CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 119130 186588 38.97 305718 2 111869 203678 35.45 315547 3 110559 189973 36.79 300532 4 117709 167609 41.26 285318 5 114380 147976 43.60 262356 6 111985 125619 47.13 237604 7 123501 124597 49.78 248098 8 61418 142668 30.09 204086 9 55043 134713 29.01 189756 10 55164 131892 29.49 187056 11 57940 136186 29.85 194126 12 55919 136083 29.12 192002 13 55125 137365 28.64 192490 14 52949 138957 27.59 191906 15 51680 139253 27.07 190933 16 48407 138676 25.87 187083 17 46526 135773 25.52 182299 18 48314 139228 25.76 187542 19 46784 138441 25.26 185225 20 47583 140325 25.32 187908 21 47460 141120 25.17 188580 22 46577 140674 24.87 187251 23 46176 139767 24.83 185943 24 45938 139306 24.80 185244 25 45654 139536 24.65 185190 26 45661 137735 24.90 183396 27 45029 140297 24.30 185326 28 46465 141189 24.76 187654 29 45226 140106 24.40 185332 30 44394 140945 23.95 185339 31 45245 139568 24.48 184813 32 44310 137149 24.42 181459 33 45062 139251 24.45 184313 34 45595 139115 24.68 184710 35 44600 138155 24.40 182755 36 44627 140144 24.15 184771 37 43018 137198 23.87 180216 38 43029 137354 23.85 180383 39 44398 138580 24.26 182978 40 43706 137312 24.14 181018 41 43874 136267 24.36 180141 42 44417 138748 24.25 183165 43 43992 137517 24.24 181509 44 43241 136471 24.06 179712 45 44279 137178 24.40 181457 46 44226 138114 24.25 182340 47 43351 135650 24.22 179001 48 42673 136341 23.84 179014 49 45034 135576 24.93 180610 50 43049 136333 24.00 179382 51 43463 135707 24.26 179170 52 44010 138335 24.14 182345 53 42693 133351 24.25 176044 54 42549 134013 24.10 176562 55 42122 131489 24.26 173611 56 42408 131685 24.36 174093 57 42949 132646 24.46 175595 58 43378 132476 24.67 175854 59 44165 131727 25.11 175892 60 43733 132627 24.80 176360 61 43569 130106 25.09 173675 62 42647 131336 24.51 173983 63 42764 130594 24.67 173358 64 41615 128469 24.47 170084 65 41751 127138 24.72 168889 66 42491 127539 24.99 170030 67 41965 124455 25.22 166420 68 40772 124179 24.72 164951 69 40240 122487 24.73 162727 70 39749 121806 24.60 161555 71 39314 118852 24.86 158166 72 38870 119187 24.59 158057 73 38167 118046 24.43 156213 74 38192 117877 24.47 156069 75 36958 116871 24.03 153829 76 37098 115882 24.25 152980 77 37185 113668 24.65 150853 78 37084 114257 24.50 151341 79 35930 112764 24.16 148694 80 35681 111574 24.23 147255 81 35116 110419 24.13 145535 82 34359 109251 23.93 143610 83 34871 109337 24.18 144208 84 34286 109281 23.88 143567 85 34100 107276 24.12 141376 86 33078 105814 23.82 138892 87 32197 105118 23.45 137315 88 32352 103975 23.73 136327 89 31835 102330 23.73 134165 90 31561 102596 23.53 134157 91 31189 100317 23.72 131506 92 30692 99882 23.51 130574 93 30333 99518 23.36 129851 94 30186 97932 23.56 128118 95 29826 96994 23.52 126820 96 29590 96713 23.43 126303 97 28500 94176 23.23 122676 98 26883 88325 23.33 115208 99 21291 69799 23.37 91090 100 27598 87368 24.01 114966 101 25491 87651 22.53 113142 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 152655 275141 35.68 427796 2 90759 261729 25.75 352488 3 44412 257756 14.70 302168 4 27986 261716 9.66 289702 5 18282 238058 7.13 256340 6 15711 226217 6.49 241928 7 11172 277869 3.87 289041 8 6150 300128 2.01 306278 9 4878 286535 1.67 291413 10 4940 278536 1.74 283476 11 5369 279408 1.89 284777 12 5083 280948 1.78 286031 13 4855 273348 1.75 278203 14 4835 275579 1.72 280414 15 4697 282408 1.64 287105 16 4225 283039 1.47 287264 17 4979 277534 1.76 282513 18 4096 277156 1.46 281252 19 3866 276305 1.38 280171 20 4316 291081 1.46 295397 21 4201 293294 1.41 297495 22 4270 288933 1.46 293203 23 4375 294582 1.46 298957 24 4195 297311 1.39 301506 25 4085 288500 1.40 292585 26 5796 290229 1.96 296025 27 4166 297140 1.38 301306 28 3914 295372 1.31 299286 29 5076 297771 1.68 302847 30 3816 297758 1.27 301574 31 3897 290677 1.32 294574 32 3988 296131 1.33 300119 33 4089 296000 1.36 300089 34 4117 290952 1.40 295069 35 5001 292082 1.68 297083 36 4204 295924 1.40 300128 37 4245 284970 1.47 289215 38 4939 290509 1.67 295448 39 4040 290456 1.37 294496 40 4055 289499 1.38 293554 41 4012 288545 1.37 292557 42 3738 291482 1.27 295220 43 3890 285230 1.35 289120 44 3843 289151 1.31 292994 45 3929 288215 1.34 292144 46 3862 285491 1.33 289353 47 4376 286798 1.50 291174 48 3867 293840 1.30 297707 49 4111 284175 1.43 288286 50 4407 284211 1.53 288618 51 4066 287838 1.39 291904 52 4023 287020 1.38 291043 53 4227 283757 1.47 287984 54 4513 287020 1.55 291533 55 4311 283928 1.50 288239 56 4456 285619 1.54 290075 57 4467 285552 1.54 290019 58 4522 282928 1.57 287450 59 4818 282979 1.67 287797 60 4674 284638 1.62 289312 61 4635 278854 1.63 283489 62 4780 277495 1.69 282275 63 4810 276463 1.71 281273 64 4978 272186 1.80 277164 65 6145 271931 2.21 278076 66 4856 268322 1.78 273178 67 4910 261634 1.84 266544 68 5491 262558 2.05 268049 69 4382 260588 1.65 264970 70 4355 255252 1.68 259607 71 4518 254087 1.75 258605 72 4419 254742 1.71 259161 73 4448 250424 1.75 254872 74 4921 248274 1.94 253195 75 4256 248651 1.68 252907 76 4201 240050 1.72 244251 77 5002 240500 2.04 245502 78 4211 238584 1.73 242795 79 4239 232680 1.79 236919 80 4272 232398 1.81 236670 81 4106 229281 1.76 233387 82 4117 224523 1.80 228640 83 4327 228255 1.86 232582 84 4290 227312 1.85 231602 85 4288 222270 1.89 226558 86 4363 221757 1.93 226120 87 3960 222621 1.75 226581 88 4194 216745 1.90 220939 89 4398 215274 2.00 219672 90 3974 214824 1.82 218798 91 4042 209975 1.89 214017 92 4210 210429 1.96 214639 93 4333 209108 2.03 213441 94 4155 203797 2.00 207952 95 4241 203315 2.04 207556 96 4201 201943 2.04 206144 97 4191 183492 2.23 187683 98 3954 169276 2.28 173230 99 2221 109689 1.98 111910 100 2890 111150 2.53 114040 101 5577 181640 2.98 187217 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 226980 392528 36.64 619508 2 145158 420433 25.66 565591 3 91034 458980 16.55 550014 4 83795 487115 14.68 570910 5 80617 555355 12.68 635972 6 67195 600601 10.06 667796 7 49213 744591 6.20 793804 8 44183 800999 5.23 845182 9 33179 745016 4.26 778195 10 33375 726007 4.40 759382 11 44211 731564 5.70 775775 12 36999 742734 4.75 779733 13 41162 755571 5.17 796733 14 46554 775767 5.66 822321 15 37908 793759 4.56 831667 16 38216 802295 4.55 840511 17 45939 808739 5.38 854678 18 36814 837546 4.21 874360 19 37076 850401 4.18 887477 20 45347 879055 4.91 924402 21 37528 879700 4.09 917228 22 41465 878260 4.51 919725 23 45743 880107 4.94 925850 24 38560 878555 4.20 917115 25 41890 885752 4.52 927642 26 46212 893326 4.92 939538 27 38499 896384 4.12 934883 28 37671 902316 4.01 939987 29 45230 902955 4.77 948185 30 38203 893827 4.10 932030 31 39248 885009 4.25 924257 32 42792 884215 4.62 927007 33 38157 886852 4.13 925009 34 43375 890847 4.64 934222 35 45662 884488 4.91 930150 36 38846 892570 4.17 931416 37 37492 882503 4.08 919995 38 45548 890636 4.87 936184 39 36963 884200 4.01 921163 40 38090 878910 4.15 917000 41 44702 884462 4.81 929164 42 39150 887032 4.23 926182 43 41861 878990 4.55 920851 44 44058 885418 4.74 929476 45 39711 876457 4.33 916168 46 38566 878051 4.21 916617 47 42611 876488 4.64 919099 48 35691 876438 3.91 912129 49 36627 867373 4.05 904000 50 41746 865201 4.60 906947 51 35277 858910 3.95 894187 52 38697 854310 4.33 893007 53 42447 850188 4.76 892635 54 36053 849226 4.07 885279 55 36927 842380 4.20 879307 56 42148 841892 4.77 884040 57 34910 845074 3.97 879984 58 35479 840361 4.05 875840 59 41861 839456 4.75 881317 60 34250 831173 3.96 865423 61 37533 821059 4.37 858592 62 39941 811036 4.69 850977 63 34268 803761 4.09 838029 64 36917 797899 4.42 834816 65 38478 791423 4.64 829901 66 33099 784593 4.05 817692 67 33181 774826 4.11 808007 68 37597 770618 4.65 808215 69 31831 765103 3.99 796934 70 33019 760215 4.16 793234 71 36960 757610 4.65 794570 72 32279 753186 4.11 785465 73 35421 739047 4.57 774468 74 36948 737748 4.77 774696 75 31905 727777 4.20 759682 76 31454 723614 4.17 755068 77 36926 716861 4.90 753787 78 29203 710670 3.95 739873 79 30673 703582 4.18 734255 80 34903 699249 4.75 734152 81 31063 687228 4.32 718291 82 32677 680806 4.58 713483 83 35157 680061 4.92 715218 84 30693 670471 4.38 701164 85 29767 658203 4.33 687970 86 33026 652916 4.81 685942 87 27789 645808 4.13 673597 88 28258 640930 4.22 669188 89 32548 633297 4.89 665845 90 27641 629536 4.21 657177 91 28619 621702 4.40 650321 92 31118 617772 4.80 648890 93 27449 610775 4.30 638224 94 26995 603319 4.28 630314 95 30972 595701 4.94 626673 96 25856 584143 4.24 609999 97 25396 567267 4.29 592663 98 28176 528341 5.06 556517 99 15376 370613 3.98 385989 100 17502 330682 5.03 348184 101 26647 530457 4.78 557104 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 101566 126039 44.62 227605 2 88770 112171 44.18 200941 3 93761 122303 43.40 216064 4 86561 138739 38.42 225300 5 37785 180526 17.31 218311 6 23152 98585 19.02 121737 7 20044 104867 16.05 124911 8 21251 99069 17.66 120320 9 18539 84630 17.97 103169 10 20481 94475 17.82 114956 11 21672 92076 19.05 113748 12 20866 88727 19.04 109593 13 21471 86127 19.95 107598 14 22356 89002 20.08 111358 15 21754 79700 21.44 101454 16 20480 78159 20.76 98639 17 25200 84012 23.07 109212 18 23533 79670 22.80 103203 19 22972 78923 22.54 101895 20 21135 76940 21.55 98075 21 21906 74099 22.82 96005 22 22220 77898 22.19 100118 23 20395 73866 21.64 94261 24 19669 71487 21.58 91156 25 21720 73335 22.85 95055 26 20065 70802 22.08 90867 27 21641 71384 23.26 93025 28 19697 67462 22.60 87159 29 20492 70401 22.55 90893 30 19668 65445 23.11 85113 31 18867 68359 21.63 87226 32 18579 64290 22.42 82869 33 20777 64662 24.32 85439 34 20002 66543 23.11 86545 35 23785 71107 25.07 94892 36 20081 63125 24.13 83206 37 20471 65869 23.71 86340 38 18657 62966 22.86 81623 39 18989 61211 23.68 80200 40 20466 62065 24.80 82531 41 18208 60073 23.26 78281 42 18350 62007 22.84 80357 43 18228 60232 23.23 78460 44 16913 58328 22.48 75241 45 20340 62233 24.63 82573 46 16191 54940 22.76 71131 47 16928 56594 23.02 73522 48 17117 55640 23.53 72757 49 16258 57770 21.96 74028 50 15660 52463 22.99 68123 51 15367 50735 23.25 66102 52 15559 52407 22.89 67966 53 15831 50649 23.81 66480 54 15359 51247 23.06 66606 55 15421 48522 24.12 63943 56 14327 47823 23.05 62150 57 14496 48205 23.12 62701 58 14091 48033 22.68 62124 59 13406 44429 23.18 57835 60 13904 44741 23.71 58645 61 12696 44085 22.36 56781 62 12554 41835 23.08 54389 63 13307 40961 24.52 54268 64 12641 41901 23.18 54542 65 12435 39419 23.98 51854 66 13241 41130 24.35 54371 67 12239 41734 22.68 53973 68 13228 42319 23.81 55547 69 11819 40513 22.58 52332 70 11571 39076 22.85 50647 71 11981 36363 24.78 48344 72 11194 35242 24.11 46436 73 11192 36588 23.42 47780 74 10456 35889 22.56 46345 75 10640 36132 22.75 46772 76 10653 34274 23.71 44927 77 10359 35159 22.76 45518 78 10495 34510 23.32 45005 79 9857 32681 23.17 42538 80 9754 32569 23.05 42323 81 9805 32974 22.92 42779 82 9835 32580 23.19 42415 83 10091 31132 24.48 41223 84 10523 33747 23.77 44270 85 9358 31494 22.91 40852 86 9305 31128 23.01 40433 87 9323 30547 23.38 39870 88 9327 30070 23.67 39397 89 9725 30869 23.96 40594 90 9457 30543 23.64 40000 91 8848 29190 23.26 38038 92 8579 28763 22.97 37342 93 8858 28810 23.52 37668 94 8948 28777 23.72 37725 95 8655 27887 23.69 36542 96 8237 27810 22.85 36047 97 9320 29642 23.92 38962 98 8206 26319 23.77 34525 99 7233 0 100.00 7233 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 33375 154971 17.72 188346 2 34704 161955 17.65 196659 3 31730 164026 16.21 195756 4 34420 173804 16.53 208224 5 4799 318218 1.49 323017 6 3406 387864 0.87 391270 7 2237 218391 1.01 220628 8 2350 236892 0.98 239242 9 2124 194409 1.08 196533 10 2209 186377 1.17 188586 11 3130 248144 1.25 251274 12 2330 197145 1.17 199475 13 2284 195429 1.16 197713 14 2333 190243 1.21 192576 15 2255 185082 1.20 187337 16 2102 171985 1.21 174087 17 2356 183757 1.27 186113 18 2890 161934 1.75 164824 19 2273 162253 1.38 164526 20 2377 161447 1.45 163824 21 2949 151326 1.91 154275 22 2466 168546 1.44 171012 23 2256 164784 1.35 167040 24 1977 147803 1.32 149780 25 2063 151107 1.35 153170 26 2351 159553 1.45 161904 27 2120 147520 1.42 149640 28 2067 141753 1.44 143820 29 2217 153496 1.42 155713 30 2207 143455 1.52 145662 31 2125 138374 1.51 140499 32 1962 142055 1.36 144017 33 2395 162841 1.45 165236 34 2090 137677 1.50 139767 35 2241 142158 1.55 144399 36 2098 139168 1.49 141266 37 2069 129747 1.57 131816 38 2339 139441 1.65 141780 39 2244 130779 1.69 133023 40 2187 124915 1.72 127102 41 2295 122263 1.84 124558 42 2198 115025 1.88 117223 43 2374 119683 1.94 122057 44 2092 119239 1.72 121331 45 1985 108999 1.79 110984 46 1962 108853 1.77 110815 47 2255 112158 1.97 114413 48 2117 106897 1.94 109014 49 2212 111959 1.94 114171 50 2259 107834 2.05 110093 51 2017 100639 1.96 102656 52 2076 98097 2.07 100173 53 2382 108929 2.14 111311 54 1946 98658 1.93 100604 55 1945 100144 1.91 102089 56 1917 97898 1.92 99815 57 2299 93558 2.40 95857 58 1871 95017 1.93 96888 59 1601 94397 1.67 95998 60 1512 88911 1.67 90423 61 1288 89428 1.42 90716 62 1298 93316 1.37 94614 63 1218 93384 1.29 94602 64 1079 82935 1.28 84014 65 1202 89176 1.33 90378 66 1084 80678 1.33 81762 67 1197 88029 1.34 89226 68 1111 86072 1.27 87183 69 1047 82521 1.25 83568 70 1131 83069 1.34 84200 71 1043 85495 1.21 86538 72 1022 77250 1.31 78272 73 970 76888 1.25 77858 74 954 80149 1.18 81103 75 980 75224 1.29 76204 76 841 74003 1.12 74844 77 1008 78645 1.27 79653 78 1003 74954 1.32 75957 79 991 73512 1.33 74503 80 890 71046 1.24 71936 81 985 69017 1.41 70002 82 932 68090 1.35 69022 83 899 69509 1.28 70408 84 916 65518 1.38 66434 85 867 73708 1.16 74575 86 904 67319 1.33 68223 87 946 66676 1.40 67622 88 866 62946 1.36 63812 89 1007 67907 1.46 68914 90 913 65976 1.36 66889 91 953 67349 1.40 68302 92 890 64518 1.36 65408 93 838 61696 1.34 62534 94 851 60332 1.39 61183 95 896 61888 1.43 62784 96 933 58201 1.58 59134 97 886 58407 1.49 59293 98 716 57293 1.23 58009 99 652 0 100.00 652 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 64160 214116 23.06 278276 2 56873 177353 24.28 234226 3 58874 177644 24.89 236518 4 61322 170666 26.43 231988 5 24301 339153 6.69 363454 6 22761 469450 4.62 492211 7 23523 627334 3.61 650857 8 21892 622311 3.40 644203 9 24535 581457 4.05 605992 10 23841 596630 3.84 620471 11 23106 586143 3.79 609249 12 20826 546361 3.67 567187 13 21402 565175 3.65 586577 14 21901 567058 3.72 588959 15 21102 580863 3.51 601965 16 19528 554269 3.40 573797 17 20833 556792 3.61 577625 18 19746 555071 3.44 574817 19 18671 516980 3.49 535651 20 21457 544150 3.79 565607 21 19689 507692 3.73 527381 22 21163 492720 4.12 513883 23 20509 483799 4.07 504308 24 18394 463025 3.82 481419 25 20364 461379 4.23 481743 26 19455 457579 4.08 477034 27 19454 483597 3.87 503051 28 19179 465706 3.96 484885 29 18877 461752 3.93 480629 30 19786 443321 4.27 463107 31 19081 429939 4.25 449020 32 18284 416778 4.20 435062 33 19057 409352 4.45 428409 34 18586 409307 4.34 427893 35 19192 420731 4.36 439923 36 17190 418454 3.95 435644 37 17508 409307 4.10 426815 38 18376 423884 4.16 442260 39 18096 393801 4.39 411897 40 17458 408551 4.10 426009 41 18142 387306 4.47 405448 42 17548 391050 4.29 408598 43 17880 370184 4.61 388064 44 16498 369027 4.28 385525 45 16831 367009 4.38 383840 46 16165 367653 4.21 383818 47 15573 361327 4.13 376900 48 15777 350473 4.31 366250 49 15287 352348 4.16 367635 50 15286 347348 4.22 362634 51 15299 336880 4.34 352179 52 14414 318712 4.33 333126 53 14067 320701 4.20 334768 54 13370 311365 4.12 324735 55 13342 319358 4.01 332700 56 13286 310497 4.10 323783 57 12897 314335 3.94 327232 58 12255 305878 3.85 318133 59 12435 294553 4.05 306988 60 11708 299633 3.76 311341 61 12212 285812 4.10 298024 62 11673 283059 3.96 294732 63 11045 284225 3.74 295270 64 11736 275866 4.08 287602 65 10923 277852 3.78 288775 66 10644 269778 3.80 280422 67 10512 268808 3.76 279320 68 10464 278768 3.62 289232 69 10695 269824 3.81 280519 70 10565 263287 3.86 273852 71 10192 256837 3.82 267029 72 10344 254908 3.90 265252 73 10332 251327 3.95 261659 74 9909 251090 3.80 260999 75 9715 250143 3.74 259858 76 9395 240302 3.76 249697 77 10162 240417 4.06 250579 78 9741 241161 3.88 250902 79 9498 244952 3.73 254450 80 9679 236889 3.93 246568 81 9555 237428 3.87 246983 82 9539 232679 3.94 242218 83 8955 232323 3.71 241278 84 9231 231126 3.84 240357 85 8807 225061 3.77 233868 86 8628 224673 3.70 233301 87 8474 221019 3.69 229493 88 8518 215483 3.80 224001 89 8444 214567 3.79 223011 90 8173 214872 3.66 223045 91 8123 212118 3.69 220241 92 7860 209920 3.61 217780 93 7776 205999 3.64 213775 94 7389 202893 3.51 210282 95 7608 199349 3.68 206957 96 7339 197671 3.58 205010 97 6993 197669 3.42 204662 98 6483 187784 3.34 194267 99 4494 0 100.00 4494