EPI-176_S15_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 13432979 lines in total Total number of methylation call strings processed: 26865958 Final Cytosine Methylation Report ================================= Total number of C's analysed: 295683002 Total methylated C's in CpG context: 10357251 Total methylated C's in CHG context: 1395892 Total methylated C's in CHH context: 4964362 Total C to T conversions in CpG context: 31870324 Total C to T conversions in CHG context: 60641867 Total C to T conversions in CHH context: 186453306 C methylated in CpG context: 24.5% C methylated in CHG context: 2.3% C methylated in CHH context: 2.6%