CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 176898 285136 38.29 462034 2 169803 317134 34.87 486937 3 161533 278040 36.75 439573 4 172207 225415 43.31 397622 5 166855 195919 45.99 362774 6 168920 165317 50.54 334237 7 187058 163349 53.38 350407 8 88135 188800 31.83 276935 9 79429 175369 31.17 254798 10 78646 170060 31.62 248706 11 82201 176134 31.82 258335 12 79326 178624 30.75 257950 13 77869 181868 29.98 259737 14 73951 182478 28.84 256429 15 72449 184318 28.22 256767 16 67092 181738 26.96 248830 17 63591 178824 26.23 242415 18 65401 182098 26.42 247499 19 64394 182823 26.05 247217 20 64837 185670 25.88 250507 21 64578 187474 25.62 252052 22 63729 184298 25.69 248027 23 63156 183567 25.60 246723 24 62494 183867 25.37 246361 25 61416 182415 25.19 243831 26 62066 181035 25.53 243101 27 62390 185854 25.13 248244 28 63564 184603 25.61 248167 29 61754 186673 24.86 248427 30 60661 186424 24.55 247085 31 62106 182729 25.37 244835 32 60683 178820 25.34 239503 33 61357 182806 25.13 244163 34 62426 181155 25.63 243581 35 61118 180927 25.25 242045 36 60766 184690 24.76 245456 37 59111 179469 24.78 238580 38 58219 180069 24.43 238288 39 60609 182418 24.94 243027 40 60074 180753 24.94 240827 41 59374 179958 24.81 239332 42 61475 183056 25.14 244531 43 60092 181362 24.89 241454 44 59897 179777 24.99 239674 45 60998 180872 25.22 241870 46 61273 182798 25.10 244071 47 60030 179484 25.06 239514 48 59851 179823 24.97 239674 49 61646 179811 25.53 241457 50 59949 182236 24.75 242185 51 59995 181092 24.89 241087 52 60708 186248 24.58 246956 53 59196 178727 24.88 237923 54 58498 178770 24.65 237268 55 58099 175349 24.89 233448 56 58061 175126 24.90 233187 57 59240 177168 25.06 236408 58 59594 177121 25.18 236715 59 60456 175024 25.67 235480 60 59258 176329 25.15 235587 61 59725 173616 25.60 233341 62 58965 175231 25.18 234196 63 58557 175135 25.06 233692 64 57523 173733 24.87 231256 65 58404 172099 25.34 230503 66 59142 173591 25.41 232733 67 58235 169325 25.59 227560 68 57218 169645 25.22 226863 69 56666 168473 25.17 225139 70 56498 168091 25.16 224589 71 55208 165454 25.02 220662 72 55099 166424 24.87 221523 73 55217 163188 25.28 218405 74 54304 162641 25.03 216945 75 52973 162389 24.60 215362 76 52534 162176 24.47 214710 77 53752 159648 25.19 213400 78 53734 161419 24.97 215153 79 52266 158395 24.81 210661 80 51782 158330 24.64 210112 81 51139 157526 24.51 208665 82 49823 156063 24.20 205886 83 51482 157407 24.65 208889 84 50602 156252 24.46 206854 85 50843 154393 24.77 205236 86 49318 152965 24.38 202283 87 48328 150412 24.32 198740 88 49065 147756 24.93 196821 89 47282 148394 24.16 195676 90 47514 149296 24.14 196810 91 47141 146668 24.32 193809 92 46310 145079 24.20 191389 93 46187 146404 23.98 192591 94 46529 144346 24.38 190875 95 45275 142904 24.06 188179 96 45264 144397 23.87 189661 97 44353 138309 24.28 182662 98 41478 130448 24.13 171926 99 32969 104293 24.02 137262 100 42526 130947 24.51 173473 101 39029 130108 23.08 169137 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 248961 354443 41.26 603404 2 145048 338993 29.97 484041 3 61668 328540 15.80 390208 4 34548 331523 9.44 366071 5 23106 305485 7.03 328591 6 20196 291186 6.49 311382 7 15668 364000 4.13 379668 8 7302 395526 1.81 402828 9 6179 375748 1.62 381927 10 5899 360633 1.61 366532 11 6188 364899 1.67 371087 12 5927 367486 1.59 373413 13 5594 355088 1.55 360682 14 5316 357634 1.46 362950 15 5321 367323 1.43 372644 16 4757 366247 1.28 371004 17 5188 362633 1.41 367821 18 4634 362303 1.26 366937 19 4234 362342 1.16 366576 20 4396 380176 1.14 384572 21 4359 385917 1.12 390276 22 4487 378868 1.17 383355 23 4729 384706 1.21 389435 24 4360 389351 1.11 393711 25 4837 375757 1.27 380594 26 5526 379759 1.43 385285 27 4276 387134 1.09 391410 28 4238 384789 1.09 389027 29 4923 389517 1.25 394440 30 4046 390361 1.03 394407 31 4096 383205 1.06 387301 32 4473 386678 1.14 391151 33 4256 387666 1.09 391922 34 4179 382064 1.08 386243 35 4881 385409 1.25 390290 36 4372 386968 1.12 391340 37 4186 375553 1.10 379739 38 4769 384005 1.23 388774 39 4359 381131 1.13 385490 40 4213 380026 1.10 384239 41 4321 380658 1.12 384979 42 4177 383095 1.08 387272 43 4134 376226 1.09 380360 44 4127 381977 1.07 386104 45 4263 380404 1.11 384667 46 4284 377953 1.12 382237 47 4427 379191 1.15 383618 48 4103 387931 1.05 392034 49 4352 378353 1.14 382705 50 4698 377669 1.23 382367 51 4217 381704 1.09 385921 52 4379 379961 1.14 384340 53 4180 377135 1.10 381315 54 4582 384548 1.18 389130 55 4427 377358 1.16 381785 56 4426 380527 1.15 384953 57 4558 381129 1.18 385687 58 4642 377239 1.22 381881 59 4835 380392 1.26 385227 60 4659 383237 1.20 387896 61 4725 376146 1.24 380871 62 4995 378358 1.30 383353 63 5116 375351 1.34 380467 64 5051 373461 1.33 378512 65 5841 372794 1.54 378635 66 4945 368383 1.32 373328 67 5086 360435 1.39 365521 68 5440 364453 1.47 369893 69 4793 362299 1.31 367092 70 4693 355020 1.30 359713 71 4748 356252 1.32 361000 72 4642 357062 1.28 361704 73 4889 351496 1.37 356385 74 5145 352769 1.44 357914 75 4663 351789 1.31 356452 76 5044 342406 1.45 347450 77 5098 344133 1.46 349231 78 4576 340287 1.33 344863 79 4880 332353 1.45 337233 80 4639 334251 1.37 338890 81 4619 331568 1.37 336187 82 4570 325951 1.38 330521 83 4809 331635 1.43 336444 84 5036 329833 1.50 334869 85 4786 324643 1.45 329429 86 4825 325532 1.46 330357 87 5255 325150 1.59 330405 88 6091 313483 1.91 319574 89 4909 318081 1.52 322990 90 4606 316560 1.43 321166 91 4710 312391 1.49 317101 92 4909 314317 1.54 319226 93 5044 310603 1.60 315647 94 4871 304970 1.57 309841 95 5143 304433 1.66 309576 96 5103 302131 1.66 307234 97 4970 275118 1.77 280088 98 4551 253956 1.76 258507 99 2751 164862 1.64 167613 100 3346 166434 1.97 169780 101 6430 274859 2.29 281289 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 285838 467617 37.94 753455 2 158623 505926 23.87 664549 3 91058 582551 13.52 673609 4 83261 614661 11.93 697922 5 77528 722148 9.69 799676 6 64427 783971 7.59 848398 7 52415 993321 5.01 1045736 8 38291 1072725 3.45 1111016 9 29032 985184 2.86 1014216 10 29083 957652 2.95 986735 11 36037 963458 3.61 999495 12 30772 977667 3.05 1008439 13 34460 996335 3.34 1030795 14 37148 1021975 3.51 1059123 15 31892 1052240 2.94 1084132 16 31278 1066994 2.85 1098272 17 35794 1075149 3.22 1110943 18 30182 1115751 2.63 1145933 19 30612 1136985 2.62 1167597 20 35244 1173336 2.92 1208580 21 30891 1174504 2.56 1205395 22 33869 1179128 2.79 1212997 23 35869 1175985 2.96 1211854 24 31004 1183083 2.55 1214087 25 34894 1182285 2.87 1217179 26 36143 1196003 2.93 1232146 27 31553 1202912 2.56 1234465 28 31066 1210190 2.50 1241256 29 35954 1207158 2.89 1243112 30 31247 1194987 2.55 1226234 31 31755 1181415 2.62 1213170 32 35174 1181779 2.89 1216953 33 30874 1188908 2.53 1219782 34 35001 1195508 2.84 1230509 35 35803 1186324 2.93 1222127 36 31125 1197843 2.53 1228968 37 30639 1190929 2.51 1221568 38 35937 1198278 2.91 1234215 39 30772 1191853 2.52 1222625 40 31656 1190009 2.59 1221665 41 36212 1192408 2.95 1228620 42 32594 1200955 2.64 1233549 43 34177 1189656 2.79 1223833 44 35229 1198826 2.85 1234055 45 32777 1188768 2.68 1221545 46 32137 1190538 2.63 1222675 47 34311 1189351 2.80 1223662 48 30123 1190564 2.47 1220687 49 30842 1179190 2.55 1210032 50 34478 1177742 2.84 1212220 51 29845 1167682 2.49 1197527 52 31891 1165536 2.66 1197427 53 34751 1160337 2.91 1195088 54 30585 1163473 2.56 1194058 55 31427 1157903 2.64 1189330 56 34678 1157982 2.91 1192660 57 29992 1170639 2.50 1200631 58 30911 1169319 2.58 1200230 59 34782 1170390 2.89 1205172 60 29850 1156819 2.52 1186669 61 32002 1150169 2.71 1182171 62 34026 1139555 2.90 1173581 63 29628 1133695 2.55 1163323 64 31814 1127310 2.74 1159124 65 33218 1121358 2.88 1154576 66 29574 1116304 2.58 1145878 67 29462 1109621 2.59 1139083 68 32146 1104820 2.83 1136966 69 28969 1102776 2.56 1131745 70 29202 1094957 2.60 1124159 71 32391 1094537 2.87 1126928 72 28857 1089858 2.58 1118715 73 31271 1077918 2.82 1109189 74 32308 1074877 2.92 1107185 75 28703 1067435 2.62 1096138 76 30351 1056931 2.79 1087282 77 32520 1053725 2.99 1086245 78 27431 1048828 2.55 1076259 79 29084 1037303 2.73 1066387 80 31678 1036674 2.97 1068352 81 28899 1024285 2.74 1053184 82 29633 1015771 2.83 1045404 83 31558 1015980 3.01 1047538 84 29280 1003941 2.83 1033221 85 27819 992938 2.73 1020757 86 29831 984190 2.94 1014021 87 28228 974540 2.82 1002768 88 30449 951370 3.10 981819 89 30391 963096 3.06 993487 90 26435 961073 2.68 987508 91 27259 950400 2.79 977659 92 29294 946815 3.00 976109 93 26365 938844 2.73 965209 94 26284 930412 2.75 956696 95 29070 920042 3.06 949112 96 25147 902798 2.71 927945 97 25047 880240 2.77 905287 98 26424 820756 3.12 847180 99 15641 574436 2.65 590077 100 17190 511641 3.25 528831 101 25413 830461 2.97 855874 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 157045 181248 46.42 338293 2 135994 157176 46.39 293170 3 144713 175970 45.13 320683 4 132216 198180 40.02 330396 5 59168 259290 18.58 318458 6 35868 140706 20.31 176574 7 31773 152028 17.29 183801 8 33034 142482 18.82 175516 9 29371 122773 19.30 152144 10 31589 135670 18.89 167259 11 33496 132779 20.14 166275 12 32981 128270 20.45 161251 13 33927 123197 21.59 157124 14 35331 126403 21.85 161734 15 34315 116328 22.78 150643 16 32159 112237 22.27 144396 17 38466 120628 24.18 159094 18 37465 115165 24.55 152630 19 35545 113873 23.79 149418 20 33163 109741 23.21 142904 21 34588 107434 24.35 142022 22 34658 112486 23.55 147144 23 33200 106305 23.80 139505 24 31022 103656 23.03 134678 25 34164 107024 24.20 141188 26 31102 102550 23.27 133652 27 33539 103688 24.44 137227 28 31058 98544 23.96 129602 29 32313 102659 23.94 134972 30 31192 95791 24.56 126983 31 29899 99032 23.19 128931 32 29335 93704 23.84 123039 33 32828 94507 25.78 127335 34 31141 97722 24.17 128863 35 37597 103603 26.63 141200 36 31361 93230 25.17 124591 37 31744 96644 24.73 128388 38 29188 92478 23.99 121666 39 30114 90746 24.92 120860 40 32851 91387 26.44 124238 41 28821 88712 24.52 117533 42 29262 90736 24.39 119998 43 28823 89432 24.37 118255 44 27499 86665 24.09 114164 45 33621 93811 26.38 127432 46 26901 81892 24.73 108793 47 27518 84046 24.67 111564 48 27226 82636 24.78 109862 49 26269 86072 23.38 112341 50 25079 78509 24.21 103588 51 25183 77400 24.55 102583 52 25547 79478 24.32 105025 53 25891 77321 25.09 103212 54 24978 76899 24.52 101877 55 25299 74270 25.41 99569 56 23246 73380 24.06 96626 57 24507 74089 24.86 98596 58 23936 74048 24.43 97984 59 22588 69024 24.66 91612 60 23365 69434 25.18 92799 61 21147 68435 23.61 89582 62 21202 65501 24.45 86703 63 22552 64977 25.77 87529 64 21275 65637 24.48 86912 65 20713 62005 25.04 82718 66 21974 64681 25.36 86655 67 20516 65250 23.92 85766 68 22592 66133 25.46 88725 69 20407 62337 24.66 82744 70 19765 61247 24.40 81012 71 20164 57270 26.04 77434 72 19111 56515 25.27 75626 73 18948 57825 24.68 76773 74 17235 56231 23.46 73466 75 18149 56319 24.37 74468 76 18330 53918 25.37 72248 77 17722 54760 24.45 72482 78 17959 54538 24.77 72497 79 16956 52089 24.56 69045 80 16638 51746 24.33 68384 81 16583 51402 24.39 67985 82 16781 51859 24.45 68640 83 16589 49245 25.20 65834 84 18536 52895 25.95 71431 85 16005 50201 24.17 66206 86 15590 49086 24.10 64676 87 15832 48250 24.71 64082 88 15733 48232 24.60 63965 89 16378 48241 25.35 64619 90 16164 47520 25.38 63684 91 15413 46524 24.88 61937 92 14876 46058 24.41 60934 93 14942 45404 24.76 60346 94 15324 45345 25.26 60669 95 15042 44592 25.22 59634 96 14197 44377 24.24 58574 97 16327 46084 26.16 62411 98 13936 41983 24.92 55919 99 12560 0 100.00 12560 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 46136 225773 16.97 271909 2 47685 233131 16.98 280816 3 44074 238206 15.61 282280 4 47149 252301 15.75 299450 5 5558 461351 1.19 466909 6 4344 570545 0.76 574889 7 2697 316761 0.84 319458 8 2806 341267 0.82 344073 9 2515 285951 0.87 288466 10 2469 273030 0.90 275499 11 3554 363677 0.97 367231 12 2646 290157 0.90 292803 13 2631 289022 0.90 291653 14 2670 277463 0.95 280133 15 2746 270609 1.00 273355 16 2437 251234 0.96 253671 17 2662 267077 0.99 269739 18 2982 236703 1.24 239685 19 2518 237034 1.05 239552 20 2533 234105 1.07 236638 21 3135 222264 1.39 225399 22 2674 244559 1.08 247233 23 2638 242940 1.07 245578 24 2367 217986 1.07 220353 25 2429 222801 1.08 225230 26 2519 233724 1.07 236243 27 2349 217953 1.07 220302 28 2326 208384 1.10 210710 29 2613 223327 1.16 225940 30 2517 213142 1.17 215659 31 2263 206138 1.09 208401 32 2320 209901 1.09 212221 33 2493 243449 1.01 245942 34 2261 206284 1.08 208545 35 2419 211218 1.13 213637 36 2324 208910 1.10 211234 37 2217 195393 1.12 197610 38 2447 207690 1.16 210137 39 2301 194163 1.17 196464 40 2283 190209 1.19 192492 41 2333 186296 1.24 188629 42 2356 174722 1.33 177078 43 2445 181568 1.33 184013 44 2237 180626 1.22 182863 45 2118 166277 1.26 168395 46 2158 166707 1.28 168865 47 2202 172716 1.26 174918 48 2229 164404 1.34 166633 49 2254 169774 1.31 172028 50 2341 165315 1.40 167656 51 2109 155735 1.34 157844 52 2271 153937 1.45 156208 53 2605 171366 1.50 173971 54 2207 156026 1.39 158233 55 2200 157357 1.38 159557 56 2093 155362 1.33 157455 57 2328 148060 1.55 150388 58 2070 149593 1.36 151663 59 1815 149715 1.20 151530 60 1852 142961 1.28 144813 61 1545 143733 1.06 145278 62 1579 149647 1.04 151226 63 1583 148844 1.05 150427 64 1470 134477 1.08 135947 65 1528 143085 1.06 144613 66 1393 130689 1.05 132082 67 1510 143057 1.04 144567 68 1402 138367 1.00 139769 69 1474 134069 1.09 135543 70 1438 134012 1.06 135450 71 1323 136612 0.96 137935 72 1317 124834 1.04 126151 73 1292 126222 1.01 127514 74 1257 128282 0.97 129539 75 1299 122648 1.05 123947 76 1194 119913 0.99 121107 77 1391 126425 1.09 127816 78 1247 120735 1.02 121982 79 1217 119728 1.01 120945 80 1125 115051 0.97 116176 81 1269 111723 1.12 112992 82 1235 110040 1.11 111275 83 1173 112886 1.03 114059 84 1156 107140 1.07 108296 85 1218 118557 1.02 119775 86 1162 108815 1.06 109977 87 1238 107583 1.14 108821 88 1093 102747 1.05 103840 89 1196 109551 1.08 110747 90 1158 106642 1.07 107800 91 1167 109400 1.06 110567 92 1156 104358 1.10 105514 93 1083 100934 1.06 102017 94 1076 99107 1.07 100183 95 1166 100964 1.14 102130 96 1218 96359 1.25 97577 97 1140 96426 1.17 97566 98 939 93296 1.00 94235 99 806 0 100.00 806 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 76037 310668 19.66 386705 2 63594 257145 19.83 320739 3 64615 257104 20.08 321719 4 64547 247486 20.69 312033 5 18685 496953 3.62 515638 6 18540 686272 2.63 704812 7 19722 927310 2.08 947032 8 18268 916812 1.95 935080 9 20740 865209 2.34 885949 10 18976 881978 2.11 900954 11 18856 868615 2.12 887471 12 18118 811931 2.18 830049 13 17749 840181 2.07 857930 14 18077 844678 2.10 862755 15 17764 864824 2.01 882588 16 16341 829419 1.93 845760 17 17643 829110 2.08 846753 18 17047 826486 2.02 843533 19 15684 769803 2.00 785487 20 17669 814974 2.12 832643 21 16497 762841 2.12 779338 22 17237 741876 2.27 759113 23 16634 730107 2.23 746741 24 15802 701339 2.20 717141 25 16843 699006 2.35 715849 26 15802 696041 2.22 711843 27 16761 737106 2.22 753867 28 15440 707418 2.14 722858 29 16256 693306 2.29 709562 30 16587 672868 2.41 689455 31 15668 659153 2.32 674821 32 15107 640912 2.30 656019 33 16465 634441 2.53 650906 34 15214 630893 2.35 646107 35 16158 651269 2.42 667427 36 15113 649096 2.28 664209 37 14781 634555 2.28 649336 38 15858 661163 2.34 677021 39 15663 613079 2.49 628742 40 14898 638168 2.28 653066 41 15504 603681 2.50 619185 42 15372 613650 2.44 629022 43 15000 584251 2.50 599251 44 14045 583306 2.35 597351 45 14768 579863 2.48 594631 46 14264 585496 2.38 599760 47 13592 575531 2.31 589123 48 14162 562647 2.46 576809 49 13543 569125 2.32 582668 50 13493 557626 2.36 571119 51 13741 544208 2.46 557949 52 12593 516628 2.38 529221 53 12835 521336 2.40 534171 54 12330 507742 2.37 520072 55 12243 522122 2.29 534365 56 12440 507842 2.39 520282 57 12015 518271 2.27 530286 58 11241 501030 2.19 512271 59 11757 483619 2.37 495376 60 11574 492846 2.29 504420 61 11476 473617 2.37 485093 62 11082 466935 2.32 478017 63 10805 468729 2.25 479534 64 10841 455265 2.33 466106 65 10469 462086 2.22 472555 66 10505 445762 2.30 456267 67 10077 443688 2.22 453765 68 10352 458145 2.21 468497 69 10519 446662 2.30 457181 70 9824 432611 2.22 442435 71 9796 425680 2.25 435476 72 10201 423852 2.35 434053 73 9802 417505 2.29 427307 74 9471 417789 2.22 427260 75 9599 417439 2.25 427038 76 9077 402211 2.21 411288 77 9829 400079 2.40 409908 78 9582 402875 2.32 412457 79 9201 407710 2.21 416911 80 9498 394346 2.35 403844 81 9653 396215 2.38 405868 82 9180 387860 2.31 397040 83 8920 385606 2.26 394526 84 9320 382963 2.38 392283 85 8633 374952 2.25 383585 86 8524 374630 2.22 383154 87 8768 369987 2.31 378755 88 8208 359758 2.23 367966 89 8448 357627 2.31 366075 90 8391 358437 2.29 366828 91 8050 352908 2.23 360958 92 7800 350462 2.18 358262 93 7797 346404 2.20 354201 94 7466 340872 2.14 348338 95 7792 334915 2.27 342707 96 7610 330514 2.25 338124 97 6926 330331 2.05 337257 98 6515 314856 2.03 321371 99 4690 0 100.00 4690