EPI-175_S14_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 10723808 lines in total Total number of methylation call strings processed: 21447616 Final Cytosine Methylation Report ================================= Total number of C's analysed: 236933033 Total methylated C's in CpG context: 8490018 Total methylated C's in CHG context: 1229473 Total methylated C's in CHH context: 5166186 Total C to T conversions in CpG context: 24686337 Total C to T conversions in CHG context: 49573983 Total C to T conversions in CHH context: 147787036 C methylated in CpG context: 25.6% C methylated in CHG context: 2.4% C methylated in CHH context: 3.4%