Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-169_S12_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-169_S12_L002_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 21392200
Paired-end alignments with a unique best hit 11690174
Pairs without alignments under any condition 5987742
Pairs that did not map uniquely 3714284
Genomic sequence context not extractable (edges of chromosomes) 49881

Cytosine Methylation

Total C's analysed 359064078
Methylated C's in CpG context 11454649
Methylated C's in CHG context 1941596
Methylated C's in CHH context 9257642
Methylated C's in Unknown context 304018
Unmethylated C's in CpG context 42793947
Unmethylated C's in CHG context 78204596
Unmethylated C's in CHH context 215411648
Unmethylated C's in Unknown context 1857630
Percentage methylation (CpG context) 21.1%
Percentage methylation (CHG context) 2.4%
Percentage methylation (CHH context) 4.1%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 5774071 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 5866222 original bottom strand