CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 136675 246304 35.69 382979 2 123497 268633 31.49 392130 3 117603 244817 32.45 362420 4 123291 212260 36.74 335551 5 120780 188902 39.00 309682 6 120841 161555 42.79 282396 7 135186 156890 46.28 292076 8 67350 181545 27.06 248895 9 60571 170391 26.23 230962 10 61287 165675 27.00 226962 11 64084 167515 27.67 231599 12 62974 167792 27.29 230766 13 61858 169408 26.75 231266 14 59054 171117 25.66 230171 15 57422 170298 25.22 227720 16 53400 170220 23.88 223620 17 51191 165050 23.67 216241 18 53290 168676 24.01 221966 19 52098 169721 23.49 221819 20 52316 172178 23.30 224494 21 53046 173110 23.46 226156 22 51941 171455 23.25 223396 23 51169 169705 23.17 220874 24 50922 169817 23.07 220739 25 50565 167761 23.16 218326 26 50443 167059 23.19 217502 27 49876 170660 22.62 220536 28 51243 170615 23.10 221858 29 49579 170284 22.55 219863 30 48655 170657 22.19 219312 31 49972 168856 22.84 218828 32 49079 165989 22.82 215068 33 49560 168423 22.74 217983 34 50065 167906 22.97 217971 35 49536 166389 22.94 215925 36 48709 169490 22.32 218199 37 48054 165359 22.52 213413 38 47382 165121 22.30 212503 39 48526 166999 22.52 215525 40 47990 164783 22.55 212773 41 48250 165370 22.59 213620 42 49205 167665 22.69 216870 43 48451 166610 22.53 215061 44 48097 164938 22.58 213035 45 48481 165269 22.68 213750 46 48726 166028 22.69 214754 47 47997 163261 22.72 211258 48 47972 163575 22.68 211547 49 49198 164420 23.03 213618 50 47722 164213 22.52 211935 51 48470 163908 22.82 212378 52 48574 166928 22.54 215502 53 46667 160482 22.53 207149 54 46849 160907 22.55 207756 55 46513 159310 22.60 205823 56 46210 158393 22.59 204603 57 47341 160450 22.78 207791 58 48143 159591 23.18 207734 59 48983 158713 23.58 207696 60 47842 158753 23.16 206595 61 48171 156576 23.53 204747 62 46917 157207 22.98 204124 63 46566 155677 23.02 202243 64 46291 153528 23.17 199819 65 46192 152844 23.21 199036 66 46913 152515 23.52 199428 67 45617 148380 23.51 193997 68 44813 147723 23.28 192536 69 44226 146035 23.24 190261 70 43847 145717 23.13 189564 71 43182 142884 23.21 186066 72 42395 142495 22.93 184890 73 42478 140068 23.27 182546 74 41676 139126 23.05 180802 75 40979 138099 22.88 179078 76 40470 137651 22.72 178121 77 40565 134687 23.15 175252 78 40359 135214 22.99 175573 79 39547 132702 22.96 172249 80 38598 132486 22.56 171084 81 38262 129964 22.74 168226 82 37063 129316 22.28 166379 83 38004 129525 22.69 167529 84 37097 128551 22.40 165648 85 36812 125499 22.68 162311 86 35809 124354 22.36 160163 87 34836 123486 22.00 158322 88 35039 122937 22.18 157976 89 34335 120079 22.24 154414 90 34153 120258 22.12 154411 91 33719 118021 22.22 151740 92 33064 117386 21.98 150450 93 33013 116141 22.13 149154 94 32448 115442 21.94 147890 95 32084 113499 22.04 145583 96 32128 113346 22.09 145474 97 30998 109381 22.08 140379 98 29022 102917 22.00 131939 99 23166 81544 22.12 104710 100 29652 103341 22.30 132993 101 27701 102562 21.27 130263 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 180270 342663 34.47 522933 2 102484 324726 23.99 427210 3 46212 308770 13.02 354982 4 26476 316082 7.73 342558 5 16984 290042 5.53 307026 6 14643 277037 5.02 291680 7 11526 339000 3.29 350526 8 5633 364535 1.52 370168 9 4854 344671 1.39 349525 10 4828 331111 1.44 335939 11 4947 331619 1.47 336566 12 4910 334293 1.45 339203 13 4544 322667 1.39 327211 14 4262 322926 1.30 327188 15 4188 330574 1.25 334762 16 3864 329659 1.16 333523 17 4382 324339 1.33 328721 18 3976 323708 1.21 327684 19 3519 323964 1.07 327483 20 3733 339458 1.09 343191 21 3758 343143 1.08 346901 22 3960 337556 1.16 341516 23 4033 341627 1.17 345660 24 3853 347145 1.10 350998 25 3731 336837 1.10 340568 26 4504 338150 1.31 342654 27 3664 345481 1.05 349145 28 3675 342347 1.06 346022 29 4161 345696 1.19 349857 30 3582 347255 1.02 350837 31 3704 339364 1.08 343068 32 3699 344131 1.06 347830 33 3753 344674 1.08 348427 34 3673 339644 1.07 343317 35 4151 340772 1.20 344923 36 3716 343782 1.07 347498 37 3979 332808 1.18 336787 38 4057 337510 1.19 341567 39 3811 337924 1.12 341735 40 3771 337008 1.11 340779 41 3783 336415 1.11 340198 42 3711 339912 1.08 343623 43 3675 331930 1.10 335605 44 3653 336364 1.07 340017 45 3740 335847 1.10 339587 46 3763 333479 1.12 337242 47 3737 332904 1.11 336641 48 3780 340371 1.10 344151 49 3807 329949 1.14 333756 50 3989 332199 1.19 336188 51 3864 336336 1.14 340200 52 4001 333078 1.19 337079 53 4091 330531 1.22 334622 54 4164 336029 1.22 340193 55 4073 330334 1.22 334407 56 4307 332487 1.28 336794 57 4363 332063 1.30 336426 58 4500 328203 1.35 332703 59 4613 330624 1.38 335237 60 4451 329857 1.33 334308 61 4671 325073 1.42 329744 62 4743 323513 1.44 328256 63 4700 320620 1.44 325320 64 4839 317121 1.50 321960 65 5374 315973 1.67 321347 66 4717 311343 1.49 316060 67 4741 302930 1.54 307671 68 4890 303954 1.58 308844 69 4586 302050 1.50 306636 70 4532 295554 1.51 300086 71 4492 294411 1.50 298903 72 4366 293378 1.47 297744 73 4376 288925 1.49 293301 74 4682 286375 1.61 291057 75 4319 286163 1.49 290482 76 4363 276923 1.55 281286 77 4653 277222 1.65 281875 78 4227 273539 1.52 277766 79 4214 265448 1.56 269662 80 4237 266294 1.57 270531 81 4261 263166 1.59 267427 82 4109 258494 1.56 262603 83 4104 260609 1.55 264713 84 4298 260290 1.62 264588 85 4364 253208 1.69 257572 86 4198 253875 1.63 258073 87 4147 254583 1.60 258730 88 4294 247200 1.71 251494 89 3980 245648 1.59 249628 90 4041 245118 1.62 249159 91 3963 240024 1.62 243987 92 4085 240459 1.67 244544 93 4201 238990 1.73 243191 94 3992 232705 1.69 236697 95 4149 230383 1.77 234532 96 4138 228965 1.78 233103 97 4087 209511 1.91 213598 98 3786 192311 1.93 196097 99 2321 124880 1.82 127201 100 2754 126965 2.12 129719 101 5437 207832 2.55 213269 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 237514 456231 34.24 693745 2 126950 479607 20.93 606557 3 70725 524188 11.89 594913 4 60958 570033 9.66 630991 5 56733 664081 7.87 720814 6 47783 721949 6.21 769732 7 37976 894934 4.07 932910 8 28295 962935 2.85 991230 9 21981 893420 2.40 915401 10 21941 869187 2.46 891128 11 27856 872664 3.09 900520 12 23712 881963 2.62 905675 13 26052 898506 2.82 924558 14 28450 922269 2.99 950719 15 24832 945245 2.56 970077 16 23976 958188 2.44 982164 17 27965 965321 2.82 993286 18 23981 999035 2.34 1023016 19 24389 1019099 2.34 1043488 20 27642 1051596 2.56 1079238 21 24570 1052243 2.28 1076813 22 26674 1057319 2.46 1083993 23 28255 1058394 2.60 1086649 24 24776 1061829 2.28 1086605 25 26071 1068142 2.38 1094213 26 28562 1076767 2.58 1105329 27 24966 1082051 2.26 1107017 28 24428 1084846 2.20 1109274 29 27924 1086376 2.51 1114300 30 24370 1077818 2.21 1102188 31 24683 1065620 2.26 1090303 32 26626 1066778 2.44 1093404 33 24277 1067449 2.22 1091726 34 26701 1076031 2.42 1102732 35 27979 1067407 2.55 1095386 36 24281 1074729 2.21 1099010 37 24667 1063848 2.27 1088515 38 27964 1072673 2.54 1100637 39 24161 1064956 2.22 1089117 40 24770 1059340 2.28 1084110 41 27703 1065085 2.54 1092788 42 24881 1068184 2.28 1093065 43 25841 1056961 2.39 1082802 44 26947 1062667 2.47 1089614 45 25035 1054053 2.32 1079088 46 24403 1055687 2.26 1080090 47 26567 1054877 2.46 1081444 48 23316 1055071 2.16 1078387 49 23404 1046309 2.19 1069713 50 26189 1041267 2.45 1067456 51 22991 1032765 2.18 1055756 52 24336 1029348 2.31 1053684 53 25440 1022184 2.43 1047624 54 22889 1023021 2.19 1045910 55 23809 1016000 2.29 1039809 56 25665 1013354 2.47 1039019 57 22408 1018943 2.15 1041351 58 23385 1012386 2.26 1035771 59 25863 1007557 2.50 1033420 60 22207 997680 2.18 1019887 61 24252 985431 2.40 1009683 62 24773 972876 2.48 997649 63 22324 964059 2.26 986383 64 23531 955623 2.40 979154 65 24188 949319 2.48 973507 66 21679 938694 2.26 960373 67 21676 930923 2.28 952599 68 23461 924075 2.48 947536 69 21230 916666 2.26 937896 70 21378 906174 2.30 927552 71 23338 900575 2.53 923913 72 20683 896642 2.25 917325 73 22630 880883 2.50 903513 74 23086 878368 2.56 901454 75 20895 866353 2.36 887248 76 20680 862103 2.34 882783 77 23188 851522 2.65 874710 78 19552 844004 2.26 863556 79 20423 835121 2.39 855544 80 22231 828784 2.61 851015 81 20276 815204 2.43 835480 82 20869 807434 2.52 828303 83 22128 803603 2.68 825731 84 20118 794387 2.47 814505 85 20197 780263 2.52 800460 86 21030 770781 2.66 791811 87 18553 763777 2.37 782330 88 19122 756812 2.46 775934 89 20942 747965 2.72 768907 90 18418 744267 2.41 762685 91 18907 734053 2.51 752960 92 19893 730969 2.65 750862 93 18265 720532 2.47 738797 94 18252 714035 2.49 732287 95 20139 704238 2.78 724377 96 17617 689668 2.49 707285 97 17547 670714 2.55 688261 98 18441 623370 2.87 641811 99 11200 436585 2.50 447785 100 11551 388998 2.88 400549 101 17689 633448 2.72 651137 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 106138 143761 42.47 249899 2 94446 130798 41.93 225244 3 101487 145622 41.07 247109 4 94315 166387 36.18 260702 5 40519 218217 15.66 258736 6 24617 117271 17.35 141888 7 21813 124919 14.87 146732 8 22801 116935 16.32 139736 9 20070 102043 16.44 122113 10 22353 112231 16.61 134584 11 23182 109526 17.47 132708 12 22486 105277 17.60 127763 13 23517 102675 18.64 126192 14 24232 104840 18.77 129072 15 23427 95760 19.66 119187 16 22219 91929 19.47 114148 17 27159 99695 21.41 126854 18 26127 95289 21.52 121416 19 24849 94512 20.82 119361 20 23104 91662 20.13 114766 21 24332 89042 21.46 113374 22 23508 91679 20.41 115187 23 22519 87513 20.47 110032 24 21769 84435 20.50 106204 25 23719 87690 21.29 111409 26 21925 83574 20.78 105499 27 23463 84437 21.75 107900 28 21645 79823 21.33 101468 29 22218 84175 20.88 106393 30 21166 78462 21.25 99628 31 20600 80025 20.47 100625 32 20149 76469 20.85 96618 33 22368 76513 22.62 98881 34 21166 78742 21.19 99908 35 25173 82479 23.38 107652 36 21365 74960 22.18 96325 37 21574 76190 22.07 97764 38 19891 74699 21.03 94590 39 20251 72238 21.90 92489 40 21761 72368 23.12 94129 41 19513 70892 21.58 90405 42 19608 71928 21.42 91536 43 19839 69987 22.09 89826 44 18169 67774 21.14 85943 45 21615 72418 22.99 94033 46 18033 64042 21.97 82075 47 18377 65650 21.87 84027 48 18023 64887 21.74 82910 49 17421 66849 20.67 84270 50 16547 60777 21.40 77324 51 16627 59920 21.72 76547 52 16988 60954 21.80 77942 53 16920 58747 22.36 75667 54 16523 58190 22.12 74713 55 16443 56233 22.63 72676 56 15373 54822 21.90 70195 57 15488 55344 21.87 70832 58 15250 55219 21.64 70469 59 14635 51104 22.26 65739 60 14848 51157 22.50 66005 61 13247 50521 20.77 63768 62 13337 48619 21.53 61956 63 14320 47565 23.14 61885 64 13556 48186 21.96 61742 65 13043 45060 22.45 58103 66 13995 47129 22.90 61124 67 12705 47787 21.00 60492 68 13655 48206 22.07 61861 69 12963 45765 22.07 58728 70 12532 44445 21.99 56977 71 12772 41765 23.42 54537 72 11936 40664 22.69 52600 73 11972 41899 22.22 53871 74 10948 40952 21.09 51900 75 11416 40943 21.80 52359 76 11384 39284 22.47 50668 77 10982 39815 21.62 50797 78 11331 39848 22.14 51179 79 10809 38454 21.94 49263 80 10597 37192 22.17 47789 81 10217 37294 21.50 47511 82 10421 37075 21.94 47496 83 10439 35311 22.82 45750 84 11269 37850 22.94 49119 85 9827 36077 21.41 45904 86 9809 35476 21.66 45285 87 9787 34712 21.99 44499 88 9808 34391 22.19 44199 89 10078 34665 22.52 44743 90 10119 34649 22.60 44768 91 9397 33320 22.00 42717 92 9063 32952 21.57 42015 93 9309 32896 22.06 42205 94 9404 32261 22.57 41665 95 9355 31795 22.73 41150 96 9023 31674 22.17 40697 97 9692 33071 22.66 42763 98 8621 30036 22.30 38657 99 7841 0 100.00 7841 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 37216 182182 16.96 219398 2 39423 191505 17.07 230928 3 37016 196125 15.88 233141 4 38856 204247 15.98 243103 5 4606 373833 1.22 378439 6 3286 456705 0.71 459991 7 2096 254385 0.82 256481 8 2055 272065 0.75 274120 9 1941 226718 0.85 228659 10 2011 216772 0.92 218783 11 2738 281465 0.96 284203 12 2071 226834 0.90 228905 13 2072 225830 0.91 227902 14 2020 222002 0.90 224022 15 1994 212604 0.93 214598 16 1951 197892 0.98 199843 17 2010 210696 0.94 212706 18 2180 186259 1.16 188439 19 2012 186526 1.07 188538 20 2172 184717 1.16 186889 21 2378 175606 1.34 177984 22 2195 192517 1.13 194712 23 2027 188364 1.06 190391 24 1949 170690 1.13 172639 25 1869 173048 1.07 174917 26 2040 182989 1.10 185029 27 2026 169214 1.18 171240 28 1864 161644 1.14 163508 29 2080 174497 1.18 176577 30 1976 163297 1.20 165273 31 1963 159095 1.22 161058 32 1927 162429 1.17 164356 33 2211 183406 1.19 185617 34 1985 158011 1.24 159996 35 2099 160939 1.29 163038 36 2049 157727 1.28 159776 37 1943 148689 1.29 150632 38 2125 156077 1.34 158202 39 2135 149067 1.41 151202 40 2042 144647 1.39 146689 41 2192 140227 1.54 142419 42 2065 131560 1.55 133625 43 2327 137382 1.67 139709 44 1999 136073 1.45 138072 45 1900 124035 1.51 125935 46 1999 124481 1.58 126480 47 2072 127484 1.60 129556 48 1904 121497 1.54 123401 49 2018 126015 1.58 128033 50 2016 122162 1.62 124178 51 1947 114068 1.68 116015 52 1971 112256 1.73 114227 53 2298 123595 1.83 125893 54 1895 112083 1.66 113978 55 1860 113921 1.61 115781 56 1712 110890 1.52 112602 57 1892 105343 1.76 107235 58 1632 107166 1.50 108798 59 1368 105396 1.28 106764 60 1246 100752 1.22 101998 61 1108 99309 1.10 100417 62 1066 103316 1.02 104382 63 1078 104391 1.02 105469 64 977 94295 1.03 95272 65 1060 100018 1.05 101078 66 991 91261 1.07 92252 67 1055 98235 1.06 99290 68 950 96296 0.98 97246 69 955 92949 1.02 93904 70 948 92089 1.02 93037 71 940 93906 0.99 94846 72 908 87058 1.03 87966 73 837 87215 0.95 88052 74 837 89012 0.93 89849 75 834 84562 0.98 85396 76 810 82554 0.97 83364 77 834 86496 0.95 87330 78 843 84120 0.99 84963 79 895 82163 1.08 83058 80 815 80229 1.01 81044 81 816 77208 1.05 78024 82 812 75834 1.06 76646 83 858 77921 1.09 78779 84 763 73548 1.03 74311 85 851 81231 1.04 82082 86 770 74454 1.02 75224 87 776 73708 1.04 74484 88 731 70074 1.03 70805 89 882 75398 1.16 76280 90 793 72354 1.08 73147 91 736 73854 0.99 74590 92 726 71475 1.01 72201 93 738 68643 1.06 69381 94 726 66946 1.07 67672 95 794 68623 1.14 69417 96 832 65755 1.25 66587 97 729 64639 1.12 65368 98 598 62871 0.94 63469 99 475 0 100.00 475 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 62883 264980 19.18 327863 2 52375 221549 19.12 273924 3 52858 217883 19.52 270741 4 52820 207470 20.29 260290 5 15202 403339 3.63 418541 6 13900 556372 2.44 570272 7 15281 747284 2.00 762565 8 13986 740461 1.85 754447 9 15543 695786 2.19 711329 10 14938 711170 2.06 726108 11 14572 696894 2.05 711466 12 13367 649359 2.02 662726 13 13585 671856 1.98 685441 14 14337 676087 2.08 690424 15 13799 685521 1.97 699320 16 12870 651678 1.94 664548 17 13750 654703 2.06 668453 18 13098 649415 1.98 662513 19 12298 610977 1.97 623275 20 13841 639414 2.12 653255 21 12921 598714 2.11 611635 22 13333 583093 2.24 596426 23 13167 571653 2.25 584820 24 11805 547343 2.11 559148 25 13217 545578 2.37 558795 26 12294 538369 2.23 550663 27 12605 567145 2.17 579750 28 12305 549156 2.19 561461 29 12416 540717 2.24 553133 30 12518 521881 2.34 534399 31 12166 506567 2.35 518733 32 11585 493151 2.30 504736 33 12498 484382 2.52 496880 34 11966 480779 2.43 492745 35 12562 492827 2.49 505389 36 11633 491533 2.31 503166 37 11496 481558 2.33 493054 38 12100 494382 2.39 506482 39 11694 460179 2.48 471873 40 11580 474062 2.38 485642 41 11634 452305 2.51 463939 42 11265 456819 2.41 468084 43 11235 435780 2.51 447015 44 10607 436300 2.37 446907 45 10814 430192 2.45 441006 46 10848 433014 2.44 443862 47 10228 423392 2.36 433620 48 10173 410981 2.42 421154 49 10065 412227 2.38 422292 50 9880 406567 2.37 416447 51 10007 395098 2.47 405105 52 9271 375818 2.41 385089 53 9392 376951 2.43 386343 54 8804 365543 2.35 374347 55 8728 371383 2.30 380111 56 8655 364296 2.32 372951 57 8390 366608 2.24 374998 58 8028 357515 2.20 365543 59 7883 344364 2.24 352247 60 7302 350772 2.04 358074 61 7738 334255 2.26 341993 62 7111 331429 2.10 338540 63 6848 331792 2.02 338640 64 7254 322293 2.20 329547 65 6951 322820 2.11 329771 66 6587 314583 2.05 321170 67 6708 312708 2.10 319416 68 6649 322028 2.02 328677 69 6920 312165 2.17 319085 70 6613 305047 2.12 311660 71 6333 298662 2.08 304995 72 6634 296371 2.19 303005 73 6543 292135 2.19 298678 74 6187 291651 2.08 297838 75 6236 290835 2.10 297071 76 5959 280448 2.08 286407 77 6340 279182 2.22 285522 78 6065 280615 2.12 286680 79 6030 283314 2.08 289344 80 6036 274214 2.15 280250 81 6127 274122 2.19 280249 82 6014 270550 2.17 276564 83 5610 268103 2.05 273713 84 5903 265870 2.17 271773 85 5613 260760 2.11 266373 86 5514 260052 2.08 265566 87 5358 255878 2.05 261236 88 5399 250268 2.11 255667 89 5332 247930 2.11 253262 90 5195 248364 2.05 253559 91 5107 244525 2.05 249632 92 5033 243232 2.03 248265 93 4925 238994 2.02 243919 94 4808 234335 2.01 239143 95 4820 231100 2.04 235920 96 4736 228211 2.03 232947 97 4503 226805 1.95 231308 98 4023 216336 1.83 220359 99 2877 0 100.00 2877