Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-176_S15_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-176_S15_L003_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 36345555
Paired-end alignments with a unique best hit 19673395
Pairs without alignments under any condition 11086969
Pairs that did not map uniquely 5585191
Genomic sequence context not extractable (edges of chromosomes) 146438

Cytosine Methylation

Total C's analysed 621847999
Methylated C's in CpG context 18624777
Methylated C's in CHG context 2665077
Methylated C's in CHH context 8547123
Methylated C's in Unknown context 275198
Unmethylated C's in CpG context 78129608
Unmethylated C's in CHG context 132103527
Unmethylated C's in CHH context 381777887
Unmethylated C's in Unknown context 3126170
Percentage methylation (CpG context) 19.2%
Percentage methylation (CHG context) 2.0%
Percentage methylation (CHH context) 2.2%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 9615890 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 9911067 original bottom strand