592 334536 19.61 416128 4 80129 316925 20.18 397054 5 21255 610462 3.36 631717 6 21125 847535 2.43 868660 7 23444 1136011 2.02 1159455 8 21005 1126795 1.83 1147800 9 23885 1065662 2.19 1089547 10 21764 1082175 1.97 1103939 11 21500 1062735 1.98 1084235 12 20858 989740 2.06 1010598 13 20044 1023249 1.92 1043293 14 20724 1027185 1.98 1047909 15 20207 1037289 1.91 1057496 16 18584 990310 1.84 1008894 17 20152 988098 2.00 1008250 18 19551 985584 1.95 1005135 19 17875 927288 1.89 945163 20 20275 966821 2.05 987096 21 19100 912599 2.05 931699 22 19659 892030 2.16 911689 23 19375 873433 2.17 892808 24 17934 837149 2.10 855083 25 19634 835799 2.30 855433 26 18018 828345 2.13 846363 27 19332 866551 2.18 885883 28 18051 843485 2.10 861536 29 18709 827062 2.21 845771 30 19547 802682 2.38 822229 31 18115 787444 2.25 805559 32 17491 768227 2.23 785718 33 18858 753829 2.44 772687 34 17613 747728 2.30 765341 35 18223 766106 2.32 784329 36 17359 763691 2.22 781050 37 17091 749563 2.23 766654 38 18106 772041 2.29 790147 39 18005 724275 2.43 742280 40 17072 743288 2.25 760360 41 17681 709633 2.43 727314 42 17452 715932 2.38 733384 43 17219 686683 2.45 703902 44 16219 687790 2.30 704009 45 17007 683486 2.43 700493 46 16364 687036 2.33 703400 47 15792 674476 2.29 690268 48 16217 659102 2.40 675319 49 15425 657232 2.29 672657 50 15683 650962 2.35 666645 51 15601 635500 2.40 651101 52 14730 606000 2.37 620730 53 14874 608344 2.39 623218 54 14082 591268 2.33 605350 55 14179 600081 2.31 614260 56 14151 592583 2.33 606734 57 13958 593213 2.30 607171 58 13093 580925 2.20 594018 59 13520 561813 2.35 575333 60 13314 570064 2.28 583378 61 13075 547119 2.33 560194 62 12738 543763 2.29 556501 63 12369 540555 2.24 552924 64 12611 526627 2.34 539238 65 11833 529012 2.19 540845 66 11855 513893 2.25 525748 67 11610 510538 2.22 522148 68 11654 521786 2.18 533440 69 11986 507751 2.31 519737 70 11424 496939 2.25 508363 71 11213 489345 2.24 500558 72 11783 483343 2.38 495126 73 11134 476866 2.28 488000 74 10913 476635 2.24 487548 75 10917 476672 2.24 487589 76 10596 461554 2.24 472150 77 11135 457495 2.38 468630 78 10867 458174 2.32 469041 79 10541 460609 2.24 471150 80 10738 445757 2.35 456495 81 10857 446922 2.37 457779 82 10592 441251 2.34 451843 83 10153 435745 2.28 445898 84 10628 434405 2.39 445033 85 9877 424326 2.27 434203 86 9915 422864 2.29 432779 87 9892 416162 2.32 426054 88 9463 407706 2.27 417169 89 9544 403756 2.31 413300 90 9674 404759 2.33 414433 91 9202 399920 2.25 409122 92 8956 395473 2.21 404429 93 8958 388108 2.26 397066 94 8513 381527 2.18 390040 95 8740 377658 2.26 386398 96 8453 374077 2.21 382530 97 8032 371190 2.12 379222 98 7354 353504 2.04 360858 99 5273 0 100.00 5273