EPI-169_S12_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 8523998 lines in total Total number of methylation call strings processed: 17047996 Final Cytosine Methylation Report ================================= Total number of C's analysed: 181234560 Total methylated C's in CpG context: 6570532 Total methylated C's in CHG context: 1073337 Total methylated C's in CHH context: 5780399 Total C to T conversions in CpG context: 18666360 Total C to T conversions in CHG context: 38271453 Total C to T conversions in CHH context: 110872479 C methylated in CpG context: 26.0% C methylated in CHG context: 2.7% C methylated in CHH context: 5.0%