Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-181_S16_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-181_S16_L003_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 27212918
Paired-end alignments with a unique best hit 15781730
Pairs without alignments under any condition 6927718
Pairs that did not map uniquely 4503470
Genomic sequence context not extractable (edges of chromosomes) 94756

Cytosine Methylation

Total C's analysed 506989418
Methylated C's in CpG context 16154307
Methylated C's in CHG context 2461238
Methylated C's in CHH context 8464589
Methylated C's in Unknown context 250378
Unmethylated C's in CpG context 61211254
Unmethylated C's in CHG context 109653850
Unmethylated C's in CHH context 309044180
Unmethylated C's in Unknown context 2592791
Percentage methylation (CpG context) 20.9%
Percentage methylation (CHG context) 2.2%
Percentage methylation (CHH context) 2.7%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 7692489 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 7994485 original bottom strand