CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 150314 262746 36.39 413060 2 142087 294141 32.57 436228 3 136712 268804 33.71 405516 4 142421 226163 38.64 368584 5 141423 197743 41.70 339166 6 143504 165808 46.39 309312 7 161995 160248 50.27 322243 8 77980 188791 29.23 266771 9 69600 173733 28.60 243333 10 69766 167442 29.41 237208 11 71728 171772 29.46 243500 12 70180 173137 28.84 243317 13 69240 175521 28.29 244761 14 66198 175971 27.34 242169 15 64833 177624 26.74 242457 16 60373 176355 25.50 236728 17 57815 171749 25.18 229564 18 59888 176247 25.36 236135 19 58595 176252 24.95 234847 20 59512 178681 24.98 238193 21 59521 180164 24.83 239685 22 58562 177345 24.82 235907 23 57924 176489 24.71 234413 24 57196 176877 24.44 234073 25 56342 174792 24.38 231134 26 56764 174641 24.53 231405 27 56881 178937 24.12 235818 28 57751 178950 24.40 236701 29 56585 178790 24.04 235375 30 55188 177932 23.67 233120 31 56409 176231 24.25 232640 32 55559 172777 24.33 228336 33 56213 175886 24.22 232099 34 56330 176169 24.23 232499 35 55832 175532 24.13 231364 36 55324 178150 23.70 233474 37 54220 173667 23.79 227887 38 52889 173813 23.33 226702 39 55340 175505 23.97 230845 40 54758 173655 23.97 228413 41 54141 174147 23.72 228288 42 55816 177342 23.94 233158 43 54901 175908 23.79 230809 44 54180 173929 23.75 228109 45 55024 174592 23.96 229616 46 55601 175315 24.08 230916 47 54673 172639 24.05 227312 48 53953 173374 23.73 227327 49 55946 173818 24.35 229764 50 54993 175289 23.88 230282 51 55283 175140 23.99 230423 52 54927 178029 23.58 232956 53 53709 171147 23.89 224856 54 52947 171853 23.55 224800 55 52726 169333 23.74 222059 56 53109 168302 23.99 221411 57 53839 170260 24.02 224099 58 55027 170932 24.35 225959 59 55186 169468 24.56 224654 60 53927 171732 23.90 225659 61 54594 168255 24.50 222849 62 52580 169636 23.66 222216 63 52838 168464 23.88 221302 64 51903 166908 23.72 218811 65 52892 165725 24.19 218617 66 53943 166673 24.45 220616 67 52698 163031 24.43 215729 68 52116 163238 24.20 215354 69 51189 161766 24.04 212955 70 50935 161817 23.94 212752 71 49932 158688 23.93 208620 72 49777 158002 23.96 207779 73 49305 156460 23.96 205765 74 49001 155507 23.96 204508 75 47781 155140 23.55 202921 76 47256 154148 23.46 201404 77 48115 152382 24.00 200497 78 48364 153641 23.94 202005 79 47489 150831 23.95 198320 80 46502 150606 23.59 197108 81 45805 149353 23.47 195158 82 44857 147253 23.35 192110 83 45220 148250 23.37 193470 84 45080 147748 23.38 192828 85 44744 145716 23.49 190460 86 43588 143835 23.26 187423 87 42497 142064 23.03 184561 88 42751 139426 23.47 182177 89 42183 140037 23.15 182220 90 42546 141102 23.17 183648 91 41519 137162 23.24 178681 92 40977 137250 22.99 178227 93 40592 136431 22.93 177023 94 39911 134758 22.85 174669 95 39786 132893 23.04 172679 96 39652 133657 22.88 173309 97 38392 128396 23.02 166788 98 36517 121906 23.05 158423 99 28620 96792 22.82 125412 100 36769 121466 23.24 158235 101 33621 121291 21.70 154912 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 206099 355503 36.70 561602 2 116851 342974 25.41 459825 3 50631 329376 13.32 380007 4 28746 325518 8.11 354264 5 19419 296139 6.15 315558 6 16662 280501 5.61 297163 7 13101 351517 3.59 364618 8 6611 382113 1.70 388724 9 5379 361992 1.46 367371 10 5324 346678 1.51 352002 11 5685 346079 1.62 351764 12 5535 347144 1.57 352679 13 5005 334676 1.47 339681 14 4920 336510 1.44 341430 15 4896 346297 1.39 351193 16 4535 344666 1.30 349201 17 4927 340801 1.43 345728 18 4433 339407 1.29 343840 19 4050 341151 1.17 345201 20 4369 358511 1.20 362880 21 4161 362091 1.14 366252 22 4253 356611 1.18 360864 23 4548 362449 1.24 366997 24 4399 365808 1.19 370207 25 4701 353567 1.31 358268 26 5254 357003 1.45 362257 27 4161 363881 1.13 368042 28 3964 362330 1.08 366294 29 4735 366074 1.28 370809 30 3969 366489 1.07 370458 31 3953 359730 1.09 363683 32 4296 363084 1.17 367380 33 4107 365572 1.11 369679 34 4046 360477 1.11 364523 35 4623 360754 1.27 365377 36 4156 364091 1.13 368247 37 4066 353454 1.14 357520 38 4600 360385 1.26 364985 39 3944 358201 1.09 362145 40 4024 359885 1.11 363909 41 4027 359236 1.11 363263 42 3925 359841 1.08 363766 43 3924 352928 1.10 356852 44 3894 360362 1.07 364256 45 4102 358773 1.13 362875 46 4067 355853 1.13 359920 47 4373 357291 1.21 361664 48 3970 365023 1.08 368993 49 4016 356353 1.11 360369 50 4307 356015 1.20 360322 51 4081 359929 1.12 364010 52 4096 358403 1.13 362499 53 4286 353825 1.20 358111 54 4356 362023 1.19 366379 55 4283 356350 1.19 360633 56 4295 359504 1.18 363799 57 4360 358351 1.20 362711 58 4507 354926 1.25 359433 59 4728 357259 1.31 361987 60 4595 360260 1.26 364855 61 4703 354508 1.31 359211 62 4852 353877 1.35 358729 63 4982 352586 1.39 357568 64 4999 350662 1.41 355661 65 5966 349673 1.68 355639 66 4876 344941 1.39 349817 67 5026 336618 1.47 341644 68 5390 339793 1.56 345183 69 4590 338808 1.34 343398 70 4681 332017 1.39 336698 71 4636 332554 1.37 337190 72 4858 331942 1.44 336800 73 4697 327466 1.41 332163 74 5114 326877 1.54 331991 75 4557 325889 1.38 330446 76 4966 316575 1.54 321541 77 5125 318632 1.58 323757 78 4577 314287 1.44 318864 79 4912 307103 1.57 312015 80 4632 308283 1.48 312915 81 4470 306137 1.44 310607 82 4529 300539 1.48 305068 83 4614 303977 1.50 308591 84 4799 304091 1.55 308890 85 4702 297253 1.56 301955 86 4818 296863 1.60 301681 87 5209 298639 1.71 303848 88 5750 285554 1.97 291304 89 4806 290572 1.63 295378 90 4589 288871 1.56 293460 91 4655 285016 1.61 289671 92 4779 287048 1.64 291827 93 4913 283883 1.70 288796 94 4824 277204 1.71 282028 95 4832 275872 1.72 280704 96 5107 273884 1.83 278991 97 4838 249334 1.90 254172 98 4500 229378 1.92 233878 99 2674 150314 1.75 152988 100 3344 151757 2.16 155101 101 6021 248273 2.37 254294 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 256069 459430 35.79 715499 2 141694 493513 22.31 635207 3 82810 551937 13.05 634747 4 74748 585261 11.33 660009 5 72483 687151 9.54 759634 6 59950 757240 7.34 817190 7 48336 951942 4.83 1000278 8 37401 1037548 3.48 1074949 9 28574 949786 2.92 978360 10 28448 916433 3.01 944881 11 36382 918421 3.81 954803 12 30839 926885 3.22 957724 13 33798 944296 3.46 978094 14 37643 965998 3.75 1003641 15 31837 992669 3.11 1024506 16 31552 1005686 3.04 1037238 17 36568 1014514 3.48 1051082 18 30870 1051459 2.85 1082329 19 31383 1074158 2.84 1105541 20 36781 1107071 3.22 1143852 21 31549 1108145 2.77 1139694 22 34008 1111305 2.97 1145313 23 37116 1111934 3.23 1149050 24 31421 1112713 2.75 1144134 25 34904 1116121 3.03 1151025 26 37009 1128826 3.17 1165835 27 31843 1137326 2.72 1169169 28 31694 1141945 2.70 1173639 29 37024 1139638 3.15 1176662 30 31593 1130137 2.72 1161730 31 32270 1120882 2.80 1153152 32 36167 1120143 3.13 1156310 33 31181 1128857 2.69 1160038 34 34945 1131411 3.00 1166356 35 36894 1123243 3.18 1160137 36 31873 1134220 2.73 1166093 37 31051 1126836 2.68 1157887 38 37243 1133441 3.18 1170684 39 31365 1124561 2.71 1155926 40 31871 1123004 2.76 1154875 41 37018 1128407 3.18 1165425 42 32877 1133474 2.82 1166351 43 34623 1121602 2.99 1156225 44 36090 1131704 3.09 1167794 45 33101 1121952 2.87 1155053 46 32489 1124910 2.81 1157399 47 35312 1125795 3.04 1161107 48 30376 1126225 2.63 1156601 49 31244 1116157 2.72 1147401 50 35061 1114061 3.05 1149122 51 30363 1105225 2.67 1135588 52 32668 1102210 2.88 1134878 53 35246 1097556 3.11 1132802 54 30860 1098977 2.73 1129837 55 31819 1093704 2.83 1125523 56 35334 1091927 3.13 1127261 57 30225 1103264 2.67 1133489 58 31216 1098363 2.76 1129579 59 35529 1100881 3.13 1136410 60 30038 1090177 2.68 1120215 61 32576 1079704 2.93 1112280 62 34623 1069595 3.14 1104218 63 30050 1063117 2.75 1093167 64 32298 1058707 2.96 1091005 65 33169 1050396 3.06 1083565 66 29833 1045240 2.77 1075073 67 29991 1035968 2.81 1065959 68 32981 1034027 3.09 1067008 69 29678 1027431 2.81 1057109 70 29316 1021631 2.79 1050947 71 32894 1017820 3.13 1050714 72 28854 1016235 2.76 1045089 73 31569 1001340 3.06 1032909 74 32656 999383 3.16 1032039 75 28843 990650 2.83 1019493 76 30578 981350 3.02 1011928 77 33023 975028 3.28 1008051 78 27483 969639 2.76 997122 79 29216 959834 2.95 989050 80 31840 959053 3.21 990893 81 28911 945132 2.97 974043 82 30007 935748 3.11 965755 83 32123 937092 3.31 969215 84 29588 924030 3.10 953618 85 27814 913976 2.95 941790 86 30111 903927 3.22 934038 87 27681 893084 3.01 920765 88 30185 872712 3.34 902897 89 29894 881350 3.28 911244 90 26646 881270 2.93 907916 91 27502 868581 3.07 896083 92 29096 865970 3.25 895066 93 26231 856738 2.97 882969 94 26573 849041 3.03 875614 95 29202 837592 3.37 866794 96 24975 822813 2.95 847788 97 25235 800476 3.06 825711 98 26666 743992 3.46 770658 99 15658 518998 2.93 534656 100 16668 464771 3.46 481439 101 25219 752670 3.24 777889 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 132098 164797 44.49 296895 2 115963 147023 44.09 262986 3 125792 165136 43.24 290928 4 116345 188401 38.18 304746 5 50877 244293 17.24 295170 6 31057 132202 19.02 163259 7 27192 140044 16.26 167236 8 28164 132659 17.51 160823 9 25121 116156 17.78 141277 10 27433 126933 17.77 154366 11 29209 124084 19.05 153293 12 27949 118395 19.10 146344 13 28785 115407 19.96 144192 14 30418 117941 20.50 148359 15 29724 108212 21.55 137936 16 27858 105064 20.96 132922 17 33422 112284 22.94 145706 18 32364 108002 23.06 140366 19 30865 106160 22.53 137025 20 28550 103250 21.66 131800 21 30307 101079 23.07 131386 22 29364 103856 22.04 133220 23 28073 99634 21.98 127707 24 26699 96120 21.74 122819 25 29419 99167 22.88 128586 26 27035 94475 22.25 121510 27 29249 95666 23.42 124915 28 26655 91082 22.64 117737 29 27667 95336 22.49 123003 30 26742 88275 23.25 115017 31 25509 90590 21.97 116099 32 25058 85712 22.62 110770 33 27352 86998 23.92 114350 34 26848 89678 23.04 116526 35 31368 95136 24.80 126504 36 26437 85519 23.61 111956 37 27435 87413 23.89 114848 38 24874 83929 22.86 108803 39 25544 83154 23.50 108698 40 27239 82834 24.75 110073 41 24480 81892 23.01 106372 42 24469 82845 22.80 107314 43 24310 80556 23.18 104866 44 22982 78815 22.58 101797 45 27298 84237 24.47 111535 46 22572 74269 23.31 96841 47 22964 76278 23.14 99242 48 23156 74729 23.66 97885 49 22114 78110 22.06 100224 50 20950 70883 22.81 91833 51 20850 69773 23.01 90623 52 21393 71612 23.00 93005 53 21630 69395 23.76 91025 54 21187 70030 23.23 91217 55 21149 67137 23.96 88286 56 19602 66513 22.76 86115 57 20475 66423 23.56 86898 58 19553 66139 22.82 85692 59 19098 62116 23.52 81214 60 19456 62052 23.87 81508 61 17428 61251 22.15 78679 62 17610 59115 22.95 76725 63 18587 57995 24.27 76582 64 17672 58793 23.11 76465 65 17652 55794 24.03 73446 66 18063 57863 23.79 75926 67 17244 58357 22.81 75601 68 18272 59127 23.61 77399 69 16725 54770 23.39 71495 70 16242 54693 22.90 70935 71 16700 51033 24.66 67733 72 15751 50313 23.84 66064 73 15583 51458 23.24 67041 74 14409 50243 22.29 64652 75 14825 49618 23.00 64443 76 14961 48395 23.61 63356 77 14857 48220 23.55 63077 78 14445 48549 22.93 62994 79 13887 46711 22.92 60598 80 13715 45703 23.08 59418 81 13551 45942 22.78 59493 82 13967 46111 23.25 60078 83 13718 43847 23.83 57565 84 14875 46435 24.26 61310 85 13330 44075 23.22 57405 86 13050 43179 23.21 56229 87 12850 42853 23.07 55703 88 12926 42246 23.43 55172 89 13235 42408 23.79 55643 90 13527 42281 24.24 55808 91 12698 40617 23.82 53315 92 12142 40245 23.18 52387 93 12292 40838 23.14 53130 94 12441 40125 23.67 52566 95 12229 39199 23.78 51428 96 11881 39084 23.31 50965 97 12951 40647 24.16 53598 98 11412 36821 23.66 48233 99 10070 0 100.00 10070 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 42446 208746 16.90 251192 2 44491 215958 17.08 260449 3 41247 219967 15.79 261214 4 43485 230915 15.85 274400 5 5310 427440 1.23 432750 6 3921 518283 0.75 522204 7 2468 291683 0.84 294151 8 2553 308792 0.82 311345 9 2311 259580 0.88 261891 10 2311 248433 0.92 250744 11 3166 325145 0.96 328311 12 2492 262028 0.94 264520 13 2417 260062 0.92 262479 14 2506 252066 0.98 254572 15 2501 243261 1.02 245762 16 2143 225349 0.94 227492 17 2623 241147 1.08 243770 18 2842 214262 1.31 217104 19 2231 214263 1.03 216494 20 2361 212208 1.10 214569 21 2863 201411 1.40 204274 22 2387 219411 1.08 221798 23 2371 217920 1.08 220291 24 2150 196988 1.08 199138 25 2177 199551 1.08 201728 26 2351 210916 1.10 213267 27 2295 196993 1.15 199288 28 2066 187160 1.09 189226 29 2342 200491 1.15 202833 30 2275 190380 1.18 192655 31 2105 185166 1.12 187271 32 2024 189204 1.06 191228 33 2299 214813 1.06 217112 34 2096 184319 1.12 186415 35 2196 187260 1.16 189456 36 2041 183960 1.10 186001 37 2098 174108 1.19 176206 38 2216 182972 1.20 185188 39 2272 174831 1.28 177103 40 2077 170013 1.21 172090 41 2111 165109 1.26 167220 42 2137 155082 1.36 157219 43 2210 162317 1.34 164527 44 1956 160300 1.21 162256 45 2034 147837 1.36 149871 46 1931 147932 1.29 149863 47 2148 152906 1.39 155054 48 2073 146223 1.40 148296 49 2028 150969 1.33 152997 50 2165 145969 1.46 148134 51 2020 137604 1.45 139624 52 1982 135171 1.45 137153 53 2290 149309 1.51 151599 54 2019 135758 1.47 137777 55 2016 137798 1.44 139814 56 1854 134387 1.36 136241 57 2120 129717 1.61 131837 58 1919 130463 1.45 132382 59 1620 131142 1.22 132762 60 1753 124595 1.39 126348 61 1404 124550 1.11 125954 62 1434 128944 1.10 130378 63 1395 130753 1.06 132148 64 1243 117565 1.05 118808 65 1358 124838 1.08 126196 66 1272 113375 1.11 114647 67 1376 122250 1.11 123626 68 1249 119796 1.03 121045 69 1343 115934 1.15 117277 70 1220 115160 1.05 116380 71 1269 117945 1.06 119214 72 1223 108181 1.12 109404 73 1157 108917 1.05 110074 74 1166 110766 1.04 111932 75 1112 106312 1.04 107424 76 1126 102988 1.08 104114 77 1232 109621 1.11 110853 78 1170 104987 1.10 106157 79 1115 102528 1.08 103643 80 1052 99701 1.04 100753 81 1068 96304 1.10 97372 82 1094 94471 1.14 95565 83 1115 96801 1.14 97916 84 1032 91782 1.11 92814 85 1065 102515 1.03 103580 86 1033 92960 1.10 93993 87 1021 92269 1.09 93290 88 1001 88169 1.12 89170 89 1105 93454 1.17 94559 90 1076 90485 1.18 91561 91 1057 92603 1.13 93660 92 1050 88986 1.17 90036 93 1057 86172 1.21 87229 94 942 84110 1.11 85052 95 1058 86859 1.20 87917 96 1052 82000 1.27 83052 97 982 81878 1.19 82860 98 890 79467 1.11 80357 99 705 0 100.00 705 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 73223 290322 20.14 363545 2 62342 241481 20.52 303823 3 62897 240428 20.74 303325 4 62124 230338 21.24 292462 5 18785 454323 3.97 473108 6 18680 628979 2.88 647659 7 19742 847253 2.28 866995 8 18297 838324 2.14 856621 9 21203 790789 2.61 811992 10 18590 805651 2.26 824241 11 18697 792320 2.31 811017 12 18311 740913 2.41 759224 13 17185 763824 2.20 781009 14 17863 769572 2.27 787435 15 17906 782452 2.24 800358 16 15758 748301 2.06 764059 17 17311 748815 2.26 766126 18 17006 745735 2.23 762741 19 15218 698291 2.13 713509 20 17539 734302 2.33 751841 21 16629 688826 2.36 705455 22 17091 670268 2.49 687359 23 16593 659585 2.45 676178 24 15679 632122 2.42 647801 25 16855 628601 2.61 645456 26 15781 625544 2.46 641325 27 16575 659257 2.45 675832 28 15222 636153 2.34 651375 29 16097 625085 2.51 641182 30 16526 606126 2.65 622652 31 15556 592569 2.56 608125 32 15050 577528 2.54 592578 33 16336 567317 2.80 583653 34 15145 564934 2.61 580079 35 15820 580269 2.65 596089 36 15069 577259 2.54 592328 37 14429 566776 2.48 581205 38 15738 585275 2.62 601013 39 15527 546956 2.76 562483 40 14720 564055 2.54 578775 41 15281 537190 2.77 552471 42 15375 546533 2.74 561908 43 14852 520462 2.77 535314 44 13639 518853 2.56 532492 45 14415 516367 2.72 530782 46 13959 521361 2.61 535320 47 13342 509877 2.55 523219 48 13865 495577 2.72 509442 49 13439 500487 2.61 513926 50 13447 493686 2.65 507133 51 13555 481808 2.74 495363 52 12518 457294 2.66 469812 53 12719 461217 2.68 473936 54 12128 446142 2.65 458270 55 12004 456615 2.56 468619 56 12025 447635 2.62 459660 57 11932 452945 2.57 464877 58 11237 440897 2.49 452134 59 11711 424889 2.68 436600 60 11281 431554 2.55 442835 61 11456 413386 2.70 424842 62 10743 409166 2.56 419909 63 10472 411140 2.48 421612 64 10757 398242 2.63 408999 65 10258 401292 2.49 411550 66 10232 389877 2.56 400109 67 9763 389130 2.45 398893 68 10028 399415 2.45 409443 69 10350 388633 2.59 398983 70 9900 378749 2.55 388649 71 9458 370713 2.49 380171 72 10213 369366 2.69 379579 73 9538 363756 2.56 373294 74 9330 364114 2.50 373444 75 9484 362970 2.55 372454 76 8897 350099 2.48 358996 77 9676 347921 2.71 357597 78 9637 350396 2.68 360033 79 9156 353857 2.52 363013 80 9254 341699 2.64 350953 81 9428 342391 2.68 351819 82 9145 336360 2.65 345505 83 8604 334192 2.51 342796 84 9132 334293 2.66 343425 85 8557 324972 2.57 333529 86 8346 324463 2.51 332809 87 8570 319527 2.61 328097 88 8154 311160 2.55 319314 89 8167 309118 2.57 317285 90 8401 309022 2.65 317423 91 7849 305162 2.51 313011 92 7574 302212 2.44 309786 93 7652 298354 2.50 306006 94 7215 293293 2.40 300508 95 7579 288419 2.56 295998 96 7508 286466 2.55 293974 97 6797 285388 2.33 292185 98 6322 271248 2.28 277570 99 4613 0 100.00 4613