Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-182_S17_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-182_S17_L003_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 31499315
Paired-end alignments with a unique best hit 18695914
Pairs without alignments under any condition 7572690
Pairs that did not map uniquely 5230711
Genomic sequence context not extractable (edges of chromosomes) 118815

Cytosine Methylation

Total C's analysed 597043765
Methylated C's in CpG context 17755173
Methylated C's in CHG context 2854933
Methylated C's in CHH context 9778664
Methylated C's in Unknown context 295540
Unmethylated C's in CpG context 66624620
Unmethylated C's in CHG context 128394175
Unmethylated C's in CHH context 371636200
Unmethylated C's in Unknown context 3116202
Percentage methylation (CpG context) 21.0%
Percentage methylation (CHG context) 2.2%
Percentage methylation (CHH context) 2.6%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 9176147 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 9400952 original bottom strand