Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-170_S13_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-170_S13_L002_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 27996279
Paired-end alignments with a unique best hit 14008357
Pairs without alignments under any condition 9517105
Pairs that did not map uniquely 4470817
Genomic sequence context not extractable (edges of chromosomes) 90403

Cytosine Methylation

Total C's analysed 429764510
Methylated C's in CpG context 12473628
Methylated C's in CHG context 2046361
Methylated C's in CHH context 6511772
Methylated C's in Unknown context 205169
Unmethylated C's in CpG context 53337644
Unmethylated C's in CHG context 93355104
Unmethylated C's in CHH context 262040001
Unmethylated C's in Unknown context 2171425
Percentage methylation (CpG context) 19.0%
Percentage methylation (CHG context) 2.1%
Percentage methylation (CHH context) 2.4%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 6853907 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 7064047 original bottom strand