EPI-181_S16_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 11230499 lines in total Total number of methylation call strings processed: 22460998 Final Cytosine Methylation Report ================================= Total number of C's analysed: 256492616 Total methylated C's in CpG context: 9677056 Total methylated C's in CHG context: 1372992 Total methylated C's in CHH context: 5234750 Total C to T conversions in CpG context: 26122561 Total C to T conversions in CHG context: 53795074 Total C to T conversions in CHH context: 160290183 C methylated in CpG context: 27.0% C methylated in CHG context: 2.5% C methylated in CHH context: 3.2%