CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 180791 298607 37.71 479398 2 170511 339623 33.42 510134 3 166178 328152 33.62 494330 4 175478 295589 37.25 471067 5 174079 258939 40.20 433018 6 177123 213961 45.29 391084 7 196931 205406 48.95 402337 8 95969 243951 28.23 339920 9 85755 226517 27.46 312272 10 85736 221423 27.91 307159 11 89243 224894 28.41 314137 12 86839 224852 27.86 311691 13 86091 225136 27.66 311227 14 81596 229622 26.22 311218 15 80020 228111 25.97 308131 16 75077 230596 24.56 305673 17 71719 224599 24.20 296318 18 74159 229199 24.45 303358 19 71859 228091 23.96 299950 20 72965 231590 23.96 304555 21 73058 233957 23.80 307015 22 71645 230593 23.70 302238 23 71880 228663 23.92 300543 24 70884 230307 23.53 301191 25 69042 226980 23.32 296022 26 69847 227577 23.48 297424 27 69907 231143 23.22 301050 28 70869 232330 23.37 303199 29 68928 230637 23.01 299565 30 67935 230016 22.80 297951 31 68869 228465 23.16 297334 32 67983 225155 23.19 293138 33 68363 229399 22.96 297762 34 69021 227822 23.25 296843 35 68439 228249 23.07 296688 36 68306 231776 22.76 300082 37 66836 225757 22.84 292593 38 65701 225277 22.58 290978 39 68101 227719 23.02 295820 40 66882 224983 22.92 291865 41 66580 225362 22.81 291942 42 68677 228181 23.13 296858 43 67721 227763 22.92 295484 44 66609 225217 22.82 291826 45 68262 225677 23.22 293939 46 67708 226712 23.00 294420 47 67052 223501 23.08 290553 48 66786 224925 22.89 291711 49 69542 225841 23.54 295383 50 67476 226248 22.97 293724 51 67224 226553 22.88 293777 52 67754 228076 22.90 295830 53 66276 220870 23.08 287146 54 65668 223446 22.71 289114 55 64764 219924 22.75 284688 56 65028 219137 22.88 284165 57 66785 222538 23.08 289323 58 67489 222844 23.25 290333 59 67930 220594 23.54 288524 60 66761 221845 23.13 288606 61 66884 218077 23.47 284961 62 65781 218181 23.17 283962 63 64726 218932 22.82 283658 64 63911 216090 22.83 280001 65 65166 214178 23.33 279344 66 66282 215204 23.55 281486 67 64742 211182 23.46 275924 68 63436 211848 23.04 275284 69 62920 210539 23.01 273459 70 62736 209298 23.06 272034 71 60791 205840 22.80 266631 72 61040 205526 22.90 266566 73 60530 202894 22.98 263424 74 60149 202534 22.90 262683 75 58146 201429 22.40 259575 76 58580 200231 22.63 258811 77 58991 197565 22.99 256556 78 58617 199116 22.74 257733 79 57952 195499 22.87 253451 80 57121 195700 22.59 252821 81 55973 193715 22.42 249688 82 55298 190995 22.45 246293 83 55799 192061 22.51 247860 84 55447 191228 22.48 246675 85 54544 187518 22.53 242062 86 53684 184232 22.56 237916 87 52142 184496 22.03 236638 88 52500 180450 22.54 232950 89 51564 180518 22.22 232082 90 51147 180605 22.07 231752 91 50497 177691 22.13 228188 92 50147 176722 22.10 226869 93 50211 176455 22.15 226666 94 49350 174149 22.08 223499 95 48648 171443 22.10 220091 96 48484 171430 22.05 219914 97 47436 166922 22.13 214358 98 44444 157084 22.05 201528 99 34960 124722 21.89 159682 100 45347 156810 22.43 202157 101 42175 156855 21.19 199030 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 220640 446287 33.08 666927 2 123858 439120 22.00 562978 3 57058 427140 11.78 484198 4 34658 412362 7.75 447020 5 24471 370532 6.20 395003 6 18884 343033 5.22 361917 7 15550 432212 3.47 447762 8 7361 471558 1.54 478919 9 6352 446170 1.40 452522 10 6255 430008 1.43 436263 11 6565 427573 1.51 434138 12 6315 425701 1.46 432016 13 6148 413396 1.47 419544 14 5536 413960 1.32 419496 15 5536 424527 1.29 430063 16 5117 424565 1.19 429682 17 5694 419006 1.34 424700 18 5102 418007 1.21 423109 19 4648 420325 1.09 424973 20 4741 438164 1.07 442905 21 4775 441629 1.07 446404 22 4982 435621 1.13 440603 23 4968 441837 1.11 446805 24 4879 448158 1.08 453037 25 5230 434948 1.19 440178 26 5565 437601 1.26 443166 27 4718 446399 1.05 451117 28 4681 445680 1.04 450361 29 5038 449792 1.11 454830 30 4622 450311 1.02 454933 31 4504 442263 1.01 446767 32 5119 448436 1.13 453555 33 4464 449436 0.98 453900 34 4484 442279 1.00 446763 35 5084 443555 1.13 448639 36 4699 448258 1.04 452957 37 4655 433336 1.06 437991 38 4860 441666 1.09 446526 39 4692 439504 1.06 444196 40 4431 440462 1.00 444893 41 4650 441013 1.04 445663 42 4486 442433 1.00 446919 43 4497 433313 1.03 437810 44 4744 439802 1.07 444546 45 4664 438374 1.05 443038 46 4652 436421 1.05 441073 47 4850 439971 1.09 444821 48 4515 449260 0.99 453775 49 4645 438841 1.05 443486 50 4852 436830 1.10 441682 51 4723 440433 1.06 445156 52 4797 440824 1.08 445621 53 4713 435916 1.07 440629 54 4991 443906 1.11 448897 55 4846 436205 1.10 441051 56 5143 443008 1.15 448151 57 5181 439754 1.16 444935 58 5247 436908 1.19 442155 59 5414 438057 1.22 443471 60 5309 440226 1.19 445535 61 5511 433065 1.26 438576 62 5578 435073 1.27 440651 63 5746 429917 1.32 435663 64 5484 427258 1.27 432742 65 6268 426531 1.45 432799 66 5690 420078 1.34 425768 67 5730 412803 1.37 418533 68 5896 414773 1.40 420669 69 5474 413782 1.31 419256 70 5449 405874 1.32 411323 71 5394 405907 1.31 411301 72 5308 405263 1.29 410571 73 5377 401423 1.32 406800 74 5623 398182 1.39 403805 75 5389 397513 1.34 402902 76 5812 385875 1.48 391687 77 5660 387135 1.44 392795 78 5321 381583 1.38 386904 79 5720 374304 1.51 380024 80 5639 376059 1.48 381698 81 5374 372924 1.42 378298 82 5380 365540 1.45 370920 83 5802 367392 1.55 373194 84 5745 367848 1.54 373593 85 5394 362827 1.46 368221 86 5430 361721 1.48 367151 87 6269 360930 1.71 367199 88 6894 346675 1.95 353569 89 5438 352880 1.52 358318 90 5440 352539 1.52 357979 91 5511 347409 1.56 352920 92 5659 347908 1.60 353567 93 5717 343267 1.64 348984 94 5418 337499 1.58 342917 95 5523 336314 1.62 341837 96 5743 332467 1.70 338210 97 5485 303325 1.78 308810 98 5069 280312 1.78 285381 99 3270 185306 1.73 188576 100 3809 187928 1.99 191737 101 7089 304054 2.28 311143 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 317558 604371 34.44 921929 2 165699 655539 20.18 821238 3 94643 714097 11.70 808740 4 83620 759054 9.92 842674 5 78526 892769 8.08 971295 6 64492 983846 6.15 1048338 7 52001 1227158 4.07 1279159 8 35520 1339334 2.58 1374854 9 28240 1222112 2.26 1250352 10 27966 1172769 2.33 1200735 11 33683 1171564 2.79 1205247 12 29798 1180484 2.46 1210282 13 31995 1198280 2.60 1230275 14 34231 1228338 2.71 1262569 15 30029 1258240 2.33 1288269 16 29446 1273127 2.26 1302573 17 33258 1288766 2.52 1322024 18 29322 1335903 2.15 1365225 19 29624 1365593 2.12 1395217 20 33229 1404408 2.31 1437637 21 29586 1406625 2.06 1436211 22 31506 1413986 2.18 1445492 23 33837 1414367 2.34 1448204 24 29914 1411307 2.08 1441221 25 32140 1413181 2.22 1445321 26 33686 1432111 2.30 1465797 27 30373 1442568 2.06 1472941 28 30013 1451357 2.03 1481370 29 33137 1449313 2.24 1482450 30 29285 1439629 1.99 1468914 31 30181 1427908 2.07 1458089 32 32862 1418925 2.26 1451787 33 29466 1428436 2.02 1457902 34 31213 1436627 2.13 1467840 35 33132 1429021 2.27 1462153 36 29453 1440585 2.00 1470038 37 28978 1429794 1.99 1458772 38 32928 1438054 2.24 1470982 39 29683 1430985 2.03 1460668 40 29684 1423669 2.04 1453353 41 33661 1430768 2.30 1464429 42 30307 1432332 2.07 1462639 43 31309 1423013 2.15 1454322 44 32614 1432563 2.23 1465177 45 30515 1421486 2.10 1452001 46 29943 1426789 2.06 1456732 47 31846 1429088 2.18 1460934 48 28364 1430820 1.94 1459184 49 29097 1421622 2.01 1450719 50 31786 1414908 2.20 1446694 51 28373 1405134 1.98 1433507 52 29693 1403075 2.07 1432768 53 31865 1393297 2.24 1425162 54 28664 1390637 2.02 1419301 55 29126 1386981 2.06 1416107 56 31799 1387625 2.24 1419424 57 28149 1392387 1.98 1420536 58 28586 1392609 2.01 1421195 59 32174 1391931 2.26 1424105 60 27697 1380665 1.97 1408362 61 29894 1371176 2.13 1401070 62 31058 1356751 2.24 1387809 63 28284 1348002 2.06 1376286 64 29024 1341552 2.12 1370576 65 30443 1332179 2.23 1362622 66 27860 1326336 2.06 1354196 67 27699 1315105 2.06 1342804 68 29486 1307917 2.20 1337403 69 27215 1303210 2.05 1330425 70 27381 1292122 2.08 1319503 71 29708 1286791 2.26 1316499 72 26765 1286998 2.04 1313763 73 28323 1266091 2.19 1294414 74 29314 1262319 2.27 1291633 75 26196 1252531 2.05 1278727 76 28053 1240073 2.21 1268126 77 29374 1233352 2.33 1262726 78 25602 1224486 2.05 1250088 79 26935 1215368 2.17 1242303 80 28210 1210764 2.28 1238974 81 26101 1192091 2.14 1218192 82 26569 1182542 2.20 1209111 83 28178 1180222 2.33 1208400 84 26112 1165875 2.19 1191987 85 25289 1152328 2.15 1177617 86 26522 1141165 2.27 1167687 87 26159 1124033 2.27 1150192 88 28664 1098022 2.54 1126686 89 26531 1108564 2.34 1135095 90 23724 1105029 2.10 1128753 91 24430 1091445 2.19 1115875 92 25614 1085244 2.31 1110858 93 23636 1076661 2.15 1100297 94 23759 1066098 2.18 1089857 95 26060 1052240 2.42 1078300 96 22753 1033001 2.16 1055754 97 23015 1007384 2.23 1030399 98 23978 937963 2.49 961941 99 14733 653268 2.21 668001 100 14933 582246 2.50 597179 101 23490 949526 2.41 973016 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 160813 212757 43.05 373570 2 143255 192696 42.64 335951 3 154564 215928 41.72 370492 4 145264 245849 37.14 391113 5 62009 320576 16.21 382585 6 36752 170778 17.71 207530 7 32868 180072 15.44 212940 8 34333 168946 16.89 203279 9 30457 149260 16.95 179717 10 33417 164428 16.89 197845 11 35473 160100 18.14 195573 12 34039 153439 18.16 187478 13 34852 149629 18.89 184481 14 36634 153530 19.26 190164 15 36128 141774 20.31 177902 16 34201 136737 20.01 170938 17 40967 145428 21.98 186395 18 39186 141212 21.72 180398 19 37179 137736 21.26 174915 20 34160 133765 20.34 167925 21 36514 131314 21.76 167828 22 35473 134231 20.90 169704 23 34377 128627 21.09 163004 24 32224 125030 20.49 157254 25 35501 129787 21.48 165288 26 32743 122786 21.05 155529 27 34402 123454 21.79 157856 28 32486 117659 21.64 150145 29 33056 123145 21.16 156201 30 32060 115449 21.73 147509 31 31088 119523 20.64 150611 32 30184 112194 21.20 142378 33 32953 112986 22.58 145939 34 32030 117171 21.47 149201 35 37425 122282 23.43 159707 36 31693 111334 22.16 143027 37 32985 113240 22.56 146225 38 29525 109999 21.16 139524 39 31066 107952 22.35 139018 40 32635 107296 23.32 139931 41 29809 105580 22.02 135389 42 29359 107209 21.50 136568 43 29345 105606 21.74 134951 44 27381 100712 21.38 128093 45 32380 108434 22.99 140814 46 27162 96366 21.99 123528 47 27328 98545 21.71 125873 48 27383 98741 21.71 126124 49 26806 100915 20.99 127721 50 25206 91657 21.57 116863 51 24994 90761 21.59 115755 52 25604 92265 21.72 117869 53 25673 89854 22.22 115527 54 24910 89697 21.74 114607 55 25122 87239 22.36 112361 56 23544 85260 21.64 108804 57 23964 85697 21.85 109661 58 23539 85408 21.61 108947 59 22402 80122 21.85 102524 60 22960 79296 22.45 102256 61 21109 78434 21.21 99543 62 20967 76442 21.52 97409 63 21832 74705 22.62 96537 64 20932 75109 21.79 96041 65 20447 71362 22.27 91809 66 21524 74127 22.50 95651 67 20046 74866 21.12 94912 68 21445 75334 22.16 96779 69 19528 71322 21.49 90850 70 19245 69848 21.60 89093 71 19438 65262 22.95 84700 72 18450 64399 22.27 82849 73 18406 65412 21.96 83818 74 16864 63915 20.88 80779 75 17364 64180 21.29 81544 76 17591 61476 22.25 79067 77 17048 62128 21.53 79176 78 17063 61913 21.61 78976 79 16275 59770 21.40 76045 80 16006 58529 21.47 74535 81 16103 58711 21.52 74814 82 16149 58353 21.68 74502 83 16093 55255 22.56 71348 84 17336 59581 22.54 76917 85 15405 56050 21.56 71455 86 15344 55589 21.63 70933 87 15288 54571 21.88 69859 88 15081 53885 21.87 68966 89 15707 54078 22.51 69785 90 15463 53693 22.36 69156 91 14545 52179 21.80 66724 92 13919 51828 21.17 65747 93 14099 51815 21.39 65914 94 14601 50904 22.29 65505 95 14142 49801 22.12 63943 96 13531 49955 21.31 63486 97 14871 51966 22.25 66837 98 13199 47233 21.84 60432 99 11948 0 100.00 11948 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 51411 260729 16.47 312140 2 54236 270657 16.69 324893 3 51412 277086 15.65 328498 4 55725 287531 16.23 343256 5 6241 534986 1.15 541227 6 4511 644011 0.70 648522 7 2845 353169 0.80 356014 8 2912 373232 0.77 376144 9 2699 319735 0.84 322434 10 2557 305221 0.83 307778 11 3500 392937 0.88 396437 12 2740 319595 0.85 322335 13 2837 317881 0.88 320718 14 2672 308666 0.86 311338 15 2843 296932 0.95 299775 16 2513 277255 0.90 279768 17 2931 294674 0.98 297605 18 2843 264099 1.07 266942 19 2614 261507 0.99 264121 20 2597 259311 0.99 261908 21 2878 247932 1.15 250810 22 2769 266917 1.03 269686 23 2588 262547 0.98 265135 24 2508 242205 1.02 244713 25 2426 243602 0.99 246028 26 2663 257581 1.02 260244 27 2462 241353 1.01 243815 28 2405 229197 1.04 231602 29 2724 243241 1.11 245965 30 2398 232739 1.02 235137 31 2496 225555 1.09 228051 32 2306 230213 0.99 232519 33 2601 260766 0.99 263367 34 2313 226204 1.01 228517 35 2369 226439 1.04 228808 36 2221 225607 0.97 227828 37 2294 212103 1.07 214397 38 2532 220782 1.13 223314 39 2526 212356 1.18 214882 40 2272 207661 1.08 209933 41 2438 199640 1.21 202078 42 2326 189623 1.21 191949 43 2400 195177 1.21 197577 44 2227 195886 1.12 198113 45 2199 179737 1.21 181936 46 2174 181362 1.18 183536 47 2419 184571 1.29 186990 48 2285 177346 1.27 179631 49 2188 183239 1.18 185427 50 2424 177903 1.34 180327 51 2220 167265 1.31 169485 52 2137 164071 1.29 166208 53 2467 180400 1.35 182867 54 2211 165250 1.32 167461 55 2208 166145 1.31 168353 56 2122 163844 1.28 165966 57 2301 155682 1.46 157983 58 2038 157173 1.28 159211 59 1841 156597 1.16 158438 60 1842 150767 1.21 152609 61 1485 148465 0.99 149950 62 1550 154971 0.99 156521 63 1546 155778 0.98 157324 64 1301 141857 0.91 143158 65 1462 147453 0.98 148915 66 1380 136486 1.00 137866 67 1426 146868 0.96 148294 68 1328 143944 0.91 145272 69 1375 139662 0.97 141037 70 1344 138010 0.96 139354 71 1366 140783 0.96 142149 72 1298 129743 0.99 131041 73 1208 129991 0.92 131199 74 1293 132572 0.97 133865 75 1295 125423 1.02 126718 76 1176 123478 0.94 124654 77 1272 129052 0.98 130324 78 1301 124622 1.03 125923 79 1228 122301 0.99 123529 80 1274 119751 1.05 121025 81 1224 115044 1.05 116268 82 1167 113715 1.02 114882 83 1141 115058 0.98 116199 84 1133 110501 1.01 111634 85 1256 121915 1.02 123171 86 1133 110913 1.01 112046 87 1100 110888 0.98 111988 88 1147 105900 1.07 107047 89 1232 112070 1.09 113302 90 1193 108504 1.09 109697 91 1109 110711 0.99 111820 92 1074 107054 0.99 108128 93 1019 103146 0.98 104165 94 1020 100622 1.00 101642 95 1129 102741 1.09 103870 96 1127 98592 1.13 99719 97 1022 97239 1.04 98261 98 864 94377 0.91 95241 99 651 0 100.00 651 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 85356 378300 18.41 463656 2 70854 318967 18.18 389821 3 71669 316025 18.49 387694 4 71315 297359 19.34 368674 5 17762 579863 2.97 597625 6 16936 794492 2.09 811428 7 18735 1070225 1.72 1088960 8 17259 1059358 1.60 1076617 9 19757 1000500 1.94 1020257 10 17034 1017253 1.65 1034287 11 17142 998343 1.69 1015485 12 16761 932729 1.77 949490 13 15709 958237 1.61 973946 14 17031 963039 1.74 980070 15 16885 976225 1.70 993110 16 14874 935952 1.56 950826 17 16330 935882 1.71 952212 18 15985 932469 1.69 948454 19 14391 875387 1.62 889778 20 16438 919498 1.76 935936 21 15659 864141 1.78 879800 22 15385 840589 1.80 855974 23 15406 826530 1.83 841936 24 14494 792121 1.80 806615 25 15102 790074 1.88 805176 26 14473 783927 1.81 798400 27 15617 824957 1.86 840574 28 14242 801316 1.75 815558 29 14948 782778 1.87 797726 30 15122 760598 1.95 775720 31 14309 741842 1.89 756151 32 13997 720601 1.91 734598 33 14748 709441 2.04 724189 34 13724 704899 1.91 718623 35 14735 725290 1.99 740025 36 13834 723370 1.88 737204 37 13307 706872 1.85 720179 38 14554 731574 1.95 746128 39 14198 682309 2.04 696507 40 13424 703503 1.87 716927 41 13860 672204 2.02 686064 42 13867 678086 2.00 691953 43 13380 649757 2.02 663137 44 12673 649816 1.91 662489 45 13525 645770 2.05 659295 46 12581 649368 1.90 661949 47 12495 636641 1.92 649136 48 12664 619480 2.00 632144 49 12164 621159 1.92 633323 50 12350 613786 1.97 626136 51 12144 598444 1.99 610588 52 11205 570868 1.93 582073 53 11637 572602 1.99 584239 54 10929 556483 1.93 567412 55 10727 568209 1.85 578936 56 10820 555852 1.91 566672 57 10752 559994 1.88 570746 58 9949 545868 1.79 555817 59 10258 527580 1.91 537838 60 9985 534788 1.83 544773 61 9738 513841 1.86 523579 62 9404 508639 1.82 518043 63 9357 507393 1.81 516750 64 9187 492853 1.83 502040 65 8833 496065 1.75 504898 66 9207 482945 1.87 492152 67 8596 481003 1.76 489599 68 8879 491878 1.77 500757 69 9057 477931 1.86 486988 70 8210 467369 1.73 475579 71 8384 458386 1.80 466770 72 8787 455823 1.89 464610 73 8145 448841 1.78 456986 74 8152 447725 1.79 455877 75 8275 449039 1.81 457314 76 7612 432546 1.73 440158 77 8287 428712 1.90 436999 78 8159 428662 1.87 436821 79 7840 433970 1.77 441810 80 8114 420184 1.89 428298 81 8094 420128 1.89 428222 82 7712 413647 1.83 421359 83 7457 409690 1.79 417147 84 7884 408048 1.90 415932 85 7205 398773 1.77 405978 86 7373 397054 1.82 404427 87 7262 391184 1.82 398446 88 6941 382613 1.78 389554 89 7045 377833 1.83 384878 90 7148 378455 1.85 385603 91 6701 373775 1.76 380476 92 6630 370677 1.76 377307 93 6520 364095 1.76 370615 94 6330 359676 1.73 366006 95 6549 352488 1.82 359037 96 6246 348917 1.76 355163 97 5807 348065 1.64 353872 98 5441 330793 1.62 336234 99 3749 0 100.00 3749