Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-175_S14_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-175_S14_L003_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 24654280
Paired-end alignments with a unique best hit 14491765
Pairs without alignments under any condition 6060084
Pairs that did not map uniquely 4102431
Genomic sequence context not extractable (edges of chromosomes) 68350

Cytosine Methylation

Total C's analysed 451575919
Methylated C's in CpG context 14340294
Methylated C's in CHG context 2142922
Methylated C's in CHH context 8297568
Methylated C's in Unknown context 250659
Unmethylated C's in CpG context 51171881
Unmethylated C's in CHG context 97528384
Unmethylated C's in CHH context 278094870
Unmethylated C's in Unknown context 2284707
Percentage methylation (CpG context) 21.9%
Percentage methylation (CHG context) 2.1%
Percentage methylation (CHH context) 2.9%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 7159820 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 7263595 original bottom strand